Experiment set10IT065 for Pseudomonas simiae WCS417

Compare to:

soil sample 8; outgrowth in LB

200 most important genes:

  gene name fitness t score description  
PS417_27865 -6.4 -3.2 LysR family transcriptional regulator compare
PS417_01855 -5.6 -2.4 phosphoribosyl-AMP cyclohydrolase compare
PS417_26985 -5.4 -4.7 phosphoenolpyruvate-protein phosphotransferase compare
PS417_14065 -5.4 -4.4 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_13510 -5.0 -1.3 polyketide cyclase compare
PS417_23545 -4.9 -2.5 gamma-glutamyl kinase compare
PS417_00385 -4.7 -1.3 Fur family transcriptional regulator compare
PS417_21510 -4.6 -2.4 histidine kinase compare
PS417_27800 -4.5 -3.1 exodeoxyribonuclease III compare
PS417_13800 -4.3 -2.9 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_00185 -4.3 -3.7 tryptophan synthase subunit beta compare
PS417_16005 -4.3 -3.4 ATPase compare
PS417_21480 -4.2 -1.9 23S rRNA pseudouridylate synthase compare
PS417_24745 -4.1 -2.2 gamma-glutamyl phosphate reductase compare
PS417_22570 -4.1 -1.1 H-NS histone compare
PS417_26900 -3.9 -2.0 L-cystine transporter tcyP compare
PS417_02280 -3.7 -1.8 GlcNAc-PI de-N-acetylase compare
PS417_08135 -3.7 -6.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_23380 -3.7 -2.3 cytochrome o ubiquinol oxidase subunit III compare
PS417_22450 -3.7 -1.6 ATP-dependent DNA helicase RuvA compare
PS417_02975 -3.6 -4.1 3-dehydroquinate dehydratase compare
PS417_27040 -3.6 -3.0 3-phosphoglycerate dehydrogenase compare
PS417_21630 -3.6 -2.5 magnesium transporter compare
PS417_06375 -3.6 -0.9 deoxycytidine triphosphate deaminase compare
PS417_20855 -3.6 -1.3 hypothetical protein compare
PS417_01575 -3.5 -4.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_01565 -3.5 -4.2 imidazole glycerol phosphate synthase compare
PS417_23810 -3.4 -12.0 acetolactate synthase 3 catalytic subunit compare
PS417_01580 -3.4 -1.2 imidazole glycerol phosphate synthase compare
PS417_26990 -3.4 -1.3 RNA pyrophosphohydrolase compare
PS417_27795 -3.4 -0.9 orotate phosphoribosyltransferase compare
PS417_02510 -3.3 -6.3 ATP phosphoribosyltransferase regulatory subunit compare
PS417_08125 -3.3 -0.9 prephenate dehydratase compare
PS417_26770 -3.3 -2.8 tRNA (guanine-N7)-methyltransferase compare
PS417_04420 -3.2 -7.9 histidinol dehydrogenase compare
PS417_03260 -3.2 -1.1 5S ribosomal RNA compare
PS417_02415 -3.2 -5.0 phosphoserine phosphatase compare
PS417_23770 -3.2 -1.8 exodeoxyribonuclease V subunit alpha compare
PS417_23805 -3.2 -4.5 acetolactate synthase 3 regulatory subunit compare
PS417_12855 -3.2 -4.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_07640 -3.1 -2.6 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_20985 -3.1 -2.8 porin compare
PS417_01605 -3.1 -1.6 phosphoglycerate mutase compare
PS417_24710 -3.0 -5.0 lipoprotein compare
PS417_27245 -3.0 -3.6 aminotransferase DegT compare
PS417_04415 -3.0 -6.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_27195 -2.9 -1.1 N-acetylglutamate synthase compare
PS417_01710 -2.9 -3.0 histidine utilization repressor compare
PS417_19350 -2.9 -2.7 GTP cyclohydrolase compare
PS417_05365 -2.9 -1.8 FAD-binding protein compare
PS417_22565 -2.8 -0.7 formyltetrahydrofolate deformylase compare
PS417_27085 -2.8 -2.6 AraC family transcriptional regulator compare
PS417_09210 -2.8 -1.7 TetR family transcriptional regulator compare
PS417_22445 -2.8 -2.7 ATP-dependent DNA helicase RuvB compare
PS417_04875 -2.7 -1.4 molybdenum cofactor biosynthesis protein MoaE compare
PS417_23800 -2.7 -7.3 ketol-acid reductoisomerase compare
PS417_04365 -2.7 -1.0 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_22690 -2.7 -4.5 phosphogluconate dehydratase compare
PS417_26605 -2.7 -1.0 malonate decarboxylase subunit beta compare
PS417_18595 -2.7 -2.9 3-isopropylmalate dehydratase compare
PS417_03310 -2.7 -6.8 carbonate dehydratase compare
PS417_23375 -2.6 -1.2 cytochrome C oxidase compare
PS417_01095 -2.6 -1.6 amino acid ABC transporter ATP-binding protein compare
PS417_24370 -2.6 -1.0 (2Fe-2S)-binding protein compare
PS417_23390 -2.6 -7.1 ubiquinol oxidase subunit II compare
PS417_17565 -2.5 -2.7 branched-chain amino acid aminotransferase compare
PS417_23360 -2.5 -0.9 hypothetical protein compare
PS417_24155 -2.5 -1.7 ATP-binding protein compare
PS417_22780 -2.5 -1.9 XRE family transcriptional regulator compare
PS417_26730 -2.5 -0.9 pyrroline-5-carboxylate reductase compare
PS417_03560 -2.5 -1.9 GTP-binding protein compare
PS417_23915 -2.5 -3.0 pantoate--beta-alanine ligase compare
PS417_23910 -2.5 -4.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_14920 -2.4 -3.6 CoA-transferase compare
PS417_23580 -2.4 -1.3 peptidylprolyl isomerase compare
PS417_18585 -2.4 -3.3 3-isopropylmalate dehydrogenase compare
PS417_04270 -2.4 -6.0 ribonuclease G compare
PS417_03455 -2.4 -1.5 type III secretion protein compare
PS417_24705 -2.4 -2.9 D-alanyl-D-alanine carboxypeptidase compare
PS417_19065 -2.3 -1.1 monooxygenase compare
PS417_24835 -2.3 -3.3 hypothetical protein compare
PS417_23250 -2.3 -5.0 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_03935 -2.3 -3.0 N-acetyl-anhydromuranmyl-L-alanine amidase compare
PS417_08730 -2.3 -1.9 cytochrome C compare
PS417_04340 -2.3 -4.4 ribosome hibernation promoting factor HPF compare
PS417_26890 -2.3 -5.7 dihydroxy-acid dehydratase compare
PS417_01920 -2.3 -1.4 ATP-dependent protease subunit HslV compare
PS417_01145 -2.3 -0.8 taurine transporter ATP-binding subunit compare
PS417_26740 -2.2 -6.4 homoserine acetyltransferase compare
PS417_18390 -2.2 -3.6 LacI family transcriptional regulator compare
PS417_16500 -2.2 -5.5 arginyl-tRNA-protein transferase compare
PS417_23385 -2.1 -5.2 cytochrome o ubiquinol oxidase subunit I compare
PS417_23995 -2.1 -0.8 preprotein translocase subunit SecG compare
PS417_18600 -2.1 -1.9 isopropylmalate isomerase compare
PS417_22520 -2.1 -1.7 histidine kinase compare
PS417_00180 -2.1 -1.9 tryptophan synthase subunit alpha compare
PS417_23490 -2.0 -1.3 dihydrofolate reductase compare
PS417_08685 -2.0 -1.7 flagellar hook-length control protein FliK compare
PS417_23025 -2.0 -5.3 murein transglycosylase compare
PS417_15085 -2.0 -3.3 ATPase AAA compare
PS417_07620 -2.0 -2.0 beta-hexosaminidase compare
PS417_21210 -2.0 -1.8 amidotransferase compare
PS417_16510 -2.0 -2.8 Clp protease ClpX compare
PS417_18560 -2.0 -6.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_10985 -2.0 -1.0 NADH:flavin oxidoreductase compare
PS417_18570 -2.0 -3.0 peptidoglycan-binding protein compare
PS417_04390 -2.0 -3.3 toluene tolerance protein compare
PS417_18070 -1.9 -0.9 general secretion pathway protein GspH compare
PS417_19425 -1.9 -0.9 allantoicase compare
PS417_17160 -1.9 -2.5 1-aminocyclopropane-1-carboxylate deaminase compare
PS417_15095 -1.9 -2.1 hypothetical protein compare
PS417_04595 -1.9 -2.1 cell division protein MraZ compare
PS417_25725 -1.9 -8.2 anthranilate synthase component I compare
PS417_06680 -1.9 -6.0 nuclease PIN compare
PS417_19835 -1.9 -1.4 flagellar biosynthesis protein FliS compare
PS417_18530 -1.9 -3.3 O-succinylhomoserine sulfhydrylase compare
PS417_26230 -1.9 -2.2 electron transfer flavoprotein subunit alpha compare
PS417_11180 -1.9 -2.4 TetR family transcriptional regulator compare
PS417_25790 -1.8 -2.7 aminoglycoside phosphotransferase compare
PS417_02950 -1.8 -2.5 tRNA-dihydrouridine synthase B compare
PS417_19675 -1.8 -3.5 chemotaxis protein CheY compare
PS417_05100 -1.8 -1.7 RNA polymerase sigma factor compare
PS417_23370 -1.8 -2.7 protoheme IX farnesyltransferase compare
PS417_09915 -1.8 -1.3 hypothetical protein compare
PS417_07710 -1.8 -5.1 membrane protein compare
PS417_22060 -1.8 -1.0 hypothetical protein compare
PS417_15110 -1.8 -4.3 protein BatD compare
PS417_19690 -1.8 -4.5 histidine kinase compare
PS417_27535 -1.8 -4.5 chemotaxis protein CheY compare
PS417_19955 -1.8 -1.6 hypothetical protein compare
PS417_16990 -1.8 -3.1 acyl-CoA dehydrogenase compare
PS417_00160 -1.7 -3.2 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
PS417_03525 -1.7 -1.1 hypothetical protein compare
PS417_27135 -1.7 -0.6 glutamine synthetase compare
PS417_01560 -1.7 -1.0 imidazoleglycerol-phosphate dehydratase compare
PS417_22775 -1.6 -5.2 histidine kinase compare
PS417_21655 -1.6 -0.9 aspartate kinase compare
PS417_07985 -1.6 -1.3 AbrB family transcriptional regulator compare
PS417_13820 -1.6 -5.0 UDP-glucose 6-dehydrogenase compare
PS417_24290 -1.6 -2.3 hypothetical protein compare
PS417_24500 -1.6 -3.0 DEAD/DEAH box helicase compare
PS417_13075 -1.6 -1.4 hypothetical protein compare
PS417_21565 -1.6 -3.0 flagellar basal body rod protein FlgC compare
PS417_27290 -1.6 -1.3 hypothetical protein compare
PS417_17550 -1.6 -2.0 branched-chain alpha-ketoacid dehydrogenase, E1 component beta subunit (EC 1.2.4.4) (from data) compare
PS417_06945 -1.6 -0.9 membrane protein compare
PS417_22375 -1.6 -0.7 cold-shock protein compare
PS417_05815 -1.6 -3.0 recombinase RecA compare
PS417_04385 -1.6 -3.5 organic solvent ABC transporter substrate-binding protein compare
PS417_19765 -1.6 -3.1 flagellar hook-length control protein compare
PS417_13795 -1.6 -3.6 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_26235 -1.6 -3.2 (Fe-S)-binding protein compare
PS417_19850 -1.6 -5.0 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_04375 -1.6 -2.1 ABC transporter ATP-binding protein compare
PS417_11615 -1.6 -1.1 urea ABC transporter ATP-binding protein compare
PS417_12310 -1.5 -5.2 methionine synthase compare
PS417_05595 -1.5 -3.2 ornithine carbamoyltransferase compare
PS417_20635 -1.5 -0.8 ABC transporter ATP-binding protein compare
PS417_02720 -1.5 -0.7 TetR family transcriptional regulator compare
PS417_15560 -1.5 -2.1 hypothetical protein compare
PS417_06245 -1.5 -1.1 zinc metallopeptidase RseP compare
PS417_21430 -1.5 -1.4 3-oxoacyl-ACP synthase compare
PS417_12660 -1.5 -1.4 hypothetical protein compare
PS417_09440 -1.5 -1.7 MerR family transcriptional regulator compare
PS417_15105 -1.5 -4.1 membrane protein compare
PS417_27140 -1.5 -2.2 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) compare
PS417_19650 -1.5 -3.2 chemotaxis protein CheW compare
PS417_13790 -1.5 -4.7 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_25650 -1.5 -2.2 anhydro-N-acetylmuramic acid kinase compare
PS417_12280 -1.5 -1.5 MerR family transcriptional regulator compare
PS417_20025 -1.5 -1.2 alpha-ribazole phosphatase compare
PS417_19840 -1.5 -5.3 flagellar cap protein FliD compare
PS417_13295 -1.5 -4.6 TetR family transcriptional regulator compare
PS417_02555 -1.5 -6.1 exoribonuclease R compare
PS417_26745 -1.5 -2.8 methionine biosynthesis protein MetW compare
PS417_09085 -1.5 -1.2 hypothetical protein compare
PS417_27870 -1.5 -1.6 ATP-dependent DNA helicase RecG compare
PS417_21575 -1.5 -3.5 chemotaxis protein compare
PS417_03165 -1.5 -2.3 hypothetical protein compare
PS417_00085 -1.4 -1.6 16S rRNA methyltransferase compare
PS417_08170 -1.4 -5.7 capsular biosynthesis protein compare
PS417_19275 -1.4 -0.8 hypothetical protein compare
PS417_23725 -1.4 -1.5 methylmalonate-semialdehyde dehydrogenase compare
PS417_00335 -1.4 -4.7 cytochrome B561 compare
PS417_00330 -1.4 -2.9 hypothetical protein compare
PS417_01955 -1.4 -5.9 peptidase compare
PS417_02070 -1.4 -0.7 membrane protein compare
PS417_00315 -1.4 -2.6 MFS transporter compare
PS417_02000 -1.4 -5.3 glutamate synthase compare
PS417_00305 -1.4 -6.8 cytochrome oxidase subunit I compare
PS417_00300 -1.4 -3.3 cytochrome B559 subunit alpha compare
PS417_08410 -1.4 -1.4 hypothetical protein compare
PS417_21585 -1.4 -3.8 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_22340 -1.4 -2.5 carbamate kinase compare
PS417_19860 -1.4 -6.3 flagellar hook protein FlgL compare
PS417_06895 -1.4 -2.7 DNA-binding protein compare
PS417_25895 -1.4 -1.4 glyoxalase compare
PS417_17545 -1.4 -1.2 2-oxoisovalerate dehydrogenase compare
PS417_27300 -1.4 -0.7 cell division protein ZapA compare
PS417_07845 -1.3 -1.7 transcriptional regulator compare


Specific Phenotypes

For 3 genes in this experiment