Experiment set10IT064 for Pseudomonas simiae WCS417

Compare to:

soil sample 7; outgrowth in LB

200 most important genes:

  gene name fitness t score description  
PS417_13795 -7.4 -5.0 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_19725 -6.8 -3.9 flagellar biosynthesis protein FlhB compare
PS417_27865 -6.5 -2.8 LysR family transcriptional regulator compare
PS417_24835 -6.1 -4.7 hypothetical protein compare
PS417_14065 -6.1 -3.9 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_27040 -5.9 -2.2 3-phosphoglycerate dehydrogenase compare
PS417_01710 -5.8 -4.9 histidine utilization repressor compare
PS417_01855 -5.7 -2.1 phosphoribosyl-AMP cyclohydrolase compare
PS417_13820 -5.5 -6.0 UDP-glucose 6-dehydrogenase compare
PS417_13510 -5.1 -1.2 polyketide cyclase compare
PS417_04380 -5.0 -2.0 ABC transporter permease compare
PS417_23545 -5.0 -2.2 gamma-glutamyl kinase compare
PS417_08245 -5.0 -1.1 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_13800 -4.8 -3.2 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_20635 -4.8 -1.1 ABC transporter ATP-binding protein compare
PS417_18595 -4.8 -3.6 3-isopropylmalate dehydratase compare
PS417_02975 -4.7 -4.8 3-dehydroquinate dehydratase compare
PS417_23805 -4.7 -4.5 acetolactate synthase 3 regulatory subunit compare
PS417_27300 -4.7 -1.1 cell division protein ZapA compare
PS417_21430 -4.6 -2.9 3-oxoacyl-ACP synthase compare
PS417_27245 -4.6 -3.2 aminotransferase DegT compare
PS417_24705 -4.5 -3.1 D-alanyl-D-alanine carboxypeptidase compare
PS417_16005 -4.5 -2.5 ATPase compare
PS417_19835 -4.4 -1.4 flagellar biosynthesis protein FliS compare
PS417_09210 -4.4 -1.7 TetR family transcriptional regulator compare
PS417_23810 -4.3 -10.7 acetolactate synthase 3 catalytic subunit compare
PS417_02720 -4.3 -1.0 TetR family transcriptional regulator compare
PS417_06600 -4.3 -1.0 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_02510 -4.3 -5.0 ATP phosphoribosyltransferase regulatory subunit compare
PS417_20025 -4.2 -1.3 alpha-ribazole phosphatase compare
PS417_23375 -4.1 -1.3 cytochrome C oxidase compare
PS417_07710 -4.1 -7.2 membrane protein compare
PS417_05820 -4.1 -1.9 recombinase RecX compare
PS417_20985 -4.0 -2.2 porin compare
PS417_12355 -4.0 -2.5 magnesium chelatase compare
PS417_26985 -3.9 -2.9 phosphoenolpyruvate-protein phosphotransferase compare
PS417_04385 -3.9 -5.2 organic solvent ABC transporter substrate-binding protein compare
PS417_28230 -3.7 -3.1 transcriptional regulator compare
PS417_04420 -3.7 -6.3 histidinol dehydrogenase compare
PS417_18585 -3.7 -4.6 3-isopropylmalate dehydrogenase compare
PS417_22450 -3.7 -1.4 ATP-dependent DNA helicase RuvA compare
PS417_06375 -3.7 -0.8 deoxycytidine triphosphate deaminase compare
PS417_16720 -3.6 -1.1 membrane protein compare
PS417_00185 -3.6 -3.8 tryptophan synthase subunit beta compare
PS417_24745 -3.6 -3.0 gamma-glutamyl phosphate reductase compare
PS417_27795 -3.5 -0.8 orotate phosphoribosyltransferase compare
PS417_25650 -3.5 -3.0 anhydro-N-acetylmuramic acid kinase compare
PS417_16510 -3.4 -2.2 Clp protease ClpX compare
PS417_01580 -3.4 -1.0 imidazole glycerol phosphate synthase compare
PS417_08155 -3.4 -1.9 integration host factor subunit beta compare
PS417_04415 -3.4 -3.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_17780 -3.4 -1.1 Ais protein compare
PS417_13790 -3.4 -2.9 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_26890 -3.3 -5.6 dihydroxy-acid dehydratase compare
PS417_08135 -3.3 -5.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_06735 -3.3 -1.9 3-oxoadipate enol-lactonase compare
PS417_23770 -3.2 -1.6 exodeoxyribonuclease V subunit alpha compare
PS417_17565 -3.2 -2.4 branched-chain amino acid aminotransferase compare
PS417_01605 -3.2 -1.4 phosphoglycerate mutase compare
PS417_05160 -3.2 -1.0 DNA polymerase III subunit chi compare
PS417_16555 -3.1 -1.7 cupin compare
PS417_27870 -3.1 -3.5 ATP-dependent DNA helicase RecG compare
PS417_21630 -3.1 -2.4 magnesium transporter compare
PS417_23800 -3.1 -7.1 ketol-acid reductoisomerase compare
PS417_24710 -3.1 -3.8 lipoprotein compare
PS417_02560 -3.1 -1.9 23S rRNA methyltransferase compare
PS417_27195 -3.1 -1.0 N-acetylglutamate synthase compare
PS417_21125 -3.0 -5.0 phosphoadenosine phosphosulfate reductase compare
PS417_01565 -3.0 -2.7 imidazole glycerol phosphate synthase compare
PS417_12855 -3.0 -3.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_07560 -3.0 -1.1 universal stress protein UspA compare
PS417_02980 -3.0 -0.9 chemotaxis protein compare
PS417_19675 -3.0 -5.8 chemotaxis protein CheY compare
PS417_01560 -3.0 -1.9 imidazoleglycerol-phosphate dehydratase compare
PS417_03310 -3.0 -7.3 carbonate dehydratase compare
PS417_07640 -3.0 -2.4 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_04390 -2.9 -3.5 toluene tolerance protein compare
PS417_00385 -2.9 -0.9 Fur family transcriptional regulator compare
PS417_22565 -2.9 -0.6 formyltetrahydrofolate deformylase compare
PS417_24615 -2.8 -0.9 hypothetical protein compare
PS417_02805 -2.8 -1.5 urease subunit gamma compare
PS417_26805 -2.8 -0.9 cell division protein FtsE compare
PS417_04365 -2.8 -0.9 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_02005 -2.7 -7.8 glutamate synthase compare
PS417_14935 -2.7 -1.9 transposase compare
PS417_22175 -2.7 -1.2 amino acid transporter LysE compare
PS417_22775 -2.7 -6.8 histidine kinase compare
PS417_01575 -2.7 -2.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_21655 -2.7 -0.8 aspartate kinase compare
PS417_17545 -2.7 -3.4 2-oxoisovalerate dehydrogenase compare
PS417_26730 -2.6 -0.8 pyrroline-5-carboxylate reductase compare
PS417_18570 -2.6 -3.0 peptidoglycan-binding protein compare
PS417_21480 -2.6 -1.4 23S rRNA pseudouridylate synthase compare
PS417_27005 -2.6 -0.8 membrane protein compare
PS417_19955 -2.6 -1.6 hypothetical protein compare
PS417_27490 -2.5 -1.7 hypothetical protein compare
PS417_21585 -2.5 -5.4 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_21510 -2.5 -1.8 histidine kinase compare
PS417_03455 -2.5 -1.3 type III secretion protein compare
PS417_19880 -2.5 -5.2 flagellar basal body L-ring protein compare
PS417_21830 -2.5 -3.0 TetR family transcriptional regulator compare
PS417_19790 -2.5 -2.2 ATP synthase compare
PS417_12695 -2.5 -3.6 mannitol dehydrogenase compare
PS417_01850 -2.5 -4.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_06245 -2.4 -1.6 zinc metallopeptidase RseP compare
PS417_26990 -2.4 -1.1 RNA pyrophosphohydrolase compare
PS417_26745 -2.4 -4.7 methionine biosynthesis protein MetW compare
PS417_19850 -2.4 -7.0 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_18530 -2.4 -4.9 O-succinylhomoserine sulfhydrylase compare
PS417_19735 -2.4 -3.5 flagellar biosynthesis protein FliQ compare
PS417_08580 -2.4 -5.2 histidine kinase compare
PS417_01995 -2.4 -1.7 hypothetical protein compare
PS417_06865 -2.3 -2.1 transporter compare
PS417_19840 -2.3 -7.2 flagellar cap protein FliD compare
PS417_16990 -2.3 -2.6 acyl-CoA dehydrogenase compare
PS417_08220 -2.3 -0.7 epimerase compare
PS417_00180 -2.3 -2.0 tryptophan synthase subunit alpha compare
PS417_23025 -2.3 -5.4 murein transglycosylase compare
PS417_06680 -2.3 -6.6 nuclease PIN compare
PS417_01340 -2.3 -3.7 agmatine deiminase compare
PS417_12805 -2.3 -6.8 glycogen branching protein compare
PS417_04270 -2.3 -5.2 ribonuclease G compare
PS417_25720 -2.3 -3.6 anthranilate synthase component II compare
PS417_17070 -2.3 -1.7 RNA polymerase subunit sigma-24 compare
PS417_22445 -2.3 -2.1 ATP-dependent DNA helicase RuvB compare
PS417_22780 -2.2 -2.0 XRE family transcriptional regulator compare
PS417_05815 -2.2 -2.4 recombinase RecA compare
PS417_04875 -2.2 -1.2 molybdenum cofactor biosynthesis protein MoaE compare
PS417_00330 -2.2 -4.5 hypothetical protein compare
PS417_23915 -2.2 -2.6 pantoate--beta-alanine ligase compare
PS417_19785 -2.2 -2.2 flagellar biogenesis protein compare
PS417_27800 -2.2 -4.4 exodeoxyribonuclease III compare
PS417_13805 -2.2 -4.3 4-amino-4-deoxy-L-arabinose transferase compare
PS417_23385 -2.2 -5.8 cytochrome o ubiquinol oxidase subunit I compare
PS417_19870 -2.2 -2.4 flagellar rod assembly protein FlgJ compare
PS417_10985 -2.1 -1.0 NADH:flavin oxidoreductase compare
PS417_23910 -2.1 -3.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_24800 -2.1 -3.4 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_02415 -2.1 -3.7 phosphoserine phosphatase compare
PS417_25645 -2.1 -4.1 peptidase M23 compare
PS417_25710 -2.1 -1.1 indole-3-glycerol-phosphate synthase compare
PS417_12935 -2.1 -1.9 RNA polymerase sigma factor compare
PS417_00315 -2.1 -2.8 MFS transporter compare
PS417_19690 -2.1 -4.2 histidine kinase compare
PS417_22520 -2.0 -1.6 histidine kinase compare
PS417_19415 -2.0 -1.9 allantoinase compare
PS417_15325 -2.0 -0.9 type VI secretion protein compare
PS417_23615 -2.0 -2.1 sulfate transporter compare
PS417_27305 -2.0 -5.6 5-formyltetrahydrofolate cyclo-ligase compare
PS417_22840 -2.0 -1.3 tRNA-Met compare
PS417_19425 -2.0 -0.8 allantoicase compare
PS417_05595 -2.0 -3.3 ornithine carbamoyltransferase compare
PS417_13735 -2.0 -1.3 hypothetical protein compare
PS417_02000 -2.0 -7.2 glutamate synthase compare
PS417_21570 -2.0 -2.4 flagellar basal body rod protein FlgB compare
PS417_19860 -1.9 -7.2 flagellar hook protein FlgL compare
PS417_23390 -1.9 -4.2 ubiquinol oxidase subunit II compare
PS417_23775 -1.9 -1.2 exodeoxyribonuclease V subunit beta compare
PS417_18390 -1.9 -4.6 LacI family transcriptional regulator compare
PS417_06540 -1.9 -0.9 membrane protein compare
PS417_17795 -1.9 -1.4 ABC transporter permease compare
PS417_05785 -1.9 -4.1 tail protein compare
PS417_17240 -1.9 -1.8 trigger factor compare
PS417_19695 -1.9 -4.0 flagellar biosynthesis sigma factor compare
PS417_03385 -1.9 -1.0 flavin reductase compare
PS417_26740 -1.9 -4.5 homoserine acetyltransferase compare
PS417_21575 -1.9 -4.1 chemotaxis protein compare
PS417_06780 -1.9 -1.8 TetR family transcriptional regulator compare
PS417_19740 -1.9 -3.7 flagellar biosynthesis protein flip compare
PS417_15085 -1.9 -3.4 ATPase AAA compare
PS417_19795 -1.8 -4.5 flagellar assembly protein FliH compare
PS417_02255 -1.8 -1.6 lipopolysaccharide kinase compare
PS417_21595 -1.8 -2.4 flagellar biosynthesis protein FlgN compare
PS417_27585 -1.8 -1.0 diaminopimelate epimerase compare
PS417_09470 -1.8 -0.9 hypothetical protein compare
PS417_23110 -1.8 -5.2 2-isopropylmalate synthase compare
PS417_08225 -1.8 -3.0 acetolactate synthase compare
PS417_27135 -1.8 -0.6 glutamine synthetase compare
PS417_03970 -1.8 -1.1 1-phosphofructokinase compare
PS417_02955 -1.8 -2.3 hypothetical protein compare
PS417_26420 -1.8 -1.1 hypothetical protein compare
PS417_26220 -1.8 -1.4 Rieske (2Fe-2S) protein compare
PS417_19865 -1.8 -5.1 flagellar hook protein FlgK compare
PS417_05065 -1.8 -1.1 hypothetical protein compare
PS417_27180 -1.8 -1.3 peroxidase compare
PS417_24895 -1.8 -0.9 hypothetical protein compare
PS417_25835 -1.8 -5.9 hypothetical protein compare
PS417_22690 -1.7 -2.9 phosphogluconate dehydratase compare
PS417_19665 -1.7 -2.0 flagellar motor protein MotD compare
PS417_26230 -1.7 -2.3 electron transfer flavoprotein subunit alpha compare
PS417_08540 -1.7 -1.6 RNA helicase compare
PS417_07470 -1.7 -1.1 hypothetical protein compare
PS417_24290 -1.7 -1.9 hypothetical protein compare
PS417_01435 -1.7 -0.9 hypothetical protein compare
PS417_23370 -1.7 -1.8 protoheme IX farnesyltransferase compare
PS417_12120 -1.7 -2.6 IclR family transcriptional regulator compare
PS417_26995 -1.7 -3.7 phosphoserine phosphatase compare
PS417_17215 -1.7 -2.0 peptidylprolyl isomerase compare
PS417_28140 -1.6 -1.2 asparaginase compare
PS417_07770 -1.6 -1.1 hypothetical protein compare


Specific Phenotypes

For 6 genes in this experiment