Experiment set10IT063 for Pseudomonas simiae WCS417

Compare to:

soil sample 6; outgrowth in LB

200 most important genes:

  gene name fitness t score description  
PS417_24835 -7.0 -4.8 hypothetical protein compare
PS417_13800 -6.9 -3.8 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_27865 -6.3 -3.3 LysR family transcriptional regulator compare
PS417_14065 -5.4 -4.4 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_06530 -5.1 -3.1 membrane protein compare
PS417_23545 -4.9 -2.6 gamma-glutamyl kinase compare
PS417_04380 -4.8 -2.3 ABC transporter permease compare
PS417_26985 -4.8 -4.6 phosphoenolpyruvate-protein phosphotransferase compare
PS417_18600 -4.6 -3.0 isopropylmalate isomerase compare
PS417_04385 -4.6 -4.5 organic solvent ABC transporter substrate-binding protein compare
PS417_19835 -4.4 -1.7 flagellar biosynthesis protein FliS compare
PS417_13820 -4.3 -5.7 UDP-glucose 6-dehydrogenase compare
PS417_02975 -4.2 -4.8 3-dehydroquinate dehydratase compare
PS417_07620 -4.1 -1.4 beta-hexosaminidase compare
PS417_16510 -4.0 -2.7 Clp protease ClpX compare
PS417_13795 -3.9 -6.3 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_16005 -3.9 -3.5 ATPase compare
PS417_23995 -3.9 -1.1 preprotein translocase subunit SecG compare
PS417_01575 -3.8 -4.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_13790 -3.8 -5.1 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_24710 -3.7 -5.3 lipoprotein compare
PS417_22445 -3.7 -3.2 ATP-dependent DNA helicase RuvB compare
PS417_01710 -3.7 -4.1 histidine utilization repressor compare
PS417_01855 -3.7 -2.9 phosphoribosyl-AMP cyclohydrolase compare
PS417_16990 -3.7 -5.7 acyl-CoA dehydrogenase compare
PS417_06375 -3.6 -1.0 deoxycytidine triphosphate deaminase compare
PS417_22450 -3.6 -1.7 ATP-dependent DNA helicase RuvA compare
PS417_21630 -3.5 -2.4 magnesium transporter compare
PS417_08135 -3.5 -5.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_20855 -3.5 -1.4 hypothetical protein compare
PS417_18595 -3.4 -3.6 3-isopropylmalate dehydratase compare
PS417_22780 -3.4 -5.0 XRE family transcriptional regulator compare
PS417_24745 -3.4 -3.5 gamma-glutamyl phosphate reductase compare
PS417_04375 -3.3 -2.3 ABC transporter ATP-binding protein compare
PS417_01580 -3.3 -1.2 imidazole glycerol phosphate synthase compare
PS417_26990 -3.3 -1.3 RNA pyrophosphohydrolase compare
PS417_27795 -3.3 -0.9 orotate phosphoribosyltransferase compare
PS417_08125 -3.3 -0.9 prephenate dehydratase compare
PS417_01570 -3.2 -1.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_27040 -3.2 -3.0 3-phosphoglycerate dehydrogenase compare
PS417_04415 -3.1 -6.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_00370 -3.1 -1.2 hypothetical protein compare
PS417_02280 -3.1 -1.9 GlcNAc-PI de-N-acetylase compare
PS417_06680 -3.1 -6.6 nuclease PIN compare
PS417_04585 -3.1 -2.1 hypothetical protein compare
PS417_23805 -3.1 -4.5 acetolactate synthase 3 regulatory subunit compare
PS417_01565 -3.1 -3.2 imidazole glycerol phosphate synthase compare
PS417_26685 -3.1 -2.7 hypothetical protein compare
PS417_19665 -3.1 -4.0 flagellar motor protein MotD compare
PS417_23800 -3.0 -10.4 ketol-acid reductoisomerase compare
PS417_27245 -3.0 -3.2 aminotransferase DegT compare
PS417_23385 -3.0 -7.2 cytochrome o ubiquinol oxidase subunit I compare
PS417_21000 -3.0 -1.7 CrfX protein compare
PS417_17240 -3.0 -2.6 trigger factor compare
PS417_13805 -3.0 -6.5 4-amino-4-deoxy-L-arabinose transferase compare
PS417_02415 -3.0 -4.4 phosphoserine phosphatase compare
PS417_18585 -2.9 -4.2 3-isopropylmalate dehydrogenase compare
PS417_07560 -2.9 -1.3 universal stress protein UspA compare
PS417_18540 -2.9 -3.0 colicin V production CvpA compare
PS417_02510 -2.8 -6.6 ATP phosphoribosyltransferase regulatory subunit compare
PS417_20635 -2.8 -1.1 ABC transporter ATP-binding protein compare
PS417_23810 -2.8 -6.7 acetolactate synthase 3 catalytic subunit compare
PS417_26175 -2.8 -1.1 sarcosine oxidase subunit gamma compare
PS417_15215 -2.7 -1.9 protein activator of alkane oxidation PraA compare
PS417_23250 -2.7 -5.6 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_03935 -2.7 -2.7 N-acetyl-anhydromuranmyl-L-alanine amidase compare
PS417_18390 -2.7 -5.4 LacI family transcriptional regulator compare
PS417_21430 -2.7 -2.0 3-oxoacyl-ACP synthase compare
PS417_19425 -2.7 -1.1 allantoicase compare
PS417_04420 -2.7 -7.1 histidinol dehydrogenase compare
PS417_01920 -2.6 -1.4 ATP-dependent protease subunit HslV compare
PS417_09210 -2.6 -1.6 TetR family transcriptional regulator compare
PS417_09085 -2.6 -1.3 hypothetical protein compare
PS417_23380 -2.6 -2.1 cytochrome o ubiquinol oxidase subunit III compare
PS417_22775 -2.6 -6.5 histidine kinase compare
PS417_02005 -2.6 -7.2 glutamate synthase compare
PS417_08580 -2.6 -5.1 histidine kinase compare
PS417_00535 -2.6 -2.7 Holliday junction resolvase compare
PS417_23390 -2.5 -6.3 ubiquinol oxidase subunit II compare
PS417_05790 -2.5 -3.6 hypothetical protein compare
PS417_03310 -2.5 -5.6 carbonate dehydratase compare
PS417_10305 -2.4 -2.1 hypothetical protein compare
PS417_08730 -2.4 -1.7 cytochrome C compare
PS417_26730 -2.4 -0.9 pyrroline-5-carboxylate reductase compare
PS417_04875 -2.4 -1.2 molybdenum cofactor biosynthesis protein MoaE compare
PS417_22850 -2.4 -5.8 virulence factor family protein compare
PS417_06245 -2.4 -2.2 zinc metallopeptidase RseP compare
PS417_07710 -2.4 -5.8 membrane protein compare
PS417_22520 -2.4 -1.7 histidine kinase compare
PS417_18530 -2.4 -6.1 O-succinylhomoserine sulfhydrylase compare
PS417_13510 -2.4 -1.1 polyketide cyclase compare
PS417_04050 -2.4 -2.1 peptide ABC transporter ATP-binding protein compare
PS417_26745 -2.4 -3.4 methionine biosynthesis protein MetW compare
PS417_12855 -2.3 -3.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_04340 -2.3 -3.8 ribosome hibernation promoting factor HPF compare
PS417_04270 -2.3 -4.8 ribonuclease G compare
PS417_25390 -2.3 -4.8 MFS transporter compare
PS417_09915 -2.3 -1.4 hypothetical protein compare
PS417_19730 -2.2 -1.4 flagellar biosynthesis protein FliR compare
PS417_24800 -2.2 -3.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_07170 -2.2 -3.8 hypothetical protein compare
PS417_28220 -2.2 -2.0 LysR family transcriptional regulator compare
PS417_19850 -2.2 -4.7 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_20775 -2.2 -3.5 coproporphyrinogen III oxidase compare
PS417_23775 -2.2 -1.3 exodeoxyribonuclease V subunit beta compare
PS417_17565 -2.2 -2.3 branched-chain amino acid aminotransferase compare
PS417_04595 -2.2 -2.2 cell division protein MraZ compare
PS417_21510 -2.2 -1.5 histidine kinase compare
PS417_23755 -2.1 -2.1 membrane protein compare
PS417_02990 -2.1 -3.1 hypothetical protein compare
PS417_22815 -2.1 -6.0 permease compare
PS417_01850 -2.1 -4.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_23770 -2.1 -2.2 exodeoxyribonuclease V subunit alpha compare
PS417_02000 -2.1 -8.0 glutamate synthase compare
PS417_00315 -2.1 -3.2 MFS transporter compare
PS417_04390 -2.1 -3.2 toluene tolerance protein compare
PS417_23370 -2.1 -3.6 protoheme IX farnesyltransferase compare
PS417_26890 -2.1 -4.2 dihydroxy-acid dehydratase compare
PS417_23375 -2.1 -1.5 cytochrome C oxidase compare
PS417_24705 -2.0 -2.7 D-alanyl-D-alanine carboxypeptidase compare
PS417_05815 -2.0 -2.2 recombinase RecA compare
PS417_06075 -2.0 -1.5 hypothetical protein compare
PS417_26240 -2.0 -1.9 N-methylproline demethylase compare
PS417_23025 -2.0 -5.9 murein transglycosylase compare
PS417_24785 -2.0 -1.4 nucleoside-diphosphate sugar epimerase compare
PS417_24155 -2.0 -1.9 ATP-binding protein compare
PS417_10985 -2.0 -1.1 NADH:flavin oxidoreductase compare
PS417_21570 -2.0 -3.7 flagellar basal body rod protein FlgB compare
PS417_19675 -2.0 -3.8 chemotaxis protein CheY compare
PS417_27585 -1.9 -1.5 diaminopimelate epimerase compare
PS417_19350 -1.9 -3.0 GTP cyclohydrolase compare
PS417_00385 -1.9 -0.9 Fur family transcriptional regulator compare
PS417_04275 -1.9 -9.3 hypothetical protein compare
PS417_26815 -1.9 -2.2 peptidase M16 compare
PS417_19840 -1.9 -6.5 flagellar cap protein FliD compare
PS417_27195 -1.9 -1.0 N-acetylglutamate synthase compare
PS417_17840 -1.9 -2.2 betaine-aldehyde dehydrogenase compare
PS417_08540 -1.9 -1.9 RNA helicase compare
PS417_01605 -1.9 -1.4 phosphoglycerate mutase compare
PS417_22350 -1.9 -1.8 Fis family transcriptional regulator compare
PS417_16500 -1.8 -5.6 arginyl-tRNA-protein transferase compare
PS417_19860 -1.8 -6.7 flagellar hook protein FlgL compare
PS417_25725 -1.8 -7.8 anthranilate synthase component I compare
PS417_26740 -1.8 -3.1 homoserine acetyltransferase compare
PS417_23915 -1.7 -3.2 pantoate--beta-alanine ligase compare
PS417_12120 -1.7 -3.3 IclR family transcriptional regulator compare
PS417_19690 -1.7 -4.0 histidine kinase compare
PS417_05475 -1.7 -2.2 arginase compare
PS417_21555 -1.7 -4.8 flagellar hook protein FlgE compare
PS417_00310 -1.7 -2.8 cysteine synthase compare
PS417_21070 -1.7 -2.1 aconitate hydratase compare
PS417_23110 -1.7 -4.2 2-isopropylmalate synthase compare
PS417_13010 -1.7 -1.2 alpha/beta hydrolase compare
PS417_02560 -1.7 -1.7 23S rRNA methyltransferase compare
PS417_19745 -1.7 -3.6 flagellar assembly protein FliO compare
PS417_13075 -1.7 -1.5 hypothetical protein compare
PS417_25720 -1.7 -5.1 anthranilate synthase component II compare
PS417_19705 -1.7 -1.4 flagellar biosynthesis regulator FlhF compare
PS417_19885 -1.7 -2.3 flagellar basal body rod protein FlgG compare
PS417_05555 -1.6 -2.4 amino acid ABC transporter permease compare
PS417_09470 -1.6 -1.0 hypothetical protein compare
PS417_21575 -1.6 -3.0 chemotaxis protein compare
PS417_17545 -1.6 -2.3 2-oxoisovalerate dehydrogenase compare
PS417_02270 -1.6 -3.4 carbamoyltransferase compare
PS417_23890 -1.6 -4.6 ATPase compare
PS417_05785 -1.6 -3.3 tail protein compare
PS417_04435 -1.6 -6.7 uracil phosphoribosyltransferase compare
PS417_00335 -1.6 -4.9 cytochrome B561 compare
PS417_22795 -1.6 -1.7 exclusion suppressor FxsA compare
PS417_19660 -1.6 -3.9 cobalamin biosynthesis protein CobQ compare
PS417_27135 -1.6 -0.6 glutamine synthetase compare
PS417_18560 -1.6 -4.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_04365 -1.6 -0.9 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_25815 -1.6 -2.3 magnesium transporter ApaG compare
PS417_00590 -1.6 -1.7 5S ribosomal RNA compare
PS417_07470 -1.6 -1.2 hypothetical protein compare
PS417_06200 -1.6 -4.0 protein-PII uridylyltransferase compare
PS417_19795 -1.6 -4.2 flagellar assembly protein FliH compare
PS417_19735 -1.6 -2.4 flagellar biosynthesis protein FliQ compare
PS417_12205 -1.6 -4.8 hypothetical protein compare
PS417_08155 -1.5 -0.8 integration host factor subunit beta compare
PS417_23135 -1.5 -1.4 GTP-binding protein compare
PS417_04220 -1.5 -1.0 4-carboxymuconolactone decarboxylase compare
PS417_08170 -1.5 -5.9 capsular biosynthesis protein compare
PS417_11845 -1.5 -3.2 RpiR family transcriptional regulator compare
PS417_20130 -1.5 -6.7 dehydrogenase compare
PS417_12805 -1.5 -6.2 glycogen branching protein compare
PS417_00845 -1.5 -1.2 transcriptional regulator compare
PS417_05595 -1.5 -3.6 ornithine carbamoyltransferase compare
PS417_26155 -1.5 -1.4 hypothetical protein compare
PS417_01915 -1.5 -0.7 ATP-dependent protease ATP-binding subunit HslU compare
PS417_25835 -1.5 -6.2 hypothetical protein compare
PS417_12200 -1.5 -3.1 microcin ABC transporter permease compare
PS417_22210 -1.5 -1.4 AraC family transcriptional regulator compare
PS417_27305 -1.5 -4.7 5-formyltetrahydrofolate cyclo-ligase compare
PS417_16310 -1.5 -3.4 membrane protein compare
PS417_07565 -1.5 -2.3 hypothetical protein compare
PS417_25225 -1.5 -1.5 MFS transporter compare
PS417_28225 -1.5 -1.0 hypothetical protein compare
PS417_04080 -1.5 -1.8 peptide ABC transporter substrate-binding protein compare


Specific Phenotypes

For 7 genes in this experiment