Experiment set10IT062 for Pseudomonas simiae WCS417

soil sample 5; outgrowth in LB

Group: soil
Media:
Culturing: fluoroDangl_ML3, potted plant
By: Dawn Chiniquy on 4-Apr-19

Specific Phenotypes

For 12 genes in this experiment

SEED Subsystems

Subsystem	#Specific
Terminal cytochrome C oxidases	2
Choline and Betaine Uptake and Betaine Biosynthesis	1
De Novo Pyrimidine Synthesis	1
LMPTP YwlE cluster	1
Maltose and Maltodextrin Utilization	1
Queuosine-Archaeosine Biosynthesis	1
Thiamin biosynthesis	1
Trehalose Biosynthesis	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Pentose and glucuronate interconversions
• Biosynthesis of steroids
• Oxidative phosphorylation
• Pyrimidine metabolism
• Starch and sucrose metabolism
• Lipopolysaccharide biosynthesis
• Carotenoid biosynthesis - General

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
pyrimidine nucleobases salvage I	1	1	1
pyrimidine nucleobases salvage II	2	2	1
arsenite to oxygen electron transfer	2	1	1
arsenite to oxygen electron transfer (via azurin)	3	1	1
queuosine biosynthesis I (de novo)	4	4	1
superpathway of pyrimidine nucleobases salvage	4	4	1
aerobic respiration II (cytochrome c) (yeast)	4	3	1
aerobic respiration I (cytochrome c)	4	3	1
queuosine biosynthesis III (queuosine salvage)	5	3	1
thiazole component of thiamine diphosphate biosynthesis I	6	4	1
Fe(II) oxidation	6	3	1
thiazole component of thiamine diphosphate biosynthesis II	7	5	1
superpathway of thiamine diphosphate biosynthesis I	10	8	1
superpathway of pyrimidine ribonucleosides salvage	10	6	1
superpathway of thiamine diphosphate biosynthesis II	11	9	1