Experiment set10IT062 for Pseudomonas simiae WCS417

Compare to:

soil sample 5; outgrowth in LB

200 most important genes:

  gene name fitness t score description  
PS417_26985 -6.3 -5.6 phosphoenolpyruvate-protein phosphotransferase compare
PS417_27865 -6.1 -2.7 LysR family transcriptional regulator compare
PS417_01575 -5.6 -3.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_02895 -5.6 -2.2 precorrin-6Y C5,15-methyltransferase compare
PS417_27040 -5.5 -2.1 3-phosphoglycerate dehydrogenase compare
PS417_21430 -5.3 -2.7 3-oxoacyl-ACP synthase compare
PS417_14065 -5.1 -3.9 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_00370 -4.9 -1.2 hypothetical protein compare
PS417_16990 -4.9 -5.6 acyl-CoA dehydrogenase compare
PS417_13510 -4.9 -1.1 polyketide cyclase compare
PS417_26240 -4.9 -2.2 N-methylproline demethylase compare
PS417_13140 -4.7 -1.9 oxidoreductase compare
PS417_04380 -4.7 -1.9 ABC transporter permease compare
PS417_05010 -4.6 -1.8 IclR family transcriptional regulator compare
PS417_02975 -4.6 -3.5 3-dehydroquinate dehydratase compare
PS417_18585 -4.6 -5.2 3-isopropylmalate dehydrogenase compare
PS417_00385 -4.5 -1.1 Fur family transcriptional regulator compare
PS417_04410 -4.5 -2.1 hypothetical protein compare
PS417_24835 -4.5 -3.4 hypothetical protein compare
PS417_19425 -4.4 -1.0 allantoicase compare
PS417_25790 -4.4 -4.6 aminoglycoside phosphotransferase compare
PS417_08135 -4.2 -5.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_07640 -4.2 -2.6 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_27245 -4.2 -2.9 aminotransferase DegT compare
PS417_12535 -4.2 -2.3 nitrilase compare
PS417_01285 -4.2 -1.3 haloacid dehalogenase compare
PS417_22445 -4.2 -2.2 ATP-dependent DNA helicase RuvB compare
PS417_17215 -4.2 -3.5 peptidylprolyl isomerase compare
PS417_13790 -4.1 -3.9 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_05100 -4.1 -2.1 RNA polymerase sigma factor compare
PS417_06600 -4.0 -0.9 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_02560 -4.0 -1.8 23S rRNA methyltransferase compare
PS417_22570 -4.0 -0.9 H-NS histone compare
PS417_24745 -3.8 -1.9 gamma-glutamyl phosphate reductase compare
PS417_23995 -3.8 -0.9 preprotein translocase subunit SecG compare
PS417_18390 -3.8 -7.9 LacI family transcriptional regulator compare
PS417_13795 -3.7 -6.8 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_20985 -3.7 -2.0 porin compare
PS417_22520 -3.6 -1.6 histidine kinase compare
PS417_26850 -3.6 -0.8 twin-arginine translocation pathway signal protein compare
PS417_12200 -3.6 -5.0 microcin ABC transporter permease compare
PS417_16005 -3.6 -2.6 ATPase compare
PS417_01620 -3.5 -2.8 preprotein translocase subunit SecB compare
PS417_17795 -3.5 -1.9 ABC transporter permease compare
PS417_06375 -3.5 -0.8 deoxycytidine triphosphate deaminase compare
PS417_27135 -3.5 -0.8 glutamine synthetase compare
PS417_25710 -3.4 -1.1 indole-3-glycerol-phosphate synthase compare
PS417_22780 -3.4 -2.5 XRE family transcriptional regulator compare
PS417_01920 -3.3 -1.0 ATP-dependent protease subunit HslV compare
PS417_06780 -3.3 -3.5 TetR family transcriptional regulator compare
PS417_02415 -3.3 -4.1 phosphoserine phosphatase compare
PS417_12855 -3.3 -3.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_01580 -3.2 -1.0 imidazole glycerol phosphate synthase compare
PS417_27795 -3.2 -0.7 orotate phosphoribosyltransferase compare
PS417_26990 -3.2 -1.1 RNA pyrophosphohydrolase compare
PS417_04415 -3.2 -4.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_06530 -3.2 -2.0 membrane protein compare
PS417_08125 -3.2 -0.7 prephenate dehydratase compare
PS417_19600 -3.2 -1.0 exonuclease compare
PS417_23810 -3.2 -9.2 acetolactate synthase 3 catalytic subunit compare
PS417_04375 -3.1 -2.0 ABC transporter ATP-binding protein compare
PS417_23385 -3.1 -6.2 cytochrome o ubiquinol oxidase subunit I compare
PS417_17565 -3.1 -2.4 branched-chain amino acid aminotransferase compare
PS417_24800 -3.1 -3.8 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_24460 -3.0 -2.0 hypothetical protein compare
PS417_19415 -3.0 -2.3 allantoinase compare
PS417_27640 -3.0 -1.2 TetR family transcriptional regulator compare
PS417_01565 -3.0 -2.5 imidazole glycerol phosphate synthase compare
PS417_00925 -3.0 -1.7 hypothetical protein compare
PS417_23375 -2.9 -1.4 cytochrome C oxidase compare
PS417_04595 -2.9 -1.9 cell division protein MraZ compare
PS417_13820 -2.9 -4.2 UDP-glucose 6-dehydrogenase compare
PS417_05160 -2.9 -1.0 DNA polymerase III subunit chi compare
PS417_15875 -2.9 -1.9 LuxR family transcriptional regulator compare
PS417_19835 -2.9 -1.2 flagellar biosynthesis protein FliS compare
PS417_20310 -2.9 -2.7 hypothetical protein compare
PS417_23770 -2.9 -1.4 exodeoxyribonuclease V subunit alpha compare
PS417_01605 -2.8 -1.3 phosphoglycerate mutase compare
PS417_19885 -2.8 -2.0 flagellar basal body rod protein FlgG compare
PS417_21070 -2.8 -2.5 aconitate hydratase compare
PS417_26740 -2.8 -5.8 homoserine acetyltransferase compare
PS417_14915 -2.8 -1.9 host specificity protein compare
PS417_06845 -2.8 -1.3 lipoprotein compare
PS417_23545 -2.8 -1.6 gamma-glutamyl kinase compare
PS417_07560 -2.7 -1.1 universal stress protein UspA compare
PS417_23250 -2.7 -5.9 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_21850 -2.7 -1.1 LysR family transcriptional regulator compare
PS417_26235 -2.7 -4.0 (Fe-S)-binding protein compare
PS417_22565 -2.7 -0.6 formyltetrahydrofolate deformylase compare
PS417_13805 -2.7 -6.8 4-amino-4-deoxy-L-arabinose transferase compare
PS417_14940 -2.7 -1.4 LysR family transcriptional regulator compare
PS417_01710 -2.7 -2.4 histidine utilization repressor compare
PS417_07710 -2.7 -6.1 membrane protein compare
PS417_05905 -2.6 -1.7 hypothetical protein compare
PS417_08025 -2.6 -1.2 acetylornithine aminotransferase compare
PS417_01855 -2.6 -2.2 phosphoribosyl-AMP cyclohydrolase compare
PS417_04385 -2.6 -3.6 organic solvent ABC transporter substrate-binding protein compare
PS417_04270 -2.6 -4.1 ribonuclease G compare
PS417_04340 -2.6 -4.3 ribosome hibernation promoting factor HPF compare
PS417_27300 -2.5 -0.8 cell division protein ZapA compare
PS417_21830 -2.5 -2.6 TetR family transcriptional regulator compare
PS417_05815 -2.5 -3.7 recombinase RecA compare
PS417_04420 -2.5 -5.5 histidinol dehydrogenase compare
PS417_01850 -2.4 -4.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_01560 -2.4 -2.0 imidazoleglycerol-phosphate dehydratase compare
PS417_00300 -2.4 -6.2 cytochrome B559 subunit alpha compare
PS417_07170 -2.4 -4.3 hypothetical protein compare
PS417_04800 -2.4 -1.8 alginate O-acetyltransferase compare
PS417_23370 -2.4 -3.1 protoheme IX farnesyltransferase compare
PS417_22690 -2.4 -3.2 phosphogluconate dehydratase compare
PS417_26730 -2.4 -0.8 pyrroline-5-carboxylate reductase compare
PS417_25650 -2.4 -2.5 anhydro-N-acetylmuramic acid kinase compare
PS417_08410 -2.4 -2.1 hypothetical protein compare
PS417_25915 -2.4 -1.9 carbon-nitrogen hydrolase compare
PS417_18020 -2.4 -1.5 hypothetical protein compare
PS417_18595 -2.4 -2.8 3-isopropylmalate dehydratase compare
PS417_17095 -2.4 -3.4 spore coat protein compare
PS417_09235 -2.4 -0.8 molecular chaperone compare
PS417_17070 -2.4 -1.7 RNA polymerase subunit sigma-24 compare
PS417_16045 -2.4 -1.9 acyl-CoA dehydrogenase compare
PS417_13800 -2.3 -1.7 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_15915 -2.3 -1.1 hypothetical protein compare
PS417_04875 -2.3 -1.0 molybdenum cofactor biosynthesis protein MoaE compare
PS417_26050 -2.3 -4.1 response regulator compare
PS417_23915 -2.3 -3.2 pantoate--beta-alanine ligase compare
PS417_03310 -2.3 -3.1 carbonate dehydratase compare
PS417_08685 -2.3 -0.8 flagellar hook-length control protein FliK compare
PS417_01115 -2.3 -1.4 serine acetyltransferase compare
PS417_24500 -2.3 -2.7 DEAD/DEAH box helicase compare
PS417_24155 -2.2 -1.5 ATP-binding protein compare
PS417_23890 -2.2 -3.3 ATPase compare
PS417_25645 -2.2 -3.2 peptidase M23 compare
PS417_06680 -2.2 -5.9 nuclease PIN compare
PS417_26645 -2.2 -2.1 chemotaxis protein compare
PS417_12355 -2.2 -1.8 magnesium chelatase compare
PS417_01915 -2.2 -0.7 ATP-dependent protease ATP-binding subunit HslU compare
PS417_22775 -2.2 -5.5 histidine kinase compare
PS417_17780 -2.2 -1.0 Ais protein compare
PS417_15135 -2.2 -1.2 hypothetical protein compare
PS417_02000 -2.2 -6.9 glutamate synthase compare
PS417_19860 -2.1 -7.9 flagellar hook protein FlgL compare
PS417_23390 -2.1 -3.1 ubiquinol oxidase subunit II compare
PS417_12120 -2.1 -3.1 IclR family transcriptional regulator compare
PS417_11400 -2.1 -1.0 phosphoglycerate mutase compare
PS417_18600 -2.1 -2.0 isopropylmalate isomerase compare
PS417_23210 -2.1 -1.4 serine acetyltransferase compare
PS417_20130 -2.1 -6.3 dehydrogenase compare
PS417_08620 -2.1 -0.8 hypothetical protein compare
PS417_24710 -2.1 -3.3 lipoprotein compare
PS417_23380 -2.0 -1.9 cytochrome o ubiquinol oxidase subunit III compare
PS417_02980 -2.0 -0.9 chemotaxis protein compare
PS417_00325 -2.0 -4.6 hypothetical protein compare
PS417_12195 -2.0 -3.7 ABC transporter permease compare
PS417_26890 -2.0 -3.7 dihydroxy-acid dehydratase compare
PS417_12805 -2.0 -6.2 glycogen branching protein compare
PS417_03970 -2.0 -1.1 1-phosphofructokinase compare
PS417_23800 -2.0 -5.1 ketol-acid reductoisomerase compare
PS417_26745 -2.0 -2.7 methionine biosynthesis protein MetW compare
PS417_04080 -1.9 -1.9 peptide ABC transporter substrate-binding protein compare
PS417_25390 -1.9 -4.3 MFS transporter compare
PS417_16720 -1.9 -0.9 membrane protein compare
PS417_12205 -1.9 -3.9 hypothetical protein compare
PS417_27535 -1.9 -4.5 chemotaxis protein CheY compare
PS417_27035 -1.9 -3.8 FAD-linked oxidase compare
PS417_28230 -1.9 -2.0 transcriptional regulator compare
PS417_23805 -1.9 -3.5 acetolactate synthase 3 regulatory subunit compare
PS417_27595 -1.9 -1.8 recombinase XerC compare
PS417_19955 -1.9 -1.4 hypothetical protein compare
PS417_27870 -1.9 -2.5 ATP-dependent DNA helicase RecG compare
PS417_00085 -1.9 -1.2 16S rRNA methyltransferase compare
PS417_12660 -1.9 -1.4 hypothetical protein compare
PS417_10985 -1.9 -0.9 NADH:flavin oxidoreductase compare
PS417_14605 -1.9 -2.3 adenylate kinase compare
PS417_16515 -1.9 -1.4 Clp protease ClpS compare
PS417_12795 -1.8 -5.0 alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PS417_00045 -1.8 -1.5 glycerol acyltransferase compare
PS417_14920 -1.8 -2.5 CoA-transferase compare
PS417_25725 -1.8 -6.2 anthranilate synthase component I compare
PS417_24705 -1.8 -1.5 D-alanyl-D-alanine carboxypeptidase compare
PS417_21630 -1.8 -1.8 magnesium transporter compare
PS417_22130 -1.8 -2.9 glucose/xylose ABC transporter, ATPase component (from data) compare
PS417_04275 -1.8 -8.4 hypothetical protein compare
PS417_02005 -1.8 -4.1 glutamate synthase compare
PS417_01795 -1.8 -6.4 glucosyltransferase MdoH compare
PS417_00180 -1.8 -1.6 tryptophan synthase subunit alpha compare
PS417_27705 -1.8 -1.0 amino acid dehydrogenase compare
PS417_15400 -1.8 -1.2 hypothetical protein compare
PS417_04390 -1.8 -2.9 toluene tolerance protein compare
PS417_16500 -1.8 -4.2 arginyl-tRNA-protein transferase compare
PS417_04865 -1.8 -2.4 molybdenum cofactor biosynthesis protein MoaC compare
PS417_22815 -1.8 -4.0 permease compare
PS417_26010 -1.8 -3.7 amidophosphoribosyltransferase compare
PS417_26230 -1.7 -2.0 electron transfer flavoprotein subunit alpha compare
PS417_26225 -1.7 -1.7 electron transfer flavoprotein subunit beta compare
PS417_00185 -1.7 -1.9 tryptophan synthase subunit beta compare
PS417_18560 -1.7 -4.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_27305 -1.7 -4.9 5-formyltetrahydrofolate cyclo-ligase compare
PS417_19850 -1.7 -5.1 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_16555 -1.7 -1.4 cupin compare
PS417_05560 -1.7 -1.4 ABC transporter compare


Specific Phenotypes

For 12 genes in this experiment