Experiment set10IT076 for Escherichia coli BW25113
LB Anaerobic with Phenazine ethosulfate 0.000125 mM
Group: stressMedia: LB + Phenazine ethosulfate (0.125 mM)
Culturing: Keio_ML9a, 96 deep-well microplate; Multitron, Anaerobic, at 37 (C), shaken=0 rpm
By: Hans_Hualan on 7/20/2015
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Specific Phenotypes
For 15 genes in this experiment
For stress Phenazine ethosulfate in Escherichia coli BW25113
For stress Phenazine ethosulfate across organisms
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Selenoamino acid metabolism
- Glycine, serine and threonine metabolism
- Glyoxylate and dicarboxylate metabolism
- Methane metabolism
- Aminoacyl-tRNA biosynthesis
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| formate oxidation to CO2 | 1 | 1 | 1 |
| L-selenocysteine biosynthesis I (bacteria) | 3 | 3 | 2 |
| formate to dimethyl sulfoxide electron transfer | 2 | 2 | 1 |
| L-threonine degradation II | 2 | 2 | 1 |
| nitrate reduction III (dissimilatory) | 2 | 2 | 1 |
| formate to trimethylamine N-oxide electron transfer | 2 | 2 | 1 |
| formate to nitrite electron transfer | 3 | 2 | 1 |
| L-selenocysteine biosynthesis II (archaea and eukaryotes) | 4 | 2 | 1 |
| oxalate degradation VI | 4 | 2 | 1 |
| oxalate degradation III | 5 | 2 | 1 |
| superpathway of C1 compounds oxidation to CO2 | 12 | 4 | 1 |
| purine nucleobases degradation I (anaerobic) | 15 | 6 | 1 |
| superpathway of L-threonine metabolism | 18 | 16 | 1 |
| purine nucleobases degradation II (anaerobic) | 24 | 17 | 1 |