Experiment set10IT063 for Pseudomonas simiae WCS417
soil sample 6; outgrowth in LB
Group: soilMedia:
Culturing: fluoroDangl_ML3, potted plant
By: Dawn Chiniquy on 4-Apr-19
Specific Phenotypes
For 7 genes in this experiment
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Choline and Betaine Uptake and Betaine Biosynthesis | 1 |
| De Novo Pyrimidine Synthesis | 1 |
| LMPTP YwlE cluster | 1 |
| Protein degradation | 1 |
| Queuosine-Archaeosine Biosynthesis | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Pentose and glucuronate interconversions
- Biosynthesis of steroids
- Pyrimidine metabolism
- Lipopolysaccharide biosynthesis
- Carotenoid biosynthesis - General
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| pyrimidine nucleobases salvage I | 1 | 1 | 1 |
| pyrimidine nucleobases salvage II | 2 | 2 | 1 |
| Arg/N-end rule pathway (eukaryotic) | 14 | 8 | 4 |
| superpathway of pyrimidine nucleobases salvage | 4 | 4 | 1 |
| queuosine biosynthesis I (de novo) | 4 | 4 | 1 |
| queuosine biosynthesis III (queuosine salvage) | 5 | 3 | 1 |
| superpathway of pyrimidine ribonucleosides salvage | 10 | 6 | 1 |