| | gene | name | fitness | t score | description | |
|---|
| b2289 | lrhA | +2.5 | 18.5 | DNA-binding transcriptional repressor of flagellar, motility and chemotaxis genes (NCBI) | compare |
| b2259 | pmrD | +2.1 | 2.8 | polymyxin resistance protein B (VIMSS) | compare |
| b1429 | tehA | +1.9 | 2.1 | potassium-tellurite ethidium and proflavin transporter (NCBI) | compare |
| b2684 | mprA | +1.7 | 7.6 | DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux (NCBI) | compare |
| b4480 | hdfR | +1.3 | 6.5 | transcriptional regulator HdfR (NCBI) | compare |
| b3764 | yifE | +1.2 | 4.9 | hypothetical protein (NCBI) | compare |
| b4416 | rybA | +1.0 | 1.9 | unknown RNA (NCBI) | compare |
| b1217 | chaB | +0.9 | 1.4 | cation transport regulator (NCBI) | compare |
| b2531 | iscR | +0.9 | 1.7 | DNA-binding transcriptional repressor (NCBI) | compare |
| b2114 | metG | +0.9 | 2.4 | methionyl-tRNA synthetase (NCBI) | compare |
| b1618 | uidR | +0.9 | 3.4 | DNA-binding transcriptional repressor (NCBI) | compare |
| b4585 | sroB | +0.9 | 1.4 | Novel sRNA, function unknown (RefSeq) | compare |
| b2093 | gatB | +0.9 | 3.8 | galactitol-specific enzyme IIB component of PTS (NCBI) | compare |
| b2096 | gatY | +0.9 | 3.9 | tagatose-bisphosphate aldolase 1 (VIMSS) | compare |
| b2061 | wzb | +0.8 | 1.9 | protein-tyrosine phosphatase (NCBI) | compare |
| b1642 | slyA | +0.8 | 1.2 | transcriptional regulator for cryptic hemolysin (VIMSS) | compare |
| b1684 | sufA | +0.8 | 2.0 | iron-sulfur cluster assembly scaffold protein (NCBI) | compare |
| b1827 | kdgR | +0.8 | 1.8 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0641 | rlpB | +0.8 | 2.2 | minor lipoprotein (NCBI) | compare |
| b1231 | tyrT | +0.8 | 0.9 | tRNA-Tyr (NCBI) | compare |
| b4394 | yjjX | +0.8 | 2.6 | orf, hypothetical protein (VIMSS) | compare |
| b1651 | gloA | +0.8 | 2.2 | glyoxalase I, Ni-dependent (NCBI) | compare |
| b2145 | yeiS | +0.8 | 3.2 | predicted inner membrane protein (NCBI) | compare |
| b1806 | yeaY | +0.8 | 2.4 | predicted lipoprotein (NCBI) | compare |
| b1606 | folM | +0.8 | 5.0 | short chain dehydrogenase (NCBI) | compare |
| b1296 | ycjJ | +0.8 | 3.3 | putative amino acid/amine transport protein (VIMSS) | compare |
| b4041 | plsB | +0.8 | 1.9 | glycerol-3-phosphate acyltransferase (VIMSS) | compare |
| b4533 | ynfO | +0.8 | 1.4 | Qin prophage; predicted protein (NCBI) | compare |
| b2518 | ndk | +0.8 | 1.7 | nucleoside diphosphate kinase (NCBI) | compare |
| b0881 | clpS | +0.7 | 0.9 | ATP-dependent Clp protease adaptor protein ClpS (NCBI) | compare |
| b1607 | ydgC | +0.7 | 1.3 | conserved inner membrane protein associated with alginate biosynthesis (NCBI) | compare |
| b3658 | selC | +0.7 | 1.9 | tRNA-Sec (NCBI) | compare |
| b1279 | yciS | +0.7 | 0.9 | conserved inner membrane protein (NCBI) | compare |
| b1171 | b1171 | +0.7 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b1573 | ydfC | +0.7 | 1.4 | Qin prophage; predicted protein (RefSeq) | compare |
| b0843 | ybjH | +0.7 | 1.8 | hypothetical protein (NCBI) | compare |
| b4369 | leuP | +0.7 | 1.8 | tRNA-Leu (NCBI) | compare |
| b2807 | ygdD | +0.7 | 2.2 | conserved inner membrane protein (NCBI) | compare |
| b1289 | ycjD | +0.7 | 2.2 | hypothetical protein (NCBI) | compare |
| b1394 | paaG | +0.7 | 1.4 | enoyl-CoA hydratase (NCBI) | compare |
| b1301 | puuB | +0.6 | 2.9 | gamma-Glu-putrescine oxidase, FAD/NAD(P)-binding (NCBI) | compare |
| b2217 | rcsB | +0.6 | 3.5 | DNA-binding response regulator in two-component regulatory system with RcsC and YojN (NCBI) | compare |
| b2303 | folX | +0.6 | 4.1 | D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase and dihydroneopterin aldolase (NCBI) | compare |
| b0580 | ybdJ | +0.6 | 1.9 | predicted inner membrane protein (NCBI) | compare |
| b1846 | yebE | +0.6 | 2.0 | hypothetical protein (NCBI) | compare |
| b4157 | yjeN | +0.6 | 2.6 | hypothetical protein (NCBI) | compare |
| b1007 | b1007 | +0.6 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b4595 | yciY | +0.6 | 1.5 | hypothetical protein (RefSeq) | compare |
| b1867 | yecD | +0.6 | 3.1 | orf, hypothetical protein (VIMSS) | compare |
| b3752 | rbsK | +0.6 | 4.5 | ribokinase (NCBI) | compare |
| b4543 | ypaA | +0.6 | 2.3 | predicted protein (NCBI) | compare |
| b4699 | fnrS | +0.6 | 0.6 | FNR-activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq-dependent; mediates negative FNR regulation (RefSeq) | compare |
| b1359 | ydaU | +0.6 | 1.9 | Rac prophage; conserved protein (NCBI) | compare |
| b0579 | ybdF | +0.6 | 1.2 | hypothetical protein (NCBI) | compare |
| b0682 | ybfN | +0.6 | 2.1 | predicted lipoprotein (NCBI) | compare |
| b1954 | dsrA | +0.6 | 1.8 | regulatory antisense RNA (NCBI) | compare |
| b4589 | ylcI | +0.6 | 1.6 | hypothetical protein (RefSeq) | compare |
| b1242 | ychE | +0.6 | 2.2 | predicted inner membrane protein (NCBI) | compare |
| b4450 | arcZ | +0.6 | 2.0 | sRNA antisense regulator of tpx and sdaA, Hfq-dependent (RefSeq) | compare |
| b2426 | ucpA | +0.6 | 1.0 | putative oxidoreductase (VIMSS) | compare |
| b3890 | yiiF | +0.6 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b2006 | yeeW | +0.6 | 2.1 | CP4-44 prophage; predicted protein (RefSeq) | compare |
| b2281 | nuoI | +0.6 | 1.7 | NADH dehydrogenase subunit I (NCBI) | compare |
| b3769 | ilvM | +0.6 | 2.1 | acetolactate synthase II, small subunit (NCBI) | compare |
| b1343 | dbpA | +0.6 | 2.7 | ATP-dependent RNA helicase, specific for 23S rRNA (NCBI) | compare |
| b0885 | aat | +0.6 | 2.8 | leucyl/phenylalanyl-tRNA--protein transferase (NCBI) | compare |
| b4582 | yoeA | +0.6 | 2.4 | no description | compare |
| b1835 | yebU | +0.6 | 1.8 | putative nucleolar proteins (VIMSS) | compare |
| b2809 | b2809 | +0.6 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b1920 | fliY | +0.6 | 1.0 | cystine transporter subunit (NCBI) | compare |
| b1415 | aldA | +0.6 | 2.3 | Lactaldehyde / glycolaldehyde dehydrogenase aldA (EC 1.2.1.22; EC 1.2.1.21) (from data) | compare |
| b3082 | ygjM | +0.6 | 1.2 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0487 | cueR | +0.6 | 2.5 | DNA-binding transcriptional activator of copper-responsive regulon genes (NCBI) | compare |
| b2439 | eutL | +0.6 | 2.9 | predicted carboxysome structural protein with predicted role in ethanolamine utilization (NCBI) | compare |
| b1478 | adhP | +0.6 | 2.3 | alcohol dehydrogenase (VIMSS) | compare |
| b2195 | ccmG | +0.6 | 1.2 | periplasmic thioredoxin of cytochrome c-type biogenesis (NCBI) | compare |
| b1362 | rzpR | +0.6 | 1.4 | putative Rac prophage endopeptidase (VIMSS) | compare |
| b0200 | gmhB | +0.6 | 0.7 | hypothetical protein (NCBI) | compare |
| b1621 | malX | +0.6 | 2.3 | fused maltose and glucose-specific PTS enzymes: IIB component -! IIC component (NCBI) | compare |
| b4363 | yjjB | +0.6 | 1.6 | conserved inner membrane protein (RefSeq) | compare |
| b3071 | yqjI | +0.6 | 2.1 | predicted transcriptional regulator (NCBI) | compare |
| b3753 | rbsR | +0.5 | 3.7 | DNA-binding transcriptional repressor of ribose metabolism (NCBI) | compare |
| b2279 | nuoK | +0.5 | 1.0 | NADH dehydrogenase subunit K (NCBI) | compare |
| b0947 | ycbX | +0.5 | 2.8 | predicted 2Fe-2S cluster-containing protein (NCBI) | compare |
| b0946 | ycbW | +0.5 | 2.3 | orf, hypothetical protein (VIMSS) | compare |
| b1251 | yciI | +0.5 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b4653 | yicT | +0.5 | 1.3 | no description | compare |
| b1103 | ycfF | +0.5 | 0.8 | orf, hypothetical protein (VIMSS) | compare |
| b1281 | pyrF | +0.5 | 1.2 | orotidine 5'-phosphate decarboxylase (NCBI) | compare |
| b1348 | lar | +0.5 | 1.1 | Rac prophage; restriction alleviation protein (NCBI) | compare |
| b1751 | ydjY | +0.5 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b2614 | grpE | +0.5 | 1.0 | heat shock protein (NCBI) | compare |
| b0388 | aroL | +0.5 | 1.9 | shikimate kinase II (NCBI) | compare |
| b0838 | yliJ | +0.5 | 2.5 | putative transferase (VIMSS) | compare |
| b4627 | ykfL | +0.5 | 2.1 | no description | compare |
| b4578 | insP | +0.5 | 1.5 | no description | compare |
| b0495 | ybbA | +0.5 | 2.2 | predicted transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b2058 | wcaB | +0.5 | 0.6 | predicted acyl transferase (NCBI) | compare |
| b3129 | sohA | +0.5 | 2.2 | predicted regulator (NCBI) | compare |
| b0247 | ykfG | +0.5 | 0.8 | CP4-6 prophage; predicted DNA repair protein (NCBI) | compare |
| b2447 | yffP | +0.5 | 1.5 | CPZ-55 prophage; predicted protein (NCBI) | compare |
| b2506 | yfgI | +0.5 | 1.3 | hypothetical protein (NCBI) | compare |
| b2916 | argP | +0.5 | 2.7 | chromosome replication initiation inhibitor protein (NCBI) | compare |
| b1366 | ydaY | +0.5 | 1.8 | Rac prophage; predicted protein (RefSeq) | compare |
| b3096 | yqjB | +0.5 | 2.2 | hypothetical protein (NCBI) | compare |
| b2906 | visC | +0.5 | 2.4 | hypothetical protein (NCBI) | compare |
| b3361 | fic | +0.5 | 1.9 | stationary-phase protein, cell division (NCBI) | compare |
| b1577 | ydfE | +0.5 | 2.6 | Qin prophage; predicted protein (RefSeq) | compare |
| b3119 | tdcR | +0.5 | 1.3 | threonine dehydratase operon activator protein (VIMSS) | compare |
| b1273 | yciN | +0.5 | 1.0 | hypothetical protein (NCBI) | compare |
| b1101 | ptsG | +0.5 | 3.4 | fused glucose-specific PTS enzymes: IIB component/IIC component (NCBI) | compare |
| b0334 | prpD | +0.5 | 2.5 | 2-methylcitrate dehydratase (NCBI) | compare |
| b1956 | b1956 | +0.5 | 2.2 | orf, hypothetical protein (VIMSS) | compare |
| b4685 | yrbN | +0.5 | 1.2 | expressed protein (RefSeq) | compare |
| b1524 | yneH | +0.5 | 0.4 | predicted glutaminase (NCBI) | compare |
| b0412 | yajI | +0.5 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b2689 | yqaA | +0.5 | 1.3 | conserved inner membrane protein (NCBI) | compare |
| b1548 | nohA | +0.5 | 0.7 | Qin prophage; predicted packaging protein (RefSeq) | compare |
| b1728 | ydjM | +0.5 | 1.4 | predicted inner membrane protein regulated by LexA (RefSeq) | compare |
| b3149 | yraO | +0.5 | 2.3 | DnaA initiator-associating factor for replication initiation (NCBI) | compare |
| b2646 | ypjF | +0.5 | 1.3 | CP4-57 prophage; toxin of the YpjF-YfjZ toxin-antitoxin system (NCBI) | compare |
| b0777 | bioC | +0.5 | 2.6 | predicted methltransferase, enzyme of biotin synthesis (NCBI) | compare |
| b2448 | yffQ | +0.5 | 1.3 | CPZ-55 prophage; predicted protein (RefSeq) | compare |
| b0866 | ybjQ | +0.5 | 0.7 | hypothetical protein (NCBI) | compare |
| b1487 | ddpA | +0.5 | 1.5 | D-ala-D-a la transporter subunit (NCBI) | compare |
| b0801 | ybiC | +0.5 | 2.6 | predicted dehydrogenase (NCBI) | compare |
| b1749 | xthA | +0.5 | 2.1 | exonuclease III (NCBI) | compare |
| b1434 | ydcN | +0.5 | 0.7 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1622 | malY | +0.5 | 1.8 | bifunctional beta-cystathionase, PLP-dependent/ regulator of maltose regulon (NCBI) | compare |
| b3107 | yhaL | +0.5 | 0.8 | orf, hypothetical protein (VIMSS) | compare |
| b2187 | yejL | +0.5 | 1.0 | hypothetical protein (NCBI) | compare |
| b1763 | topB | +0.4 | 1.1 | DNA topoisomerase III (NCBI) | compare |
| b2635 | ypjK | +0.4 | 1.3 | CP4-57 prophage; predicted inner membrane protein (NCBI) | compare |
| b2934 | cmtB | +0.4 | 0.4 | predicted mannitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b1438 | ydcQ | +0.4 | 1.6 | predicted DNA-binding transcriptional regulator (RefSeq) | compare |
| b2349 | intS | +0.4 | 2.1 | CPS-53 (KpLE1) prophage; predicted prophage CPS-53 integrase (NCBI) | compare |
| b2282 | nuoH | +0.4 | 1.5 | NADH dehydrogenase subunit H (NCBI) | compare |
| b1312 | ycjP | +0.4 | 2.6 | predicted sugar transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b3455 | livG | +0.4 | 2.1 | leucine/isoleucine/valine transporter subunit (NCBI) | compare |
| b4490 | efeU | +0.4 | 2.7 | no description | compare |
| b0357 | yaiN | +0.4 | 0.8 | putative alpha helix chain (VIMSS) | compare |
| b2811 | ygdK | +0.4 | 1.3 | predicted Fe-S metabolism protein (NCBI) | compare |
| b2193 | narP | +0.4 | 1.9 | DNA-binding response regulator in two-component regulatory system with NarQ or NarX (NCBI) | compare |
| b1640 | ydhH | +0.4 | 1.2 | anhydro-N-acetylmuramic acid kinase (NCBI) | compare |
| b0365 | tauA | +0.4 | 1.9 | taurine transport system periplasmic protein (VIMSS) | compare |
| b2989 | b2989 | +0.4 | 2.1 | orf, hypothetical protein (VIMSS) | compare |
| b1765 | ydjA | +0.4 | 0.5 | predicted oxidoreductase (NCBI) | compare |
| b4301 | sgcE | +0.4 | 1.9 | ribulose-phosphate 3-epimerase (NCBI) | compare |
| b1742 | b1742 | +0.4 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b1537 | ydeJ | +0.4 | 1.9 | competence damage-inducible protein A (NCBI) | compare |
| b1698 | ydiR | +0.4 | 1.3 | predicted electron transfer flavoprotein, FAD-binding (NCBI) | compare |
| b0109 | nadC | +0.4 | 2.0 | nicotinate-nucleotide pyrophosphorylase (NCBI) | compare |
| b1913 | uvrC | +0.4 | 2.4 | excinuclease ABC, subunit C; repair of UV damage to DNA (VIMSS) | compare |
| b4225 | chpB | +0.4 | 1.9 | toxin of the ChpB-ChpS toxin-antitoxin system (NCBI) | compare |
| b1233 | ychJ | +0.4 | 1.6 | hypothetical protein (NCBI) | compare |
| b4571 | wbbL | +0.4 | 1.2 | no description | compare |
| b2582 | trxC | +0.4 | 1.2 | thioredoxin 2 (NCBI) | compare |
| b0925 | ycbB | +0.4 | 2.5 | predicted carboxypeptidase (NCBI) | compare |
| b0428 | cyoE | +0.4 | 2.2 | protoheme IX farnesyltransferase (NCBI) | compare |
| b1379 | hslJ | +0.4 | 1.8 | heat-inducible protein (NCBI) | compare |
| b1729 | ydjN | +0.4 | 1.5 | predicted transporter (NCBI) | compare |
| b1904 | yecR | +0.4 | 1.2 | hypothetical protein (NCBI) | compare |
| b2209 | eco | +0.4 | 0.6 | ecotin precursor (NCBI) | compare |
| b2298 | yfcC | +0.4 | 2.3 | putative S-transferase (VIMSS) | compare |
| b1812 | pabB | +0.4 | 2.0 | para-aminobenzoate synthase component I (NCBI) | compare |
| b2136 | yohD | +0.4 | 0.8 | orf, hypothetical protein (VIMSS) | compare |
| b2674 | nrdI | +0.4 | 1.7 | hypothetical protein (NCBI) | compare |
| b1504 | ydeS | +0.4 | 1.8 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b4360 | yjjA | +0.4 | 1.2 | putative glycoprotein/receptor (VIMSS) | compare |
| b1380 | ldhA | +0.4 | 0.9 | D-lactate dehydrogenase (NCBI) | compare |
| b1743 | spy | +0.4 | 2.3 | envelope stress induced periplasmic protein (NCBI) | compare |
| b0818 | ybiR | +0.4 | 2.3 | predicted transporter (NCBI) | compare |
| b2446 | yffO | +0.4 | 1.1 | CPZ-55 prophage; predicted protein (NCBI) | compare |
| b2156 | lysP | +0.4 | 2.8 | lysine transporter (NCBI) | compare |
| b2019 | hisG | +0.4 | 2.2 | ATP phosphoribosyltransferase (NCBI) | compare |
| b1306 | pspC | +0.4 | 1.4 | DNA-binding transcriptional activator (NCBI) | compare |
| b0065 | yabI | +0.4 | 1.7 | conserved inner membrane protein (NCBI) | compare |
| b4484 | cpxP | +0.4 | 1.6 | periplasmic protein combats stress (NCBI) | compare |
| b4565 | sgcB | +0.4 | 1.5 | predicted enzyme IIB component of PTS (NCBI) | compare |
| b0505 | allA | +0.4 | 1.4 | ureidoglycolate hydrolase (NCBI) | compare |
| b1200 | b1200 | +0.4 | 1.8 | putative dihydroxyacetone kinase (EC 2.7.1.2) (VIMSS) | compare |
| b4598 | yncL | +0.4 | 0.9 | hypothetical protein (RefSeq) | compare |
| b0967 | yccW | +0.4 | 1.9 | predicted methyltransferase (RefSeq) | compare |
| b3141 | agaI | +0.4 | 1.9 | galactosamine-6-phosphate isomerase (NCBI) | compare |
| b0870 | ltaE | +0.4 | 1.3 | L-allo-threonine aldolase, PLP-dependent (NCBI) | compare |
| b1661 | cfa | +0.4 | 1.3 | cyclopropane fatty acyl phospholipid synthase (unsaturated-phospholipid methyltransferase) (NCBI) | compare |
| b1916 | sdiA | +0.4 | 2.6 | DNA-binding transcriptional activator (NCBI) | compare |
| b2082 | ogrK | +0.4 | 1.4 | DNA-binding transcriptional regulator prophage P2 remnant (NCBI) | compare |
| b3404 | envZ | +0.4 | 2.5 | osmolarity sensor protein (NCBI) | compare |
| b3057 | bacA | +0.4 | 2.0 | undecaprenyl pyrophosphate phosphatase (NCBI) | compare |
| b1793 | yoaF | +0.4 | 1.2 | conserved outer membrane protein (NCBI) | compare |
| b1414 | ydcF | +0.4 | 1.8 | hypothetical protein (NCBI) | compare |
| b0252 | yafZ | +0.4 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b0187 | yaeR | +0.4 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b3033 | yqiB | +0.4 | 2.0 | predicted dehydrogenase (NCBI) | compare |
| b2023 | hisH | +0.4 | 1.7 | imidazole glycerol phosphate synthase subunit HisH (NCBI) | compare |
| b2741 | rpoS | +0.4 | 1.6 | RNA polymerase sigma factor (NCBI) | compare |
| b1264 | trpE | +0.4 | 2.1 | anthranilate synthase component I (NCBI) | compare |
| b1120 | cobB | +0.4 | 1.2 | deacetylase of acs and cheY, regulates chemotaxis (NCBI) | compare |
| b0387 | yaiI | +0.4 | 1.7 | orf, hypothetical protein (VIMSS) | compare |