Experiment set10IT062 for Pseudomonas putida KT2440

Compare to:

Myristic acid carbon source

200 most important genes:

  gene name fitness t score description  
PP_5015 -6.0 -3.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_3505 -5.9 -2.4 conserved protein of unknown function compare
PP_0290 -5.8 -4.0 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0293 -5.8 -2.3 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5717 -5.8 -2.6 conserved protein of unknown function compare
PP_2137 -5.7 -3.0 beta-ketoadipyl CoA thiolase, beta component compare
PP_0356 -5.6 -8.6 malate synthase G compare
PP_0421 -5.5 -10.0 Anthranilate phosphoribosyltransferase compare
PP_1062 -5.5 -2.5 MutT/nudix family protein compare
PP_5303 -5.5 -5.3 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0691 -5.4 -3.7 Glutamate 5-kinase compare
PP_0082 -5.4 -3.7 tryptophan synthase alpha chain compare
PP_4116 -5.4 -11.4 isocitrate lyase compare
PP_5014 -5.3 -3.5 Phosphoribosyl-AMP cyclohydrolase compare
PP_4679 -5.3 -7.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5582 -5.2 -1.2 conserved protein of unknown function compare
PP_5571 -5.2 -1.2 conserved protein of unknown function compare
PP_5267 -5.1 -2.4 putative cytochrome c5 compare
PP_2370 -4.9 -2.7 conserved protein of unknown function compare
PP_4642 -4.9 -1.1 Cyclic diguanosine monophosphate-binding protein compare
PP_0422 -4.9 -5.6 Indole-3-glycerol phosphate synthase compare
PP_0289 -4.8 -8.7 Imidazoleglycerol-phosphate dehydratase compare
PP_1088 -4.8 -10.3 Argininosuccinate synthase compare
PP_0417 -4.8 -18.2 Anthranilate synthase component 1 compare
PP_1995 -4.8 -9.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0184 -4.7 -3.3 Argininosuccinate lyase compare
PP_0083 -4.7 -5.6 tryptophan synthase beta chain compare
PP_1079 -4.7 -4.9 Ornithine carbamoyltransferase compare
PP_2136 -4.6 -4.5 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_3098 -4.5 -1.0 conserved protein of unknown function compare
PP_1988 -4.5 -7.2 3-isopropylmalate dehydrogenase compare
PP_5095 -4.5 -2.0 pyrroline-5-carboxylate reductase compare
PP_3903 -4.4 -2.0 conserved protein of unknown function compare
PP_5289 -4.3 -4.5 Acetylglutamate kinase compare
PP_0368 -4.3 -11.0 putative Acyl-CoA dehydrogenase compare
PP_5007 -4.3 -2.2 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_4678 -4.3 -11.4 Ketol-acid reductoisomerase compare
PP_4680 -4.2 -11.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5575 -4.2 -1.4 conserved protein of unknown function compare
PP_4549 -4.2 -11.4 long-chain-fatty-acid/CoA ligase conserved
PP_0966 -4.2 -10.0 Histidinol dehydrogenase compare
PP_3999 -4.2 -4.0 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4724 -4.1 -6.5 Carbamoyl-phosphate synthase small chain compare
PP_3105 -4.1 -2.0 conserved membrane protein of unknown function compare
PP_0735 -4.1 -1.3 molybdopterin-synthase adenylyltransferase compare
PP_0965 -4.1 -7.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4999 -4.0 -2.1 dihydroorotase-like protein compare
PP_t29 -4.0 -1.8 tRNA-Ala compare
PP_5659 -4.0 -3.5 protein of unknown function compare
PP_5610 -3.9 -1.3 protein of unknown function compare
PP_5155 -3.9 -4.2 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0291 -3.9 -3.8 conserved protein of unknown function compare
PP_4098 -3.8 -1.9 UvrABC system protein C compare
PP_5097 -3.8 -10.4 homoserine O-acetyltransferase compare
PP_0420 -3.8 -7.5 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_2371 -3.7 -5.2 Sulphite reductase hemoprotein, beta subunit compare
PP_0967 -3.7 -6.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5085 -3.7 -8.8 malic enzyme B compare
PP_1985 -3.6 -3.7 3-isopropylmalate dehydratase large subunit compare
PP_5098 -3.6 -6.3 methionine biosynthesis protein MetW compare
PP_2327 -3.6 -6.2 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1293 -3.6 -1.1 molybdopterin synthase small subunit compare
PP_1826 -3.6 -2.2 Hydrolase, isochorismatase family compare
PP_2720 -3.5 -1.1 conserved protein of unknown function compare
PP_2388 -3.5 -3.1 Transporter, LysE family compare
PP_5185 -3.5 -4.8 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4723 -3.5 -9.3 Carbamoyl-phosphate synthase large chain compare
PP_4909 -3.5 -6.0 phosphoserine phosphatase compare
PP_5128 -3.4 -5.2 Dihydroxy-acid dehydratase compare
PP_5348 -3.4 -7.1 Transcriptional regulator, LysR family compare
PP_5346 -3.4 -5.9 pyruvate carboxylase subunit B compare
PP_2306 -3.4 -1.4 conserved exported protein of unknown function compare
PP_5748 -3.3 -1.8 cytochrome c heme lyase subunit compare
PP_3946 -3.3 -1.1 HTH-type transcriptional repressor NicR compare
PP_0888 -3.2 -1.8 Photosynthetic apparatus regulatory protein RegA compare
PP_1025 -3.2 -8.0 2-isopropylmalate synthase compare
PP_5347 -3.1 -7.4 pyruvate carboxylase subunit A compare
PP_t12 -3.1 -1.0 tRNA-Thr compare
PP_4700 -3.1 -2.1 pantothenate synthetase compare
PP_4943 -3.1 -1.5 putative Glycosyl transferase compare
PP_4890 -3.0 -3.3 ATP phosphoribosyltransferase regulatory subunit compare
PP_5628 -2.9 -2.8 conserved protein of unknown function compare
PP_4561 -2.9 -0.9 stress response protein compare
PP_1097 -2.8 -0.9 Methionine--tRNA ligase compare
PP_1237 -2.8 -1.0 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1654 -2.7 -3.0 cysteine synthase B compare
PP_1986 -2.7 -2.4 3-isopropylmalate dehydratase small subunit compare
PP_1589 -2.7 -6.7 uridylyltransferase compare
PP_1008 -2.7 -1.6 RNA polymerase subunit sigma-24 compare
PP_4120 -2.6 -1.8 NADH-quinone oxidoreductase subunit B compare
PP_1231 -2.6 -4.3 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0852 -2.6 -2.9 Transcriptional regulator, Cro/CI family compare
PP_2001 -2.5 -4.3 O-succinylhomoserine sulfhydrylase compare
PP_0292 -2.5 -2.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5202 -2.5 -1.7 putative cell division protein compare
PP_5674 -2.5 -2.1 conserved protein of unknown function compare
PP_1328 -2.5 -1.8 Protein MraZ compare
PP_3511 -2.5 -4.1 Branched-chain-amino-acid aminotransferase compare
PP_2302 -2.4 -5.1 DNA-binding, ATP-dependent protease compare
PP_1677 -2.4 -2.9 Adenosyl-cobyric acid synthase compare
PP_4273 -2.4 -1.1 Transcriptional regulator, MerR family compare
PP_4122 -2.4 -1.2 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1664 -2.4 -2.9 phosphoribosylglycinamide formyltransferase 1 compare
PP_1322 -2.4 -0.9 putative Lipoprotein compare
PP_3766 -2.3 -2.0 Lactoylglutathione lyase compare
PP_4419 -2.3 -2.1 transposase compare
PP_3409 -2.3 -1.6 putative Cobalamin biosynthesis protein cobE compare
PP_2336 -2.3 -2.7 aconitate hydratase 1 compare
PP_2462 -2.2 -1.9 conserved protein of unknown function compare
PP_0627 -2.2 -2.0 conserved protein of unknown function compare
PP_1679 -2.2 -1.9 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_4482 -2.2 -2.2 Transcriptional regulator, AraC family compare
PP_4356 -2.2 -1.4 Flagellar protein FliO compare
PP_3810 -2.1 -1.1 conserved protein of unknown function compare
PP_0393 -2.1 -1.4 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_3637 -2.1 -0.9 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_4874 -2.1 -0.9 50S ribosomal protein L9 compare
PP_1303 -2.1 -3.7 Sulfate adenylyltransferase subunit 2 compare
PP_2214 -2.1 -2.8 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_3506 -2.1 -1.8 Magnesium chelatase, subunit ChII compare
PP_4124 -2.0 -4.4 NADH-quinone oxidoreductase subunit G compare
PP_3102 -2.0 -2.4 conserved protein of unknown function compare
PP_3522 -2.0 -1.6 conserved protein of unknown function compare
PP_3232 -2.0 -1.8 Acetyltransferase, GNAT family compare
PP_5529 -2.0 -2.7 putative epimerase compare
PP_3487 -2.0 -1.2 conserved exported protein of unknown function compare
PP_2793 -2.0 -1.7 Acyl-CoA dehydrogenase family protein compare
PP_2107 -1.9 -1.3 conserved protein of unknown function compare
PP_2903 -1.9 -1.0 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_4258 -1.9 -2.0 cytochrome c oxidase subunit, cbb3-type compare
PP_0787 -1.9 -1.6 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_3729 -1.8 -2.7 Periplasmic amino acid-binding protein-related protein compare
PP_1074 -1.8 -2.3 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_4699 -1.8 -2.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_5008 -1.8 -1.1 Poly granule-associated protein compare
PP_3384 -1.8 -1.9 gluconate 2-dehydrogenase gamma subunit compare
PP_2168 -1.8 -4.4 Transaldolase compare
PP_4253 -1.8 -1.7 cytochrome c oxidase subunit, cbb3-type compare
PP_5519 -1.8 -1.3 conserved protein of unknown function of phage origin compare
PP_4808 -1.7 -1.9 23S rRNA m3psi1915 methyltransferase compare
PP_2291 -1.7 -1.4 conserved protein of unknown function compare
PP_1233 -1.7 -1.9 sulfurtransferase compare
PP_4696 -1.7 -2.5 Nitrogen regulation protein NR(I) compare
PP_4396 -1.7 -1.5 conserved protein of unknown function compare
PP_0352 -1.7 -1.6 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_2356 -1.7 -4.6 putative Phytochrome family protein compare
PP_5217 -1.6 -7.7 Polyphosphate kinase compare
PP_3037 -1.6 -1.9 C4-type zinc finger protein, DksA/TraR family compare
PP_5227 -1.6 -5.2 diaminopimelate decarboxylase compare
PP_2025 -1.6 -1.9 Exonuclease SbcD compare
PP_0833 -1.6 -1.7 queuine tRNA-ribosyltransferase compare
PP_1673 -1.6 -2.2 cobyrinate a,c-diamide synthase compare
PP_1912 -1.6 -2.7 Phosphate acyltransferase compare
PP_0197 -1.6 -2.2 conserved protein of unknown function compare
PP_4827 -1.6 -4.1 Precorrin-2 C(20)-methyltransferase compare
PP_0064 -1.5 -2.5 conserved protein of unknown function compare
PP_1689 -1.5 -5.2 putative Long-chain fatty acid transporter compare
PP_5621 -1.5 -1.4 protein of unknown function compare
PP_4126 -1.5 -0.8 NADH-quinone oxidoreductase subunit I compare
PP_5604 -1.5 -0.9 putative subtilisin-like serine protease compare
PP_3280 -1.5 -2.0 3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase compare
PP_5038 -1.5 -2.1 conserved lipoprotein of unknown function compare
PP_0370 -1.5 -5.9 Acyl-CoA dehydrogenase family protein compare
PP_2459 -1.5 -1.5 ribose pyranase compare
PP_5453 -1.5 -1.4 conserved protein of unknown function compare
PP_2429 -1.5 -1.1 putative Membrane protein compare
PP_0719 -1.5 -0.8 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_2509 -1.5 -1.7 conserved protein of unknown function compare
PP_0566 -1.5 -0.7 translation-related factor compare
PP_1994 -1.4 -1.0 tRNA pseudouridine (38-40)synthase compare
PP_1675 -1.4 -3.8 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_1439 -1.4 -0.9 conserved exported protein of unknown function compare
PP_2122 -1.4 -1.4 molybdenum cofactor biosynthesis protein B compare
PP_0978 -1.4 -1.7 conserved protein of unknown function compare
PP_1672 -1.4 -2.8 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_3926 -1.4 -1.1 short-chain dehydrogenase compare
PP_3603 -1.4 -3.0 Transcriptional regulator, GntR family compare
PP_2232 -1.4 -1.9 XRE family transcriptional regulator compare
PP_2899 -1.4 -0.9 conserved exported protein of unknown function compare
PP_5028 -1.4 -2.7 proline iminopeptidase compare
PP_1979 -1.4 -1.2 putative Hydrolase compare
PP_0042 -1.4 -2.8 conserved exported protein of unknown function compare
PP_0957 -1.4 -1.1 D-arabinose 5-phosphate isomerase compare
PP_4930 -1.4 -1.5 putative small multidrug resistance protein compare
PP_1788 -1.4 -1.1 conserved protein of unknown function compare
PP_0150 -1.4 -1.2 conserved exported protein of unknown function compare
PP_2422 -1.4 -1.7 conserved protein of unknown function compare
PP_5549 -1.3 -1.6 conserved protein of unknown function compare
PP_2404 -1.3 -2.1 conserved exported protein of unknown function compare
PP_1731 -1.3 -1.7 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_4263 -1.3 -2.1 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_3790 -1.3 -2.7 diaminopimelate epimerase compare
PP_0135 -1.3 -2.3 conserved exported protein of unknown function compare
PP_5168 -1.3 -1.5 sulfate/thiosulfate import ATP-binding protein compare
PP_4760 -1.3 -2.1 Alcohol dehydrogenase, zinc-containing compare
PP_3045 -1.3 -2.6 putative ClpP protease compare
PP_5705 -1.3 -1.2 protein of unknown function compare
PP_2684 -1.3 -1.5 conserved membrane protein of unknown function compare
PP_2433 -1.3 -0.9 conserved protein of unknown function compare
PP_1435 -1.3 -1.9 DNA repair protein RecO compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source Myristic acid in Pseudomonas putida KT2440

For carbon source Myristic acid across organisms