| | gene | name | fitness | t score | description | |
|---|
| b0929 | ompF | +3.0 | 17.0 | outer membrane porin 1a (Ia;b;F) (NCBI) | compare |
| b3405 | ompR | +2.1 | 10.9 | osmolarity response regulator (NCBI) | compare |
| b3860 | dsbA | +1.9 | 14.0 | periplasmic protein disulfide isomerase I (NCBI) | compare |
| b1185 | dsbB | +1.8 | 4.8 | reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella. (VIMSS) | compare |
| b0178 | hlpA | +1.7 | 7.5 | periplasmic chaperone (NCBI) | compare |
| b1613 | manA | +1.5 | 2.8 | mannose-6-phosphate isomerase (VIMSS) | compare |
| b2572 | rseA | +1.5 | 5.1 | anti-sigma factor (NCBI) | compare |
| b2617 | smpA | +1.4 | 5.2 | small membrane protein A (VIMSS) | compare |
| b2512 | yfgL | +1.3 | 7.5 | protein assembly complex, lipoprotein component (NCBI) | compare |
| b4693 | aaaE | +1.3 | 6.8 | no description | compare |
| b1148 | ymfM | +1.3 | 4.8 | e14 prophage; predicted protein (NCBI) | compare |
| b3181 | greA | +1.3 | 6.3 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b1231 | tyrT | +1.3 | 1.7 | tRNA-Tyr (NCBI) | compare |
| b0464 | acrR | +1.3 | 9.0 | DNA-binding transcriptional repressor (NCBI) | compare |
| b4699 | fnrS | +1.2 | 1.6 | FNR-activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq-dependent; mediates negative FNR regulation (RefSeq) | compare |
| b1152 | ymfP | +1.2 | 5.5 | orf, hypothetical protein (VIMSS) | compare |
| b4066 | yjcF | +1.2 | 1.0 | hypothetical protein (NCBI) | compare |
| b1524 | yneH | +1.1 | 1.4 | predicted glutaminase (NCBI) | compare |
| b1349 | recT | +1.0 | 6.2 | Rac prophage; recombination and repair protein (NCBI) | compare |
| b1684 | sufA | +1.0 | 3.1 | iron-sulfur cluster assembly scaffold protein (NCBI) | compare |
| b3791 | rffA | +1.0 | 6.3 | TDP-4-oxo-6-deoxy-D-glucose transaminase (NCBI) | compare |
| b1157 | stfE | +1.0 | 4.1 | no description | compare |
| b2259 | pmrD | +1.0 | 1.3 | polymyxin resistance protein B (VIMSS) | compare |
| b1217 | chaB | +1.0 | 1.4 | cation transport regulator (NCBI) | compare |
| b1920 | fliY | +1.0 | 1.9 | cystine transporter subunit (NCBI) | compare |
| b1048 | mdoG | +1.0 | 5.1 | glucan biosynthesis protein, periplasmic (NCBI) | compare |
| b4692 | oweE | +1.0 | 3.4 | no description | compare |
| b2571 | rseB | +0.9 | 5.8 | periplasmic negative regulator of sigmaE (NCBI) | compare |
| b0418 | pgpA | +0.9 | 4.1 | phosphatidylglycerophosphatase A (NCBI) | compare |
| b2061 | wzb | +0.9 | 2.3 | protein-tyrosine phosphatase (NCBI) | compare |
| b1187 | fadR | +0.9 | 2.4 | fatty acid metabolism regulator (NCBI) | compare |
| b1104 | ycfL | +0.9 | 1.7 | hypothetical protein (NCBI) | compare |
| b3706 | trmE | +0.9 | 3.4 | tRNA modification GTPase (NCBI) | compare |
| b1821 | b1821 | +0.8 | 2.4 | orf, hypothetical protein (VIMSS) | compare |
| b1850 | eda | +0.8 | 2.5 | keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase (NCBI) | compare |
| b3026 | qseC | +0.8 | 2.7 | sensory histidine kinase in two-component regulatory system with QseB (NCBI) | compare |
| b1154 | ycfK | +0.8 | 5.0 | e14 prophage; predicted protein (NCBI) | compare |
| b0946 | ycbW | +0.8 | 3.2 | orf, hypothetical protein (VIMSS) | compare |
| b1446 | ydcY | +0.8 | 1.7 | hypothetical protein (NCBI) | compare |
| b1855 | lpxM | +0.8 | 3.8 | lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase (NCBI) | compare |
| b1563 | relE | +0.8 | 1.7 | Qin prophage; toxin of the RelE-RelB toxin-antitoxin system (NCBI) | compare |
| b4503 | yafF | +0.8 | 0.8 | no description | compare |
| b0806 | ybiM | +0.8 | 2.6 | orf, hypothetical protein (VIMSS) | compare |
| b4533 | ynfO | +0.8 | 1.8 | Qin prophage; predicted protein (NCBI) | compare |
| b1627 | rsxA | +0.8 | 2.4 | Na(+)-translocating NADH-quinone reductase subunit E (NCBI) | compare |
| b2518 | ndk | +0.8 | 2.0 | nucleoside diphosphate kinase (NCBI) | compare |
| b3162 | deaD | +0.8 | 3.3 | inducible ATP-independent RNA helicase (VIMSS) | compare |
| b1926 | fliT | +0.8 | 3.1 | predicted chaperone (NCBI) | compare |
| b1949 | fliQ | +0.8 | 2.1 | flagellar biosynthesis protein Q (NCBI) | compare |
| b2501 | ppk | +0.8 | 5.3 | polyphosphate kinase (NCBI) | compare |
| b1049 | mdoH | +0.7 | 5.2 | glucosyltransferase MdoH (NCBI) | compare |
| b0219 | yafV | +0.7 | 2.1 | predicted C-N hydrolase family amidase, NAD(P)-binding (NCBI) | compare |
| b1155 | ymfS | +0.7 | 2.5 | e14 prophage; predicted protein (NCBI) | compare |
| b4508 | peaD | +0.7 | 2.1 | putative sensory transduction regulator (VIMSS) | compare |
| b0580 | ybdJ | +0.7 | 2.0 | predicted inner membrane protein (NCBI) | compare |
| b0059 | hepA | +0.7 | 6.0 | ATP-dependent helicase HepA (NCBI) | compare |
| b2564 | pdxJ | +0.7 | 2.6 | pyridoxal phosphate biosynthetic protein (NCBI) | compare |
| b1582 | ynfA | +0.7 | 1.3 | hypothetical protein (NCBI) | compare |
| b2104 | thiM | +0.7 | 2.2 | hydroxyethylthiazole kinase (NCBI) | compare |
| b1151 | ymfO | +0.7 | 1.2 | e14 prophage; conserved protein (RefSeq) | compare |
| b1632 | rsxE | +0.7 | 3.6 | NADH-ubiquinone oxidoreductase (NCBI) | compare |
| b0200 | gmhB | +0.7 | 0.9 | hypothetical protein (NCBI) | compare |
| b4481 | rffT | +0.7 | 3.3 | 4-alpha-L-fucosyltransferase (NCBI) | compare |
| b1144 | ymfJ | +0.7 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b3205 | yhbJ | +0.7 | 2.6 | hypothetical protein (NCBI) | compare |
| b0247 | ykfG | +0.7 | 1.1 | CP4-6 prophage; predicted DNA repair protein (NCBI) | compare |
| b2193 | narP | +0.6 | 2.9 | DNA-binding response regulator in two-component regulatory system with NarQ or NarX (NCBI) | compare |
| b1143 | ymfI | +0.6 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b3183 | obgE | +0.6 | 0.7 | GTPase involved in cell partioning and DNA repair (NCBI) | compare |
| b3790 | rffC | +0.6 | 3.1 | TDP-fucosamine acetyltransferase (RefSeq) | compare |
| b2708 | gutQ | +0.6 | 3.3 | orf, hypothetical protein (VIMSS) | compare |
| b2749 | ygbE | +0.6 | 3.2 | conserved inner membrane protein (NCBI) | compare |
| b1158 | pin | +0.6 | 2.7 | e14 prophage; site-specific DNA recombinase (NCBI) | compare |
| b3052 | rfaE | +0.6 | 2.6 | fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (NCBI) | compare |
| b1610 | tus | +0.6 | 3.1 | DNA replication terminus site-binding protein (NCBI) | compare |
| b1147 | ymfL | +0.6 | 1.7 | e14 prophage; predicted DNA-binding transcriptional regulator (RefSeq) | compare |
| b2940 | yqgC | +0.6 | 2.8 | hypothetical protein (NCBI) | compare |
| b1865 | nudB | +0.6 | 0.9 | dATP pyrophosphohydrolase (NCBI) | compare |
| b4241 | treR | +0.6 | 4.6 | trehalose repressor (NCBI) | compare |
| b1429 | tehA | +0.6 | 0.8 | potassium-tellurite ethidium and proflavin transporter (NCBI) | compare |
| b1161 | ycgX | +0.6 | 0.7 | hypothetical protein (NCBI) | compare |
| b0920 | ycbC | +0.6 | 2.3 | conserved inner membrane protein (NCBI) | compare |
| b4171 | miaA | +0.6 | 1.9 | tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI) | compare |
| b2236 | yfaE | +0.6 | 1.2 | predicted 2Fe-2S cluster-containing protein (NCBI) | compare |
| b2947 | gshB | +0.6 | 2.2 | glutathione synthetase (NCBI) | compare |
| b1312 | ycjP | +0.6 | 3.1 | predicted sugar transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b2058 | wcaB | +0.6 | 0.7 | predicted acyl transferase (NCBI) | compare |
| b1263 | trpD | +0.6 | 1.6 | bifunctional indole-3-glycerol-phosphate synthase/anthranilate phosphoribosyltransferase (NCBI) | compare |
| b2620 | smpB | +0.6 | 0.8 | SsrA-binding protein (NCBI) | compare |
| b1350 | recE | +0.6 | 3.5 | Rac prophage; exonuclease VIII, 5' -> 3' specific dsDNA exonuclease (NCBI) | compare |
| b3404 | envZ | +0.6 | 2.9 | osmolarity sensor protein (NCBI) | compare |
| b3673 | emrD | +0.6 | 4.4 | 2-module integral membrane pump; multidrug resistance (VIMSS) | compare |
| b3751 | rbsB | +0.6 | 3.5 | D-ribose transporter subunit (NCBI) | compare |
| b1138 | ymfE | +0.6 | 1.1 | e14 prophage; predicted inner membrane protein (NCBI) | compare |
| b1853 | yebK | +0.6 | 1.4 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2051 | wcaH | +0.6 | 1.4 | GDP-mannose mannosyl hydrolase (VIMSS) | compare |
| b2953 | yggU | +0.6 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b3728 | pstS | +0.6 | 1.6 | phosphate transporter subunit (NCBI) | compare |
| b2768 | ygcP | +0.5 | 1.3 | predicted anti-terminator regulatory protein (NCBI) | compare |
| b1846 | yebE | +0.5 | 2.2 | hypothetical protein (NCBI) | compare |
| b1584 | speG | +0.5 | 3.2 | spermidine N1-acetyltransferase (NCBI) | compare |
| b3630 | rfaP | +0.5 | 3.9 | kinase that phosphorylates core heptose of lipopolysaccharide (NCBI) | compare |
| b1728 | ydjM | +0.5 | 1.7 | predicted inner membrane protein regulated by LexA (RefSeq) | compare |
| b3009 | yghB | +0.5 | 2.9 | conserved inner membrane protein (NCBI) | compare |
| b4408 | csrB | +0.5 | 2.0 | CsrA-binding sRNA, antagonizing CsrA regulation (NCBI) | compare |
| b0677 | nagA | +0.5 | 2.7 | N-acetylglucosamine-6-phosphate deacetylase (NCBI) | compare |
| b0191 | yaeJ | +0.5 | 2.1 | hypothetical protein (NCBI) | compare |
| b4416 | rybA | +0.5 | 0.9 | unknown RNA (NCBI) | compare |
| b3071 | yqjI | +0.5 | 2.0 | predicted transcriptional regulator (NCBI) | compare |
| b1604 | ydgH | +0.5 | 2.3 | hypothetical protein (NCBI) | compare |
| b1699 | ydiS | +0.5 | 2.1 | predicted oxidoreductase with FAD/NAD(P)-binding domain (NCBI) | compare |
| b1423 | ydcJ | +0.5 | 1.4 | hypothetical protein (NCBI) | compare |
| b1782 | mipA | +0.5 | 2.3 | scaffolding protein for murein synthesizing machinery (NCBI) | compare |
| b1095 | fabF | +0.5 | 2.9 | 3-oxoacyl-(acyl carrier protein) synthase (NCBI) | compare |
| b2261 | menC | +0.5 | 2.9 | O-succinylbenzoate synthase (NCBI) | compare |
| b1557 | cspB | +0.5 | 1.1 | Qin prophage; cold shock protein (NCBI) | compare |
| b3119 | tdcR | +0.5 | 0.9 | threonine dehydratase operon activator protein (VIMSS) | compare |
| b4484 | cpxP | +0.5 | 2.8 | periplasmic protein combats stress (NCBI) | compare |
| b0447 | ybaO | +0.5 | 2.2 | putative LRP-like transcriptional regulator (VIMSS) | compare |
| b0797 | rhlE | +0.5 | 2.8 | RNA helicase (NCBI) | compare |
| b4373 | rimI | +0.5 | 1.7 | ribosomal-protein-alanine N-acetyltransferase (NCBI) | compare |
| b1438 | ydcQ | +0.5 | 1.9 | predicted DNA-binding transcriptional regulator (RefSeq) | compare |
| b4609 | ryfD | +0.5 | 1.7 | Novel sRNA, function unknown (RefSeq) | compare |
| b1139 | lit | +0.5 | 2.1 | e14 prophage; cell death peptidase, inhibitor of T4 late gene expression (NCBI) | compare |
| b1583 | ynfB | +0.5 | 1.2 | hypothetical protein (NCBI) | compare |
| b3631 | rfaG | +0.5 | 4.1 | glucosyltransferase I (NCBI) | compare |
| b2047 | wcaJ | +0.5 | 2.1 | predicted UDP-glucose lipid carrier transferase (NCBI) | compare |
| b1399 | paaX | +0.5 | 2.1 | DNA-binding transcriptional repressor of phenylacetic acid degradation, aryl-CoA responsive (NCBI) | compare |
| b2915 | yqfE | +0.5 | 1.4 | hypothetical protein (RefSeq) | compare |
| b1281 | pyrF | +0.5 | 1.8 | orotidine 5'-phosphate decarboxylase (NCBI) | compare |
| b0579 | ybdF | +0.5 | 1.8 | hypothetical protein (NCBI) | compare |
| b0125 | hpt | +0.5 | 2.4 | hypoxanthine phosphoribosyltransferase (VIMSS) | compare |
| b2082 | ogrK | +0.5 | 1.9 | DNA-binding transcriptional regulator prophage P2 remnant (NCBI) | compare |
| b2570 | rseC | +0.5 | 2.0 | RseC protein involved in reduction of the SoxR iron-sulfur cluster (NCBI) | compare |
| b1332 | ynaJ | +0.5 | 0.4 | predicted inner membrane protein (NCBI) | compare |
| b2939 | yqgB | +0.5 | 0.9 | predicted protein (RefSeq) | compare |
| b1153 | ymfQ | +0.5 | 1.1 | e14 prophage; conserved protein (NCBI) | compare |
| b0222 | lpcA | +0.5 | 1.3 | phosphoheptose isomerase (NCBI) | compare |
| b4402 | yjjY | +0.5 | 0.2 | hypothetical protein (NCBI) | compare |
| b2195 | ccmG | +0.5 | 1.4 | periplasmic thioredoxin of cytochrome c-type biogenesis (NCBI) | compare |
| b4552 | yrhC | +0.5 | 0.5 | no description | compare |
| b4529 | ydbJ | +0.5 | 0.6 | hypothetical protein (NCBI) | compare |
| b1384 | feaR | +0.5 | 2.8 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b0937 | ssuE | +0.5 | 1.2 | NAD(P)H-dependent FMN reductase (NCBI) | compare |
| b1811 | yoaH | +0.5 | 1.2 | hypothetical protein (NCBI) | compare |
| b2223 | atoE | +0.5 | 2.0 | short chain fatty acid transporter (NCBI) | compare |
| b3632 | rfaQ | +0.5 | 4.1 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b2661 | gabD | +0.5 | 2.7 | succinate-semialdehyde dehydrogenase I, NADP-dependent (NCBI) | compare |
| b0889 | lrp | +0.5 | 1.2 | DNA-binding transcriptional dual regulator, leucine-binding (NCBI) | compare |
| b1915 | yecF | +0.5 | 2.4 | hypothetical protein (NCBI) | compare |
| b4011 | yjaA | +0.4 | 1.6 | hypothetical protein (NCBI) | compare |
| b1034 | ycdX | +0.4 | 1.9 | hypothetical protein (NCBI) | compare |
| b0405 | queA | +0.4 | 2.0 | S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI) | compare |
| b0250 | ykfB | +0.4 | 1.6 | CP4-6 prophage; predicted protein (NCBI) | compare |
| b2343 | b2343 | +0.4 | 0.9 | orf, hypothetical protein (VIMSS) | compare |
| b1642 | slyA | +0.4 | 1.1 | transcriptional regulator for cryptic hemolysin (VIMSS) | compare |
| b1516 | lsrB | +0.4 | 1.9 | AI2 transporter (NCBI) | compare |
| b1792 | yeaO | +0.4 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b0108 | ppdD | +0.4 | 1.8 | predicted major pilin subunit (NCBI) | compare |
| b4702 | mgtL | +0.4 | 0.8 | regulatory leader peptide for mgtA (NCBI) | compare |
| b0641 | rlpB | +0.4 | 1.2 | minor lipoprotein (NCBI) | compare |
| b1822 | rrmA | +0.4 | 1.6 | 23S rRNA m1G745 methyltransferase (NCBI) | compare |
| b0965 | b0965 | +0.4 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b1090 | plsX | +0.4 | 1.8 | glycerolphosphate auxotrophy in plsB background (VIMSS) | compare |
| b2535 | csiE | +0.4 | 3.1 | orf, hypothetical protein (VIMSS) | compare |
| b1780 | yeaD | +0.4 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b3741 | gidA | +0.4 | 1.6 | glucose-inhibited division protein A (NCBI) | compare |
| b3817 | yigF | +0.4 | 2.3 | conserved inner membrane protein (NCBI) | compare |
| b2155 | cirA | +0.4 | 2.5 | ferric iron-catecholate outer membrane transporter (NCBI) | compare |
| b1842 | holE | +0.4 | 0.8 | DNA polymerase III, theta subunit (NCBI) | compare |
| b1685 | ydiH | +0.4 | 0.8 | predicted protein (RefSeq) | compare |
| b4397 | creA | +0.4 | 1.3 | hypothetical protein (NCBI) | compare |
| b2096 | gatY | +0.4 | 2.0 | tagatose-bisphosphate aldolase 1 (VIMSS) | compare |
| b2969 | yghE | +0.4 | 1.1 | predicted secretion pathway protein, L-type protein (pseudogene) (RefSeq) | compare |
| b1672 | ydhW | +0.4 | 1.8 | hypothetical protein (NCBI) | compare |
| b1379 | hslJ | +0.4 | 1.9 | heat-inducible protein (NCBI) | compare |
| b0238 | gpt | +0.4 | 1.6 | xanthine phosphoribosyltransferase (NCBI) | compare |
| b0928 | aspC | +0.4 | 1.7 | aspartate aminotransferase, PLP-dependent (NCBI) | compare |
| b4012 | yjaB | +0.4 | 1.2 | predicted acetyltransferase (NCBI) | compare |
| b1904 | yecR | +0.4 | 1.0 | hypothetical protein (NCBI) | compare |
| b1134 | ymfB | +0.4 | 1.0 | bifunctional thiamin pyrimidine pyrophosphate hydrolase/ thiamin pyrophosphate hydrolase (NCBI) | compare |
| b2531 | iscR | +0.4 | 0.6 | DNA-binding transcriptional repressor (NCBI) | compare |
| b2911 | ssrS | +0.4 | 0.6 | 6S regulatory RNA (NCBI) | compare |
| b4596 | yciZ | +0.4 | 0.8 | hypothetical protein (RefSeq) | compare |
| b1273 | yciN | +0.4 | 0.9 | hypothetical protein (NCBI) | compare |
| b4041 | plsB | +0.4 | 1.0 | glycerol-3-phosphate acyltransferase (VIMSS) | compare |
| b2340 | sixA | +0.4 | 1.6 | phosphohistidine phosphatase (NCBI) | compare |
| b1528 | ydeA | +0.4 | 2.1 | sugar efflux transporter (NCBI) | compare |
| b1630 | rsxD | +0.4 | 1.9 | electron transport complex protein RnfD (NCBI) | compare |
| b0556 | rzpD | +0.4 | 1.2 | DLP12 prophage; predicted murein endopeptidase (NCBI) | compare |
| b0097 | yacA | +0.4 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b2701 | mltB | +0.4 | 2.0 | membrane-bound lytic murein transglycosylase B (NCBI) | compare |
| b3146 | yraL | +0.4 | 2.0 | predicted methyltransferase (NCBI) | compare |
| b0970 | yccA | +0.4 | 1.4 | inner membrane protein (NCBI) | compare |
| b0570 | cusS | +0.4 | 2.4 | sensory histidine kinase in two-component regulatory system with CusR, senses copper ions (NCBI) | compare |
| b1569 | dicC | +0.4 | 1.5 | Qin prophage; DNA-binding transcriptional regulator for DicB (NCBI) | compare |
| b4450 | arcZ | +0.4 | 1.4 | sRNA antisense regulator of tpx and sdaA, Hfq-dependent (RefSeq) | compare |
| b4017 | arpA | +0.4 | 1.1 | regulator of acetyl CoA synthetase (NCBI) | compare |
| b4578 | insP | +0.4 | 1.2 | no description | compare |
| b4532 | yncN | +0.4 | 1.3 | orf, hypothetical protein (VIMSS) | compare |