Experiment set10IT061 for Pseudomonas simiae WCS417

Compare to:

soil sample 4; outgrowth in LB

200 most important genes:

  gene name fitness t score description  
PS417_13795 -6.7 -6.5 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_13800 -6.7 -3.6 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_16005 -6.2 -3.4 ATPase compare
PS417_27865 -6.2 -3.2 LysR family transcriptional regulator compare
PS417_01710 -5.8 -5.4 histidine utilization repressor compare
PS417_01575 -5.8 -3.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_14065 -5.7 -4.0 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_13820 -5.7 -5.8 UDP-glucose 6-dehydrogenase compare
PS417_24710 -5.6 -7.0 lipoprotein compare
PS417_23805 -5.4 -4.2 acetolactate synthase 3 regulatory subunit compare
PS417_25700 -5.2 -2.8 cyclic AMP receptor protein compare
PS417_02975 -5.2 -5.3 3-dehydroquinate dehydratase compare
PS417_16510 -5.0 -3.2 Clp protease ClpX compare
PS417_13510 -4.9 -1.3 polyketide cyclase compare
PS417_24835 -4.6 -4.0 hypothetical protein compare
PS417_20635 -4.6 -1.3 ABC transporter ATP-binding protein compare
PS417_13790 -4.4 -3.7 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_25650 -4.4 -3.7 anhydro-N-acetylmuramic acid kinase compare
PS417_17565 -4.4 -3.2 branched-chain amino acid aminotransferase compare
PS417_19885 -4.4 -1.5 flagellar basal body rod protein FlgG compare
PS417_03310 -4.3 -7.8 carbonate dehydratase compare
PS417_01855 -4.2 -2.8 phosphoribosyl-AMP cyclohydrolase compare
PS417_04415 -4.2 -6.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_23810 -4.1 -12.2 acetolactate synthase 3 catalytic subunit compare
PS417_03560 -4.1 -2.3 GTP-binding protein compare
PS417_22990 -4.1 -2.0 iron dicitrate transport regulator FecR compare
PS417_04270 -4.1 -8.3 ribonuclease G compare
PS417_02560 -4.0 -2.2 23S rRNA methyltransferase compare
PS417_16990 -4.0 -4.5 acyl-CoA dehydrogenase compare
PS417_22570 -3.9 -1.1 H-NS histone compare
PS417_06530 -3.9 -3.2 membrane protein compare
PS417_05815 -3.9 -4.7 recombinase RecA compare
PS417_27040 -3.9 -3.1 3-phosphoglycerate dehydrogenase compare
PS417_24745 -3.9 -2.2 gamma-glutamyl phosphate reductase compare
PS417_18600 -3.9 -2.5 isopropylmalate isomerase compare
PS417_23995 -3.9 -1.1 preprotein translocase subunit SecG compare
PS417_04050 -3.8 -2.4 peptide ABC transporter ATP-binding protein compare
PS417_22690 -3.8 -4.3 phosphogluconate dehydratase compare
PS417_07470 -3.8 -1.7 hypothetical protein compare
PS417_27640 -3.7 -1.5 TetR family transcriptional regulator compare
PS417_26985 -3.7 -2.8 phosphoenolpyruvate-protein phosphotransferase compare
PS417_20985 -3.6 -2.4 porin compare
PS417_18390 -3.6 -5.1 LacI family transcriptional regulator compare
PS417_22520 -3.6 -1.9 histidine kinase compare
PS417_23250 -3.5 -6.2 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_18055 -3.5 -1.4 general secretion pathway protein GspK compare
PS417_23370 -3.5 -5.1 protoheme IX farnesyltransferase compare
PS417_07565 -3.5 -2.8 hypothetical protein compare
PS417_23915 -3.4 -4.1 pantoate--beta-alanine ligase compare
PS417_06375 -3.4 -0.9 deoxycytidine triphosphate deaminase compare
PS417_24800 -3.4 -3.3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_21595 -3.4 -2.3 flagellar biosynthesis protein FlgN compare
PS417_01920 -3.3 -1.2 ATP-dependent protease subunit HslV compare
PS417_02510 -3.2 -6.3 ATP phosphoribosyltransferase regulatory subunit compare
PS417_18595 -3.2 -3.1 3-isopropylmalate dehydratase compare
PS417_26990 -3.2 -1.2 RNA pyrophosphohydrolase compare
PS417_22775 -3.2 -7.1 histidine kinase compare
PS417_02950 -3.2 -3.8 tRNA-dihydrouridine synthase B compare
PS417_23800 -3.2 -10.1 ketol-acid reductoisomerase compare
PS417_17780 -3.2 -1.2 Ais protein compare
PS417_08125 -3.1 -0.9 prephenate dehydratase compare
PS417_01560 -3.1 -2.1 imidazoleglycerol-phosphate dehydratase compare
PS417_03260 -3.1 -1.1 5S ribosomal RNA compare
PS417_21510 -3.1 -2.1 histidine kinase compare
PS417_12805 -3.0 -9.1 glycogen branching protein compare
PS417_04380 -3.0 -1.8 ABC transporter permease compare
PS417_23545 -3.0 -2.9 gamma-glutamyl kinase compare
PS417_24785 -3.0 -2.2 nucleoside-diphosphate sugar epimerase compare
PS417_00510 -3.0 -1.1 membrane protein compare
PS417_04385 -3.0 -3.9 organic solvent ABC transporter substrate-binding protein compare
PS417_26220 -3.0 -2.7 Rieske (2Fe-2S) protein compare
PS417_23770 -3.0 -1.7 exodeoxyribonuclease V subunit alpha compare
PS417_01605 -2.9 -1.5 phosphoglycerate mutase compare
PS417_19735 -2.8 -3.8 flagellar biosynthesis protein FliQ compare
PS417_19860 -2.8 -11.2 flagellar hook protein FlgL compare
PS417_27195 -2.8 -1.1 N-acetylglutamate synthase compare
PS417_19695 -2.8 -6.1 flagellar biosynthesis sigma factor compare
PS417_02415 -2.8 -4.1 phosphoserine phosphatase compare
PS417_08135 -2.8 -5.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_19725 -2.8 -3.4 flagellar biosynthesis protein FlhB compare
PS417_16555 -2.8 -2.1 cupin compare
PS417_13805 -2.7 -5.9 4-amino-4-deoxy-L-arabinose transferase compare
PS417_04420 -2.7 -6.2 histidinol dehydrogenase compare
PS417_07560 -2.7 -1.2 universal stress protein UspA compare
PS417_24615 -2.7 -1.0 hypothetical protein compare
PS417_18105 -2.7 -1.5 iron-dicitrate transporter substrate-binding subunit compare
PS417_18585 -2.7 -2.8 3-isopropylmalate dehydrogenase compare
PS417_22565 -2.7 -0.7 formyltetrahydrofolate deformylase compare
PS417_23380 -2.7 -2.4 cytochrome o ubiquinol oxidase subunit III compare
PS417_19850 -2.6 -6.4 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_06500 -2.6 -1.3 hypothetical protein compare
PS417_22780 -2.6 -3.1 XRE family transcriptional regulator compare
PS417_25790 -2.6 -3.2 aminoglycoside phosphotransferase compare
PS417_15745 -2.5 -1.8 lipid carrier protein compare
PS417_09210 -2.5 -1.6 TetR family transcriptional regulator compare
PS417_19865 -2.5 -8.7 flagellar hook protein FlgK compare
PS417_26890 -2.5 -4.7 dihydroxy-acid dehydratase compare
PS417_27300 -2.5 -1.0 cell division protein ZapA compare
PS417_07640 -2.5 -2.3 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_22445 -2.5 -2.9 ATP-dependent DNA helicase RuvB compare
PS417_24370 -2.5 -1.0 (2Fe-2S)-binding protein compare
PS417_02005 -2.5 -6.6 glutamate synthase compare
PS417_23390 -2.5 -6.1 ubiquinol oxidase subunit II compare
PS417_08410 -2.5 -2.4 hypothetical protein compare
PS417_02000 -2.5 -9.6 glutamate synthase compare
PS417_04365 -2.4 -0.9 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_26745 -2.4 -4.6 methionine biosynthesis protein MetW compare
PS417_26740 -2.4 -5.5 homoserine acetyltransferase compare
PS417_16720 -2.4 -1.2 membrane protein compare
PS417_19745 -2.4 -3.3 flagellar assembly protein FliO compare
PS417_23375 -2.4 -1.6 cytochrome C oxidase compare
PS417_19840 -2.4 -8.1 flagellar cap protein FliD compare
PS417_21655 -2.4 -0.9 aspartate kinase compare
PS417_01580 -2.4 -1.3 imidazole glycerol phosphate synthase compare
PS417_26730 -2.4 -0.9 pyrroline-5-carboxylate reductase compare
PS417_02280 -2.3 -1.9 GlcNAc-PI de-N-acetylase compare
PS417_21585 -2.3 -6.2 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_06680 -2.3 -8.5 nuclease PIN compare
PS417_21630 -2.3 -2.6 magnesium transporter compare
PS417_04340 -2.3 -4.3 ribosome hibernation promoting factor HPF compare
PS417_19335 -2.3 -2.0 isochorismatase compare
PS417_17490 -2.3 -2.0 ABC transporter ATP-binding protein compare
PS417_12695 -2.2 -3.8 mannitol dehydrogenase compare
PS417_04375 -2.2 -2.5 ABC transporter ATP-binding protein compare
PS417_15495 -2.2 -4.0 FAD-dependent oxidoreductase compare
PS417_07710 -2.2 -6.3 membrane protein compare
PS417_06945 -2.2 -1.1 membrane protein compare
PS417_18530 -2.1 -4.1 O-succinylhomoserine sulfhydrylase compare
PS417_16490 -2.1 -1.1 cell division protein FtsK compare
PS417_01850 -2.1 -2.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_12855 -2.1 -3.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_21555 -2.1 -6.0 flagellar hook protein FlgE compare
PS417_21850 -2.1 -1.2 LysR family transcriptional regulator compare
PS417_27870 -2.1 -2.3 ATP-dependent DNA helicase RecG compare
PS417_08090 -2.1 -0.8 3-oxoacyl-ACP reductase compare
PS417_06600 -2.1 -0.8 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_01565 -2.1 -1.8 imidazole glycerol phosphate synthase compare
PS417_17215 -2.1 -2.0 peptidylprolyl isomerase compare
PS417_02110 -2.1 -1.4 acyl carrier protein compare
PS417_19835 -2.0 -1.4 flagellar biosynthesis protein FliS compare
PS417_24705 -2.0 -1.9 D-alanyl-D-alanine carboxypeptidase compare
PS417_19705 -2.0 -1.5 flagellar biosynthesis regulator FlhF compare
PS417_23385 -2.0 -6.2 cytochrome o ubiquinol oxidase subunit I compare
PS417_21430 -2.0 -1.9 3-oxoacyl-ACP synthase compare
PS417_22135 -2.0 -9.0 glucose/xylose ABC transporter, permease component 1 (from data) compare
PS417_19795 -2.0 -7.2 flagellar assembly protein FliH compare
PS417_14920 -1.9 -4.0 CoA-transferase compare
PS417_27445 -1.9 -5.3 membrane protein compare
PS417_06845 -1.9 -1.3 lipoprotein compare
PS417_13735 -1.9 -1.0 hypothetical protein compare
PS417_21125 -1.9 -5.8 phosphoadenosine phosphosulfate reductase compare
PS417_12120 -1.9 -3.2 IclR family transcriptional regulator compare
PS417_16500 -1.9 -4.7 arginyl-tRNA-protein transferase compare
PS417_22815 -1.8 -4.2 permease compare
PS417_21570 -1.8 -1.7 flagellar basal body rod protein FlgB compare
PS417_27535 -1.8 -4.9 chemotaxis protein CheY compare
PS417_08685 -1.8 -1.5 flagellar hook-length control protein FliK compare
PS417_08025 -1.8 -1.0 acetylornithine aminotransferase compare
PS417_23025 -1.8 -5.9 murein transglycosylase compare
PS417_19730 -1.8 -1.3 flagellar biosynthesis protein FliR compare
PS417_23910 -1.8 -4.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_20130 -1.8 -6.2 dehydrogenase compare
PS417_21830 -1.8 -2.5 TetR family transcriptional regulator compare
PS417_19350 -1.8 -3.6 GTP cyclohydrolase compare
PS417_27800 -1.8 -4.0 exodeoxyribonuclease III compare
PS417_21575 -1.8 -4.2 chemotaxis protein compare
PS417_12005 -1.8 -3.0 hypothetical protein compare
PS417_15540 -1.8 -1.1 NUDIX hydrolase compare
PS417_04390 -1.8 -2.9 toluene tolerance protein compare
PS417_17125 -1.7 -2.7 transcriptional regulator compare
PS417_22850 -1.7 -4.9 virulence factor family protein compare
PS417_20855 -1.7 -1.1 hypothetical protein compare
PS417_27305 -1.7 -3.9 5-formyltetrahydrofolate cyclo-ligase compare
PS417_00185 -1.7 -2.6 tryptophan synthase subunit beta compare
PS417_00650 -1.7 -0.8 LysR family transcriptional regulator compare
PS417_19765 -1.7 -3.9 flagellar hook-length control protein compare
PS417_05595 -1.7 -3.5 ornithine carbamoyltransferase compare
PS417_03165 -1.7 -3.0 hypothetical protein compare
PS417_19740 -1.7 -3.8 flagellar biosynthesis protein flip compare
PS417_18560 -1.7 -4.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_04595 -1.7 -1.9 cell division protein MraZ compare
PS417_23110 -1.7 -5.1 2-isopropylmalate synthase compare
PS417_19065 -1.6 -0.9 monooxygenase compare
PS417_22450 -1.6 -1.1 ATP-dependent DNA helicase RuvA compare
PS417_27595 -1.6 -1.6 recombinase XerC compare
PS417_23580 -1.6 -1.0 peptidylprolyl isomerase compare
PS417_25720 -1.6 -3.4 anthranilate synthase component II compare
PS417_00180 -1.6 -1.8 tryptophan synthase subunit alpha compare
PS417_27585 -1.6 -1.8 diaminopimelate epimerase compare
PS417_01340 -1.6 -4.7 agmatine deiminase compare
PS417_24295 -1.6 -3.8 carbon starvation protein A compare
PS417_26465 -1.6 -1.5 hypothetical protein compare
PS417_15105 -1.6 -5.9 membrane protein compare
PS417_19675 -1.6 -4.2 chemotaxis protein CheY compare
PS417_03935 -1.6 -2.2 N-acetyl-anhydromuranmyl-L-alanine amidase compare
PS417_25645 -1.6 -4.5 peptidase M23 compare
PS417_10335 -1.6 -1.7 peroxiredoxin compare
PS417_26235 -1.6 -3.7 (Fe-S)-binding protein compare
PS417_18540 -1.6 -2.2 colicin V production CvpA compare
PS417_09085 -1.6 -1.2 hypothetical protein compare


Specific Phenotypes

For 14 genes in this experiment