Experiment set10IT065 for Agrobacterium fabrum C58

Compare to:

methyl-beta-L-arabinopyranoside carbon source

200 most important genes:

  gene name fitness t score description  
Atu1141 -7.2 -7.0 Phosphoribosylglycinamide synthetase compare
Atu0679 -7.1 -4.9 ATP phosphoribosyltransferase compare
Atu0038 -6.7 -6.5 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu1750 -6.7 -6.5 phosphoribosyl c-AMP cyclohydrolase compare
Atu1687 -6.6 -10.0 anthranilate phosphoribosyltransferase compare
Atu2709 -6.4 -18.9 3-isopropylmalate dehydratase, large subunit compare
Atu1205 -6.3 -12.8 threonine dehydratase compare
Atu0432 -6.3 -10.5 O-succinylhomoserine sulfhydrylase compare
Atu0678 -6.2 -4.3 histidyl-tRNA synthetase compare
Atu3740 -6.2 -9.4 fructose bisphosphate aldolase compare
Atu2289 -6.0 -18.5 anthranilate synthase component I and II compare
Atu2036 -6.0 -14.5 acetolactate synthase III, large subunit compare
Atu3219 -6.0 -15.0 dihydroxy-acid dehydratase compare
Atu3754 -6.0 -5.2 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1307 -5.9 -10.3 dihydroorotase compare
Atu0099 -5.9 -13.7 prephenate dehydratase compare
Atu3706 -5.7 -7.9 D-3-phosphoglycerate dehydrogenase compare
Atu1140 -5.7 -7.0 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1688 -5.7 -6.8 indole-3-glycerol-phosphate synthase compare
Atu2718 -5.7 -8.7 homoserine O-succinyltransferase compare
Atu2264 -5.7 -14.6 2-isopropylmalate synthase compare
Atu3755 -5.5 -5.4 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu2791 -5.4 -10.3 3-isopropylmalate dehydrogenase compare
Atu1588 -5.3 -10.2 homoserine dehydrogenase compare
Atu0647 -5.3 -8.8 phosphoribosylamine--glycine ligase compare
Atu1075 -5.2 -10.0 amidophosphoribosyltransferase compare
Atu3885 -5.2 -9.3 inositol monophosphatase compare
Atu1844 -5.2 -4.5 Phosphoribosylformylglycinamidine synthetase compare
Atu0537 -5.2 -7.9 histidinol dehydrogenase compare
Atu0400 -5.2 -7.3 orotate phosphoribosyltransferase compare
Atu0041 -5.0 -3.4 glutamine amidotransferase compare
Atu1845 -4.9 -5.9 phosphoribosylformylglycinamidine synthase I compare
Atu2790 -4.8 -2.8 3-isopropylmalate dehydratase, small subunit compare
Atu1359 -4.8 -2.1 dnaK deletion suppressor protein compare
Atu0399 -4.8 -9.1 dihydroorotase compare
Atu2040 -4.7 -6.5 phosphoserine phosphatase compare
Atu2650 -4.7 -14.3 glycerol-3-phosphate dehydrogenase compare
Atu4505 -4.7 -11.7 LacI family transcriptional regulator compare
Atu0039 -4.7 -3.2 imidazoleglycerol-phosphate synthase cyclase compare
Atu0043 -4.7 -3.2 imidazoleglycerol-phosphate dehydratase compare
Atu0876 -4.7 -4.2 superoxide dismutase compare
Atu0017 -4.7 -4.5 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0035 -4.7 -9.0 phosphoenolpyruvate carboxykinase compare
Atu1308 -4.6 -10.2 aspartate carbamoyl transferase catalytic subunit compare
Atu3739 -4.6 -4.0 phosphoglycerate kinase compare
Atu0486 -4.5 -6.7 dihydroorotate dehydrogenase compare
Atu1850 -4.5 -5.8 phosphoribosylformylglycinamidine synthetase II compare
Atu0536 -4.5 -8.9 hypothetical protein compare
Atu0606 -4.4 -4.4 hypothetical protein compare
Atu3707 -4.3 -5.0 phosphoserine aminotransferase compare
Atu2747 -4.1 -13.4 hypothetical protein compare
Atu0298 -4.0 -11.1 orotidine 5 compare
Atu1620 -3.8 -14.8 triosephosphate isomerase compare
Atu1030 -3.7 -2.7 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0803 -3.7 -19.6 pyruvate,orthophosphate dikinase compare
Atu3469 -3.7 -3.5 phosphoglyceromutase compare
Atu0608 -3.5 -18.9 transcriptional regulator compare
Atu2015 -3.4 -12.5 aminotransferase compare
Atu3482 -3.3 -8.1 pantoate--beta-alanine ligase compare
Atu0040 -3.2 -1.9 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu4098 -3.2 -13.3 quinolinate synthetase compare
Atu3483 -3.1 -8.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu4096 -3.1 -8.9 nicotinate-nucleotide pyrophosphorylase compare
Atu2684 -3.0 -4.0 hypothetical protein compare
Atu0047 -3.0 -18.9 malate synthase G compare
Atu0607 -2.9 -19.4 isocitrate lyase compare
Atu1686 -2.8 -16.9 peptidyl-prolyl cis-trans isomerse D compare
Atu4773 -2.8 -3.3 two component response regulator compare
Atu3783 -2.7 -16.5 glutamate synthase subunit beta compare
Atu4097 -2.7 -12.4 L-aspartate oxidase compare
Atu1748 -2.7 -13.2 NIFU-like protein compare
Atu2115 -2.6 -13.7 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu1589 -2.5 -7.9 aminotransferase, class I compare
Atu0723 -2.3 -2.7 FAD dependent oxidoreductase compare
Atu3486 -2.3 -5.1 DeoR family transcriptional regulator compare
Atu1113 -2.3 -7.3 dehydrogenase compare
Atu3763 -2.3 -2.1 hypothetical protein compare
Atu3815 -2.2 -9.3 GntR family transcriptional regulator compare
Atu3784 -2.2 -17.6 glutamate synthase large subunit compare
Atu1463 -2.2 -6.7 glycine cleavage system component H compare
Atu1456 -2.1 -11.9 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu3731 -2.1 -7.6 5-formyltetrahydrofolate cyclo-ligase compare
Atu4685 -2.1 -7.5 LacI family transcriptional regulator compare
Atu0641 -2.1 -5.6 hypothetical protein compare
Atu4711 -2.0 -7.7 two component sensor kinase compare
Atu0434 -2.0 -3.6 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu1462 -1.9 -10.8 glycine cleavage system protein P2 compare
Atu0769 -1.9 -2.5 protoheme IX farnesyltransferase compare
Atu4317 -1.9 -5.7 TetR family transcriptional regulator compare
Atu4660 -1.8 -10.6 alpha-galactosidase compare
Atu2205 -1.8 -7.8 transcriptional regulator, MarR family compare
Atu1454 -1.8 -6.8 siroheme synthase compare
Atu0031 -1.7 -1.9 PTS system, IIA component compare
Atu2345 -1.7 -11.7 hypothetical protein compare
Atu2548 -1.7 -11.9 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu2155 -1.7 -12.4 methionine synthase compare
Atu2719 -1.6 -9.2 aldose epimerase compare
Atu1464 -1.6 -7.3 glycine cleavage system T protein, aminomethyltransferase compare
Atu5125 -1.6 -6.6 GntR family transcriptional regulator compare
Atu4541 -1.5 -4.3 carboxymuconolactone decarboxylase compare
Atu1446 -1.5 -2.7 two component response regulator compare
Atu2347 -1.5 -9.3 ABC transporter, nucleotide binding/ATPase protein (sugar) compare
Atu2348 -1.5 -7.8 sugar binding protein compare
Atu0422 -1.5 -3.0 ABC transporter, membrane spanning protein compare
Atu2346 -1.5 -9.4 ABC transporter, membrane spanning protein (sugar) compare
Atu0029 -1.5 -4.6 S-adenosylhomocysteine hydrolase compare
Atu2349 -1.4 -2.6 hypothetical protein compare
Atu6114 -1.4 -1.9 hypothetical protein compare
Atu1455 -1.4 -4.4 hypothetical protein compare
Atu2532 -1.4 -5.0 transcriptional regulator, MarR family compare
Atu8115 -1.4 -4.8 Hypothetical Protein compare
Atu2207 -1.3 -3.3 two component sensor kinase compare
Atu2125 -1.3 -1.3 ABC transporter, nucleotide binding/ATPase protein compare
Atu2633 -1.3 -1.7 RhtB family transporter compare
Atu1457 -1.2 -2.1 hypothetical protein compare
Atu2239 -1.2 -4.0 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu2745 -1.2 -9.5 acetyl-coenzyme A synthetase compare
Atu1546 -1.2 -3.4 transcriptional regulator, MerR family compare
Atu0062 -1.2 -7.8 transcriptional regulator, ROK family compare
Atu2225 -1.1 -7.1 transcriptional regulator compare
Atu4232 -1.1 -5.6 GntR family transcriptional regulator compare
Atu4659 -1.1 -5.5 AraC family transcriptional regulator compare
Atu4702 -1.1 -6.4 GntR family transcriptional regulator compare
Atu5160 -1.1 -3.2 transcriptional regulator protein compare
Atu4514 -1.0 -4.0 RpiR family transcriptional regulator compare
Atu2224 -1.0 -5.1 aldehyde dehydrogenase compare
Atu5540 -1.0 -1.3 hypothetical protein compare
Atu0771 -1.0 -6.4 cytochrome c oxidase subunit III compare
Atu4364 -1.0 -4.9 LacI family transcriptional regulator compare
Atu0346 -1.0 -3.4 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu3240 -1.0 -5.7 ROK family transcriptional regulator compare
Atu1714 -1.0 -1.7 exonuclease III compare
Atu3290 -1.0 -5.5 phosphomethylpyrimidine kinase compare
Atu0189 -0.9 -2.7 ABC transporter, membrane spanning protein (peptide) compare
Atu8162 -0.9 -1.6 hypothetical protein compare
Atu4618 -0.9 -6.0 dTDP-rhamnose-3,5-epimerase compare
Atu1904 -0.9 -3.6 transcriptional regulator compare
Atu0533 -0.9 -3.5 putative inhibitor of septum formation compare
Atu3577 -0.9 -5.3 transcriptional regulator compare
Atu0894 -0.9 -1.8 ABC transporter, membrane spanning protein compare
Atu5451 -0.9 -1.7 hypothetical protein compare
Atu3518 -0.9 -6.4 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
Atu4614 -0.9 -4.9 glycosyltransferase compare
Atu4674 -0.9 -6.0 GntR family transcriptional regulator compare
Atu2640 -0.9 -2.8 hypothetical protein compare
Atu0590 -0.9 -4.6 transcriptional regulator repressor compare
Atu3751 -0.9 -5.0 hypothetical protein compare
Atu4576 -0.9 -5.7 ROK family transcriptional regulator compare
Atu3485 -0.9 -4.4 short chain dehydrogenase compare
Atu0205 -0.9 -5.4 methylmalonate-semialdehyde dehydrogenase compare
Atu2662 -0.9 -1.3 acetyltransferase compare
Atu3353 -0.8 -5.6 mannose-1-phosphate guanylyltransferase compare
Atu2805 -0.8 -4.1 cobalamin synthesis protein compare
Atu0361 -0.8 -1.7 transcriptional regulator compare
Atu3963 -0.8 -4.9 GntR family transcriptional regulator compare
Atu2406 -0.8 -1.9 hypothetical protein compare
Atu0026 -0.8 -1.0 hypothetical protein compare
Atu2238 -0.8 -5.2 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu2439 -0.8 -1.3 hypothetical protein compare
Atu2201 -0.8 -2.4 hydrolase compare
Atu5163 -0.8 -3.2 type IV secretion protein AvhB2 compare
Atu3337 -0.8 -4.9 LacI family transcriptional regulator compare
Atu0702 -0.8 -2.1 calcium-binding protein, regucalcin compare
Atu1286 -0.8 -3.0 hypothetical protein compare
Atu2803 -0.8 -2.6 Cobalamin biosynthesis associated protein compare
Atu1074 -0.8 -5.6 NAD/NADP dependent oxidoreductase compare
Atu4148 -0.8 -3.4 UDP-glucuronic acid epimerase compare
Atu1685 -0.8 -1.0 hypothetical protein compare
Atu3608 -0.8 -3.6 hypothetical protein compare
Atu2209 -0.8 -2.2 pyrroline-5-carboxylate reductase compare
Atu2237 -0.8 -3.0 cytochrome c1 compare
Atu4615 -0.8 -5.5 glucose-1-phosphate thymidylyltransferase compare
Atu2569 -0.8 -5.7 thiamine biosynthesis protein compare
Atu4825 -0.8 -3.3 dehydrogenase compare
Atu2606 -0.8 -3.1 transcriptional regulator, GntR family compare
Atu4617 -0.8 -5.9 dTDP-D-glucose-4,6-dehydratase compare
Atu3005 -0.8 -1.0 hypothetical protein compare
Atu0852 -0.8 -2.5 transcriptional regulator, MarR family compare
Atu4616 -0.8 -1.3 dTDP-4-dehydrorhamnose reductase compare
Atu2067 -0.8 -0.9 hypothetical protein compare
Atu2821 -0.8 -3.8 transcriptional regulator, GntR family compare
Atu3248 -0.8 -4.7 cell division inhibitor compare
Atu0768 -0.8 -5.1 cytochrome-c oxidase chain I compare
Atu2183 -0.8 -4.3 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu5115 -0.7 -1.5 hypothetical protein compare
Atu3289 -0.7 -2.5 thiamine-phosphate pyrophosphorylase compare
Atu1439 -0.7 -1.4 hypothetical protein compare
Atu4792 -0.7 -1.4 hypothetical protein compare
Atu1405 -0.7 -3.3 transcriptional regulator, GntR family compare
Atu2768 -0.7 -2.5 hypothetical protein compare
Atu4481 -0.7 -3.6 LacI family transcriptional regulator compare
Atu1242 -0.7 -4.7 cytochrome oxidase assembly factor compare
Atu2376 -0.7 -0.6 hypothetical protein compare
Atu4613 -0.7 -5.6 glycosyltransferase compare
Atu0770 -0.7 -4.0 cytochrome C oxidase assembly protein compare
Atu8088 -0.7 -1.3 hypothetical protein compare
Atu0101 -0.7 -2.4 cytochrome c compare
Atu3264 -0.7 -3.1 IclR family transcriptional regulator compare
Atu3732 -0.7 -4.2 hemolysin compare
Atu2824 -0.7 -2.5 hypothetical protein compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source methyl-beta-L-arabinopyranoside in Agrobacterium fabrum C58

For carbon source methyl-beta-L-arabinopyranoside across organisms