Experiment set10IT063 for Pseudomonas putida KT2440

Compare to:

D-Glucose carbon source 10 mM

200 most important genes:

  gene name fitness t score description  
PP_0293 -6.0 -3.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1079 -5.3 -7.3 Ornithine carbamoyltransferase compare
PP_4680 -4.8 -14.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1986 -4.7 -4.6 3-isopropylmalate dehydratase small subunit compare
PP_0292 -4.7 -5.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0691 -4.6 -5.5 Glutamate 5-kinase compare
PP_4678 -4.3 -15.3 Ketol-acid reductoisomerase compare
PP_5014 -4.1 -5.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_1988 -3.9 -7.3 3-isopropylmalate dehydrogenase compare
PP_0082 -3.8 -7.7 tryptophan synthase alpha chain compare
PP_0422 -3.7 -6.6 Indole-3-glycerol phosphate synthase compare
PP_5128 -3.7 -8.4 Dihydroxy-acid dehydratase compare
PP_0966 -3.7 -9.4 Histidinol dehydrogenase compare
PP_1995 -3.7 -8.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0965 -3.7 -7.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0083 -3.6 -7.5 tryptophan synthase beta chain compare
PP_0421 -3.5 -8.1 Anthranilate phosphoribosyltransferase compare
PP_2378 -3.5 -2.4 Fe/S biogenesis protein NfuA compare
PP_5095 -3.4 -3.0 pyrroline-5-carboxylate reductase compare
PP_0967 -3.3 -8.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4700 -3.3 -2.3 pantothenate synthetase compare
PP_4696 -3.3 -6.6 Nitrogen regulation protein NR(I) compare
PP_3511 -3.2 -6.6 Branched-chain-amino-acid aminotransferase compare
PP_5185 -3.2 -7.1 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5347 -3.2 -11.7 pyruvate carboxylase subunit A compare
PP_3999 -3.2 -9.0 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4999 -3.2 -3.0 dihydroorotase-like protein compare
PP_4724 -3.2 -6.7 Carbamoyl-phosphate synthase small chain compare
PP_5155 -3.1 -4.6 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4890 -3.1 -7.7 ATP phosphoribosyltransferase regulatory subunit compare
PP_4909 -2.9 -7.6 phosphoserine phosphatase compare
PP_5289 -2.9 -5.5 Acetylglutamate kinase compare
PP_2371 -2.9 -7.2 Sulphite reductase hemoprotein, beta subunit compare
PP_2327 -2.9 -6.1 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0339 -2.8 -2.7 Pyruvate dehydrogenase E1 component compare
PP_4122 -2.8 -1.9 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0289 -2.8 -7.8 Imidazoleglycerol-phosphate dehydratase compare
PP_0417 -2.7 -11.9 Anthranilate synthase component 1 compare
PP_0290 -2.7 -7.3 Imidazole glycerol phosphate synthase subunit HisH compare
PP_2655 -2.6 -3.5 conserved protein of unknown function compare
PP_0833 -2.6 -2.5 queuine tRNA-ribosyltransferase compare
PP_4679 -2.6 -5.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5348 -2.6 -6.8 Transcriptional regulator, LysR family compare
PP_4723 -2.6 -9.4 Carbamoyl-phosphate synthase large chain compare
PP_1366 -2.6 -2.6 Transcriptional regulator MvaT, P16 subunit compare
PP_0184 -2.5 -5.0 Argininosuccinate lyase compare
PP_1088 -2.5 -8.3 Argininosuccinate synthase compare
PP_5346 -2.5 -6.6 pyruvate carboxylase subunit B compare
PP_2765 -2.4 -2.6 putative Sulfonate monooxygenase MsuD compare
PP_1985 -2.3 -3.5 3-isopropylmalate dehydratase large subunit compare
PP_0065 -2.3 -3.4 NAD-binding component of TrK potassium transporter compare
PP_5114 -2.3 -2.0 putative adenine methyltransferase compare
PP_0291 -2.3 -3.8 conserved protein of unknown function compare
PP_1025 -2.2 -9.4 2-isopropylmalate synthase compare
PP_2001 -2.2 -7.0 O-succinylhomoserine sulfhydrylase compare
PP_0420 -2.2 -6.5 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5098 -2.1 -6.4 methionine biosynthesis protein MetW compare
PP_1231 -2.1 -5.8 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5015 -2.1 -3.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1022 -2.1 -5.0 glucose 6-phosphate-1-dehydrogenase compare
PP_1328 -2.0 -2.3 Protein MraZ compare
PP_5303 -2.0 -4.1 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1362 -1.9 -3.4 pyruvate kinase II compare
PP_0787 -1.9 -4.1 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5097 -1.9 -8.2 homoserine O-acetyltransferase compare
PP_2429 -1.8 -2.0 putative Membrane protein compare
PP_0274 -1.8 -2.0 putative transcriptional regulator containing HTH domain compare
PP_4642 -1.8 -1.4 Cyclic diguanosine monophosphate-binding protein compare
PP_3417 -1.7 -4.5 D-gluconate transporter compare
PP_2168 -1.7 -5.9 Transaldolase compare
PP_2370 -1.7 -3.4 conserved protein of unknown function compare
PP_5571 -1.7 -1.7 conserved protein of unknown function compare
PP_0366 -1.6 -5.1 dethiobiotin synthetase compare
PP_0888 -1.6 -2.4 Photosynthetic apparatus regulatory protein RegA compare
PP_0276 -1.6 -1.3 Transcriptional regulator, Cro/CI family compare
PP_0963 -1.6 -2.8 putative BolA family protein compare
PP_4964 -1.6 -2.9 D-erythrose 4-phosphate dehydrogenase compare
PP_4482 -1.5 -2.0 Transcriptional regulator, AraC family compare
PP_3409 -1.5 -2.7 putative Cobalamin biosynthesis protein cobE compare
PP_5508 -1.5 -1.4 conserved protein of unknown function compare
PP_4098 -1.5 -2.2 UvrABC system protein C compare
PP_0127 -1.4 -5.2 Thiol:disulfide interchange protein compare
PP_1428 -1.4 -0.9 Sigma factor AlgU negative regulatory protein compare
PP_0362 -1.4 -7.3 Biotin synthase compare
PP_2504 -1.3 -3.3 putative tautomerase K2 compare
PP_4984 -1.3 -6.9 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_0513 -1.3 -1.6 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_4910 -1.3 -1.1 conserved protein of unknown function compare
PP_1912 -1.2 -3.4 Phosphate acyltransferase compare
PP_1099 -1.2 -3.0 Cold shock protein CapB compare
PP_3522 -1.2 -3.5 conserved protein of unknown function compare
PP_0364 -1.2 -5.6 pimeloyl-[acp] methyl ester esterase compare
PP_1122 -1.2 -1.9 OmpA family protein compare
PP_5028 -1.2 -2.6 proline iminopeptidase compare
PP_5533 -1.1 -1.3 conserved protein of unknown function compare
PP_0363 -1.1 -6.4 8-amino-7-oxononanoate synthase compare
PP_2328 -1.1 -3.5 Phosphoadenosine phosphosulfate reductase compare
PP_0153 -1.1 -2.0 hypothetical protein compare
PP_0393 -1.1 -1.6 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1629 -1.1 -3.6 Protein RecA compare
PP_2681 -1.1 -1.8 coenzyme PQQ synthesis protein D compare
PP_2416 -1.1 -2.2 putative Iron ABC transporter, ATP-binding protein compare
PP_1128 -1.1 -2.3 OmpA family protein compare
PP_5317 -1.1 -2.8 Probable chorismate pyruvate-lyase compare
PP_1994 -1.0 -1.1 tRNA pseudouridine (38-40)synthase compare
PP_0801 -1.0 -1.1 conserved exported protein of unknown function compare
PP_5008 -1.0 -0.8 Poly granule-associated protein compare
PP_4916 -1.0 -2.4 putative esterase compare
PP_0377 -1.0 -1.7 coenzyme PQQ synthesis protein D compare
PP_2336 -1.0 -2.8 aconitate hydratase 1 compare
PP_1233 -1.0 -2.7 sulfurtransferase compare
PP_0834 -1.0 -1.6 Sec translocation complex subunit YajC compare
PP_1654 -1.0 -1.9 cysteine synthase B compare
PP_4180 -1.0 -2.1 conserved protein of unknown function compare
PP_4829 -1.0 -1.6 putative precorrin-3B synthase compare
PP_4993 -1.0 -2.3 Glutathione synthetase compare
PP_3245 -0.9 -0.9 conserved protein of unknown function compare
PP_5486 -0.9 -1.9 conserved protein of unknown function compare
PP_0957 -0.9 -1.6 D-arabinose 5-phosphate isomerase compare
PP_1664 -0.9 -2.0 phosphoribosylglycinamide formyltransferase 1 compare
PP_3471 -0.9 -3.1 conserved protein of unknown function compare
PP_4952 -0.9 -0.9 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_4471 -0.9 -2.5 Magnesium transporter compare
PP_0365 -0.9 -4.5 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_4874 -0.9 -0.8 50S ribosomal protein L9 compare
PP_5104 -0.8 -3.6 thiazole synthase compare
PP_5639 -0.8 -4.1 conserved exported protein of unknown function compare
PP_5227 -0.8 -3.2 diaminopimelate decarboxylase compare
PP_3312 -0.8 -0.9 putative Heat shock protein compare
PP_t29 -0.8 -1.1 tRNA-Ala compare
PP_0556 -0.8 -2.5 Acetoin catabolism protein compare
PP_3307 -0.8 -1.4 conserved protein of unknown function compare
PP_2794 -0.8 -1.1 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_3235 -0.8 -3.4 conserved protein of unknown function compare
PP_4355 -0.8 -1.8 flagellar export apparatus subunit compare
PP_4895 -0.8 -1.8 tRNA dimethylallyltransferase compare
PP_5093 -0.8 -0.9 twitching motility protein compare
PP_1008 -0.8 -2.4 RNA polymerase subunit sigma-24 compare
PP_1676 -0.8 -2.1 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_4875 -0.8 -2.2 conserved membrane protein of unknown function compare
PP_5705 -0.8 -1.5 protein of unknown function compare
PP_4989 -0.8 -2.2 Protein PilJ compare
PP_2575 -0.8 -1.6 conserved exported protein of unknown function compare
PP_1513 -0.8 -1.5 Ribosomal RNA small subunit methyltransferase J compare
PP_1734 -0.8 -1.8 Probable septum site-determining protein MinC compare
PP_5483 -0.7 -0.8 conserved protein of unknown function compare
PP_0381 -0.7 -2.8 Coenzyme PQQ synthesis protein F compare
PP_4340 -0.7 -3.0 response regulator for chemotactic signal transduction compare
PP_3248 -0.7 -2.1 Dyp-type peroxidase family protein compare
PP_2677 -0.7 -1.7 conserved exported protein of unknown function compare
PP_3908 -0.7 -2.0 conserved protein of unknown function compare
PP_0122 -0.7 -1.2 conserved exported protein of unknown function compare
PP_4782 -0.7 -2.1 Phosphomethylpyrimidine kinase compare
PP_4133 -0.7 -0.9 Transcriptional regulator-related protein compare
PP_2929 -0.7 -3.5 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_2384 -0.7 -2.3 conserved membrane protein of unknown function compare
PP_0002 -0.7 -2.9 probable chromosome partition protein compare
PP_5350 -0.7 -1.9 Transcriptional regulator, RpiR family compare
PP_2152 -0.7 -1.6 glycerophosphoryl diester phosphodiesterase compare
PP_2222 -0.7 -1.8 conserved protein of unknown function compare
PP_1678 -0.7 -2.0 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_1324 -0.7 -3.2 putative endonuclease distantly related to archaeal Holliday junction resolvase compare
PP_4470 -0.7 -1.2 putative transcriptional regulator (Arc domain-containing) compare
PP_0719 -0.7 -0.8 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0250 -0.7 -1.2 heat shock protein Hsp15 involved in ribosome recycling compare
PP_5674 -0.7 -1.5 conserved protein of unknown function compare
PP_0781 -0.7 -1.8 conserved protein of unknown function compare
PP_1055 -0.7 -0.9 Type II secretion pathway protein GspN compare
PP_1045 -0.7 -1.0 Type II secretion pathway protein XcpP compare
PP_4480 -0.7 -3.7 arginine N-succinyltransferase, subunit alpha compare
PP_3117 -0.7 -1.5 putative protein involved in error-prone processing of DNA lesions compare
PP_1237 -0.7 -1.0 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1426 -0.7 -4.1 L-aspartate oxidase compare
PP_0773 -0.7 -2.7 OmpA/MotB domain-containing protein compare
PP_1441 -0.7 -2.2 tRNA (cmo5U34)-methyltransferase compare
PP_3496 -0.6 -2.2 Endoribonuclease L-PSP compare
PP_2337 -0.6 -1.3 aconitate isomerase compare
PP_3185 -0.6 -1.8 Pet18 protein compare
PP_3020 -0.6 -1.8 putative Serine/threonine protein phosphatase compare
PP_0380 -0.6 -1.9 Coenzyme PQQ synthesis protein A compare
PP_3461 -0.6 -2.7 quinohemoprotein amine dehydrogenase modification protein compare
PP_0232 -0.6 -0.8 ATP-binding taurine transporter subunit compare
PP_4121 -0.6 -1.9 NADH-quinone oxidoreductase subunit C/D compare
PP_0735 -0.6 -0.8 molybdopterin-synthase adenylyltransferase compare
PP_4828 -0.6 -0.8 Precorrin-8X methylmutase compare
PP_2129 -0.6 -2.0 conserved protein of unknown function compare
PP_4263 -0.6 -2.0 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_4546 -0.6 -1.7 ATP-dependent helicase HrpA compare
PP_1672 -0.6 -1.7 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_1656 -0.6 -3.7 ATP:GTP 3'-pyrophosphotransferase compare
PP_2196 -0.6 -1.5 agmatinase compare
PP_4824 -0.6 -2.5 Sensor histidine kinase/response regulator compare
PP_5274 -0.6 -1.5 conserved protein of unknown function compare
PP_4504 -0.6 -1.0 conserved exported protein of unknown function compare
PP_2750 -0.6 -2.1 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_2835 -0.6 -1.4 putative oxidoreductase compare
PP_5017 -0.6 -0.8 Sec-independent protein translocase protein TatB compare
PP_0621 -0.6 -1.7 conserved protein of unknown function compare
PP_5331 -0.6 -1.3 Long-chain acyl-CoA thioester hydrolase compare
PP_2729 -0.6 -1.8 conserved protein of unknown function compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source D-Glucose in Pseudomonas putida KT2440

For carbon source D-Glucose across organisms