Experiment set10IT064 for Pseudomonas putida KT2440

Compare to:

D-Glucose carbon source 5 mM

200 most detrimental genes:

  gene name fitness t score description  
PP_0406 +2.8 23.7 Nucleotidyltransferase family protein compare
PP_0547 +2.7 14.9 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_0138 +2.7 22.5 conserved membrane protein of unknown function compare
PP_1623 +2.6 16.4 RNA polymerase, sigma S (sigma 38) factor compare
PP_1355 +1.8 17.9 Muropeptide permease AmpG compare
PP_4994 +1.5 8.2 conserved protein of unknown function compare
PP_2145 +1.3 7.5 beta-N-acetylglucosaminidase compare
PP_1058 +1.3 10.9 conserved protein of unknown function compare
PP_1186 +1.2 3.6 two component system DNA-binding transcriptional dual regulator compare
PP_3971 +1.2 3.1 conserved protein of unknown function compare
PP_1325 +1.2 6.2 putative lipoprotein compare
PP_4342 +1.2 3.4 flagellar synthesis regulator, putative ATPase compare
PP_5145 +1.1 11.1 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_4701 +1.0 1.7 glucose-6-phosphate isomerase compare
PP_5084 +1.0 7.9 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_0962 +1.0 2.8 toluene-tolerance protein compare
PP_0001 +0.9 1.1 probable chromosome-partitioning protein compare
PP_2144 +0.9 3.0 Transcriptional regulator, TetR family compare
PP_1898 +0.9 3.4 MotA/TolQ/ExbB proton channel family protein compare
PP_5495 +0.8 1.4 protein of unknown function compare
PP_3519 +0.8 1.7 putative Lipoprotein compare
PP_2748 +0.8 2.0 putative Branched-chain amino acid ABC transporter, ATP-binding protein compare
PP_1344 +0.8 1.6 conserved protein of unknown function compare
PP_1999 +0.8 2.3 membrane protein required for colicin V production compare
PP_5053 +0.8 4.1 Protein-export protein SecB compare
PP_5027 +0.8 1.0 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_1294 +0.8 3.0 molybdopterin synthase large subunit compare
PP_5058 +0.8 3.2 Carboxy-terminal-processing protease compare
PP_2972 +0.8 1.2 conserved protein of unknown function compare
PP_0396 +0.8 6.2 conserved protein of unknown function compare
PP_2152 +0.7 2.9 glycerophosphoryl diester phosphodiesterase compare
PP_2163 +0.7 4.4 VacJ lipoprotein compare
PP_0640 +0.7 2.3 conserved protein of unknown function compare
PP_2611 +0.7 2.6 membrane protein of unknown function compare
PP_1891 +0.7 3.7 Type 1 pili subunit FimI compare
PP_3810 +0.7 2.1 conserved protein of unknown function compare
PP_0719 +0.7 1.1 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_3866 +0.7 3.3 conserved protein of unknown function compare
PP_2104 +0.7 3.1 conserved membrane protein of unknown function compare
PP_2863 +0.7 3.9 conserved membrane protein of unknown function compare
PP_2568 +0.7 1.0 Ring-cleaving dioxygenase compare
PP_4156 +0.7 1.4 Transcriptional regulator, LysR family compare
PP_1778 +0.7 2.6 Lipopolysaccharide ABC export system, permease protein compare
PP_4129 +0.7 1.8 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_5225 +0.7 1.4 frataxin compare
PP_1097 +0.6 1.1 Methionine--tRNA ligase compare
PP_0948 +0.6 2.3 Phosphocarrier protein HPr compare
PP_0287 +0.6 4.0 conserved exported protein of unknown function compare
PP_0540 +0.6 3.2 conserved inner membrane protein compare
PP_5507 +0.6 2.9 protein of unknown function compare
PP_0566 +0.6 0.9 translation-related factor compare
PP_0937 +0.6 3.5 endoribonuclease G (RNAse G) compare
PP_4917 +0.6 1.8 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_2130 +0.6 3.6 putative Soluble lytic transglycosylase compare
PP_4058 +0.6 4.3 1,4-alpha-glucan branching enzyme compare
PP_1224 +0.6 3.7 periplasmic subunit of the TolQRA transport system compare
PP_3245 +0.6 0.7 conserved protein of unknown function compare
PP_3908 +0.6 2.1 conserved protein of unknown function compare
PP_0395 +0.6 5.0 putative type IV piliation protein compare
PP_5001 +0.6 2.0 protease HslVU, ATPase component compare
PP_0508 +0.6 2.4 conserved exported protein of unknown function compare
PP_4069 +0.6 1.8 conserved protein of unknown function compare
PP_4817 +0.6 1.9 MaoC domain protein compare
PP_4937 +0.6 2.4 toluene tolerance protein compare
PP_2900 +0.6 1.6 conserved protein of unknown function compare
PP_1584 +0.6 3.4 conserved protein of unknown function compare
PP_1208 +0.6 1.8 conserved protein of unknown function, SlyX family compare
PP_1528 +0.6 0.9 conserved protein of unknown function compare
PP_2726 +0.6 2.0 conserved membrane protein of unknown function compare
PP_0711 +0.6 1.3 putative hydrolase compare
PP_1178 +0.6 2.1 conserved protein of unknown function compare
PP_1650 +0.6 5.6 Sensor protein GacS compare
PP_4171 +0.6 4.8 conserved exported protein of unknown function compare
PP_5701 +0.6 1.0 conserved protein of unknown function compare
PP_2725 +0.6 1.9 Protease PfpI compare
PP_1552 +0.6 1.9 putative Phage replication protein compare
PP_4769 +0.6 2.4 conserved protein of unknown function compare
PP_2387 +0.6 1.3 conserved protein of unknown function compare
PP_5309 +0.6 0.6 oxidative and nitrosative stress transcriptional dual regulator compare
PP_0596 +0.5 3.9 Omega-amino acid--pyruvate aminotransferase compare
PP_3295 +0.5 1.5 YeeE/YedE family protein compare
PP_4099 +0.5 5.0 two-componenent system BarA/UvrY - regulatory subunit compare
PP_4902 +0.5 1.3 Oligoribonuclease compare
PP_0610 +0.5 1.7 conserved exported protein of unknown function compare
PP_3378 +0.5 1.0 putative 2-ketogluconokinase compare
PP_0397 +0.5 4.6 protein kinase compare
PP_5217 +0.5 4.8 Polyphosphate kinase compare
PP_4797 +0.5 1.0 conserved protein of unknown function compare
PP_4895 +0.5 1.2 tRNA dimethylallyltransferase compare
PP_5575 +0.5 1.1 conserved protein of unknown function compare
PP_5278 +0.5 2.5 4-guanidinobutyraldehyde dehydrogenase compare
PP_1198 +0.5 2.1 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4204 +0.5 1.8 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_0512 +0.5 1.5 hypothetical protein compare
PP_5428 +0.5 3.0 conserved exported protein of unknown function compare
PP_1763 +0.5 1.5 putative oxidoreductase compare
PP_3876 +0.5 1.7 conserved protein of unknown function compare
PP_2616 +0.5 2.5 conserved protein of unknown function compare
PP_3693 +0.5 2.2 putative Transcriptional regulator MvaT, P16 subunit compare
PP_0960 +0.5 2.5 phospholipid ABC transporter binding protein compare
PP_2098 +0.5 3.4 D-alanyl-D-alanine carboxypeptidase compare
PP_3597 +0.5 1.9 L-lysine and D-lysine ABC transporter, ATPase component (from data) compare
PP_2191 +0.5 2.3 putative Lipoprotein compare
PP_0856 +0.5 1.7 conserved lipoprotein of unknown function compare
PP_5223 +0.5 2.7 regulator of nucleotide diphosphokinase compare
PP_4593 +0.5 0.8 conserved protein of unknown function compare
PP_2745 +0.5 2.3 Universal stress protein family compare
PP_5558 +0.5 2.0 putative transcriptional xre family of phage origin compare
PP_3476 +0.5 2.1 Type II secretion system protein G compare
PP_3376 +0.5 2.4 putative phosphonate dehydrogenase compare
PP_2073 +0.5 1.1 Acetyltransferase, GNAT family compare
PP_0848 +0.5 0.9 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_1237 +0.5 0.8 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4692 +0.5 3.6 putative aspartate/tyrosine/aromatic aminotransferase compare
PP_0123 +0.5 2.6 DNA polymerase I, 5 compare
PP_2539 +0.5 2.4 Transcriptional regulator, LysR family compare
PP_1428 +0.5 0.8 Sigma factor AlgU negative regulatory protein compare
PP_5337 +0.5 2.3 LysR family transcriptional regulator compare
PP_2889 +0.5 1.7 putative Transmembrane regulator PrtR compare
PP_5514 +0.5 2.3 conserved protein of unknown function compare
PP_4835 +0.5 1.6 conserved exported protein of unknown function compare
PP_1326 +0.5 1.0 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_5248 +0.5 0.5 putative hydrolase compare
PP_4073 +0.5 1.2 conserved exported protein of unknown function compare
PP_0852 +0.5 1.5 Transcriptional regulator, Cro/CI family compare
PP_1111 +0.5 2.7 putative Synthetase compare
PP_3314 +0.5 1.8 Heat shock protein, HSP20 family compare
PP_1309 +0.5 3.3 conserved exported protein of unknown function compare
PP_5156 +0.5 1.9 conserved exported protein of unknown function compare
PP_0905 +0.5 1.2 conserved exported protein of unknown function compare
PP_2136 +0.5 1.7 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_0007 +0.5 1.7 conserved hypothetical protein compare
PP_1647 +0.5 1.8 conserved protein of unknown function compare
PP_1906 +0.5 1.7 ribosomal large subunit pseudouridine synthase C compare
PP_4785 +0.5 2.6 conserved exported protein of unknown function compare
PP_5674 +0.5 1.2 conserved protein of unknown function compare
PP_0846 +0.5 0.6 DnaK-like molecular chaperone specific for IscU compare
PP_2076 +0.5 2.5 conserved protein of unknown function compare
PP_1571 +0.5 1.9 conserved protein of unknown function compare
PP_2402 +0.4 0.8 putative Sensor histidine kinase compare
PP_5329 +0.4 2.1 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_3850 +0.4 2.0 conserved protein of unknown function compare
PP_2581 +0.4 0.8 conserved protein of unknown function compare
PP_3924 +0.4 1.9 conserved protein of unknown function compare
PP_3634 +0.4 2.0 putative acetyltransferase, GNAT family compare
PP_1565 +0.4 2.7 Phage portal protein, HK97 family compare
PP_3105 +0.4 1.3 conserved membrane protein of unknown function compare
PP_2189 +0.4 2.1 conserved protein of unknown function compare
PP_1777 +0.4 3.4 phosphomannomutase compare
PP_5310 +0.4 1.8 junction-specific ATP-dependent DNA helicase compare
PP_4008 +0.4 2.6 ATP-dependent serine protease compare
PP_1548 +0.4 1.3 conserved protein of unknown function compare
PP_5382 +0.4 2.5 putative exported protein compare
PP_4329 +0.4 0.7 FlhB domain protein compare
PP_2697 +0.4 1.7 putative oxidoreductase containing a flavin reductase domain compare
PP_0195 +0.4 1.3 conserved protein of unknown function compare
PP_5452 +0.4 1.9 protein of unknown function compare
PP_1644 +0.4 2.0 NAD(P)H dehydrogenase (quinone) compare
PP_1742 +0.4 1.2 conserved inner membrane protein of unknown function compare
PP_2243 +0.4 2.2 conserved protein of unknown function compare
PP_2675 +0.4 1.9 Cytochrome c-type protein compare
PP_1189 +0.4 1.7 conserved hypothetical protein compare
PP_5648 +0.4 2.3 conserved exported protein of unknown function compare
PP_5557 +0.4 1.3 protein of unknown function compare
PP_0855 +0.4 1.1 conserved protein of unknown function compare
PP_0405 +0.4 3.7 conserved protein of unknown function compare
PP_1445 +0.4 2.8 carbohydrate-selective porin compare
PP_1987 +0.4 1.2 Methlytransferase, UbiE/COQ5 family compare
PP_4213 +0.4 1.0 putative dipeptidase compare
PP_0168 +0.4 3.9 putative surface adhesion protein compare
PP_2777 +0.4 1.6 putative Acyl carrier protein compare
PP_3635 +0.4 2.2 putative Sulfonate ABC transporter, permease protein compare
PP_0979 +0.4 1.1 DNA polymerase III subunit chi compare
PP_2772 +0.4 1.6 putative Monooxygenase compare
PP_2939 +0.4 1.2 toxin of the YefM-YoeB antitoxin/toxin complex and DNA-binding transcriptional repressor compare
PP_4981 +0.4 0.5 polyisoprene-binding protein, acidic stress response factor compare
PP_3204 +0.4 1.4 conserved protein of unknown function compare
PP_2759 +0.4 1.3 ribose ABC transporter - ATP-binding subunit compare
PP_5052 +0.4 1.9 tRNA(Leu) mC34,mU34 2'-O-ribose methyltransferase, AdoMet-dependent compare
PP_4665 +0.4 2.1 conserved protein of unknown function compare
PP_5609 +0.4 1.4 conserved protein of unknown function compare
PP_1095 +0.4 2.3 putative electron transport complex protein compare
PP_2705 +0.4 1.9 conserved protein of unknown function compare
PP_2299 +0.4 1.4 Trigger factor compare
PP_2341 +0.4 0.6 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_0119 +0.4 2.3 putative zinc uptake regulation protein ZUR compare
PP_4251 +0.4 2.1 cytochrome c oxidase subunit, cbb3-type compare
PP_1803 +0.4 3.2 UDP-sugar epimerase compare
PP_1553 +0.4 1.1 conserved protein of unknown function compare
PP_5054 +0.4 1.0 glutaredoxin 3 compare
PP_1109 +0.4 3.2 Transcriptional regulator, GntR family compare
PP_2093 +0.4 2.1 NasT compare
PP_2540 +0.4 0.8 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_2087 +0.4 1.1 CmpX protein compare
PP_5552 +0.4 1.4 conserved protein of unknown function compare
PP_1556 +0.4 0.9 conserved protein of unknown function compare
PP_4367 +0.4 1.7 Flagellar assembly protein FliH compare
PP_4837 +0.4 1.1 conserved protein of unknown function compare
PP_0185 +0.4 2.4 Positive alginate biosynthesis regulatory protein compare
PP_4426 +0.4 1.1 Amino acid ABC transporter, permease protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in carbon source experiments

For carbon source D-Glucose across organisms