Experiment set10IT061 for Pseudomonas putida KT2440

Compare to:

Lauric acid carbon source

200 most important genes:

  gene name fitness t score description  
PP_5659 -6.9 -4.7 protein of unknown function compare
PP_1985 -6.6 -4.6 3-isopropylmalate dehydratase large subunit compare
PP_0691 -5.8 -4.0 Glutamate 5-kinase compare
PP_4890 -5.5 -7.6 ATP phosphoribosyltransferase regulatory subunit compare
PP_1986 -5.4 -3.7 3-isopropylmalate dehydratase small subunit compare
PP_4680 -5.1 -17.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2136 -5.1 -4.9 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_0083 -5.0 -7.7 tryptophan synthase beta chain compare
PP_0356 -5.0 -11.5 malate synthase G compare
PP_5015 -5.0 -5.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4679 -4.9 -8.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0293 -4.8 -3.4 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4116 -4.7 -14.3 isocitrate lyase compare
PP_0967 -4.6 -11.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0082 -4.6 -7.6 tryptophan synthase alpha chain compare
PP_1988 -4.5 -8.3 3-isopropylmalate dehydrogenase compare
PP_4723 -4.5 -13.3 Carbamoyl-phosphate synthase large chain compare
PP_0184 -4.3 -7.2 Argininosuccinate lyase compare
PP_0966 -4.3 -9.8 Histidinol dehydrogenase compare
PP_4678 -4.3 -12.4 Ketol-acid reductoisomerase compare
PP_3511 -4.3 -8.3 Branched-chain-amino-acid aminotransferase compare
PP_0965 -4.3 -7.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0420 -4.3 -11.4 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_3505 -4.3 -3.2 conserved protein of unknown function compare
PP_0290 -4.2 -7.9 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4699 -4.1 -4.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1995 -4.1 -10.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0421 -4.1 -6.7 Anthranilate phosphoribosyltransferase compare
PP_3999 -4.0 -6.7 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5098 -3.9 -7.6 methionine biosynthesis protein MetW compare
PP_0417 -3.8 -14.5 Anthranilate synthase component 1 compare
PP_5155 -3.8 -6.9 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5128 -3.6 -7.7 Dihydroxy-acid dehydratase compare
PP_1088 -3.6 -11.3 Argininosuccinate synthase compare
PP_0368 -3.5 -10.3 putative Acyl-CoA dehydrogenase compare
PP_4549 -3.5 -9.6 long-chain-fatty-acid/CoA ligase compare
PP_4700 -3.5 -2.4 pantothenate synthetase compare
PP_2370 -3.4 -4.0 conserved protein of unknown function compare
PP_5289 -3.4 -5.7 Acetylglutamate kinase compare
PP_5303 -3.4 -5.6 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1025 -3.4 -10.3 2-isopropylmalate synthase compare
PP_0292 -3.3 -3.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_2371 -3.3 -5.8 Sulphite reductase hemoprotein, beta subunit compare
PP_2327 -3.1 -8.0 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0422 -3.1 -5.0 Indole-3-glycerol phosphate synthase compare
PP_0289 -3.1 -6.1 Imidazoleglycerol-phosphate dehydratase compare
PP_5014 -3.1 -3.8 Phosphoribosyl-AMP cyclohydrolase compare
PP_2001 -3.0 -7.0 O-succinylhomoserine sulfhydrylase compare
PP_5007 -3.0 -3.8 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_4909 -2.9 -6.5 phosphoserine phosphatase compare
PP_1079 -2.9 -4.3 Ornithine carbamoyltransferase compare
PP_4999 -2.9 -3.0 dihydroorotase-like protein compare
PP_5185 -2.9 -5.0 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4122 -2.8 -1.9 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4724 -2.8 -4.2 Carbamoyl-phosphate synthase small chain compare
PP_2137 -2.8 -3.0 beta-ketoadipyl CoA thiolase, beta component compare
PP_5097 -2.8 -9.7 homoserine O-acetyltransferase compare
PP_5346 -2.8 -9.2 pyruvate carboxylase subunit B compare
PP_5347 -2.7 -9.1 pyruvate carboxylase subunit A compare
PP_0065 -2.6 -3.9 NAD-binding component of TrK potassium transporter compare
PP_2328 -2.4 -6.2 Phosphoadenosine phosphosulfate reductase compare
PP_5085 -2.4 -6.1 malic enzyme B compare
PP_5348 -2.1 -7.5 Transcriptional regulator, LysR family compare
PP_5051 -2.1 -2.5 conserved protein of unknown function compare
PP_0291 -2.0 -2.6 conserved protein of unknown function compare
PP_5227 -2.0 -7.2 diaminopimelate decarboxylase compare
PP_5095 -2.0 -1.9 pyrroline-5-carboxylate reductase compare
PP_4532 -1.8 -1.7 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_2429 -1.8 -2.6 putative Membrane protein compare
PP_0957 -1.7 -2.2 D-arabinose 5-phosphate isomerase compare
PP_0833 -1.7 -2.2 queuine tRNA-ribosyltransferase compare
PP_2402 -1.7 -2.4 putative Sensor histidine kinase compare
PP_1689 -1.7 -9.5 putative Long-chain fatty acid transporter compare
PP_4793 -1.7 -2.2 conserved protein of unknown function compare
PP_1629 -1.7 -5.2 Protein RecA compare
PP_2118 -1.6 -2.3 conserved protein of unknown function compare
PP_1912 -1.6 -3.2 Phosphate acyltransferase compare
PP_4696 -1.6 -3.8 Nitrogen regulation protein NR(I) compare
PP_1231 -1.6 -4.7 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5217 -1.6 -11.3 Polyphosphate kinase compare
PP_5267 -1.5 -2.4 putative cytochrome c5 compare
PP_2356 -1.5 -5.5 putative Phytochrome family protein compare
PP_1142 -1.5 -1.6 conserved protein of unknown function compare
PP_1303 -1.5 -4.5 Sulfate adenylyltransferase subunit 2 compare
PP_4354 -1.5 -2.1 flagellar export apparatus subunit compare
PP_0370 -1.5 -8.6 Acyl-CoA dehydrogenase family protein compare
PP_3876 -1.5 -2.6 conserved protein of unknown function compare
PP_1672 -1.5 -3.5 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_5248 -1.4 -1.8 putative hydrolase compare
PP_1428 -1.4 -1.0 Sigma factor AlgU negative regulatory protein compare
PP_4829 -1.4 -2.3 putative precorrin-3B synthase compare
PP_4830 -1.4 -3.1 precorrin-6Y C(5,15)-methyltransferase compare
PP_1654 -1.3 -2.1 cysteine synthase B compare
PP_4828 -1.3 -1.4 Precorrin-8X methylmutase compare
PP_5456 -1.3 -1.4 conserved protein of unknown function compare
PP_2145 -1.3 -6.0 beta-N-acetylglucosaminidase compare
PP_0007 -1.3 -1.6 conserved hypothetical protein compare
PP_2619 -1.2 -3.8 FHA domain protein compare
PP_0787 -1.2 -2.5 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_t57 -1.2 -2.7 tRNA-Arg compare
PP_5324 -1.2 -1.9 Response regulator compare
PP_2388 -1.2 -1.7 Transporter, LysE family compare
PP_3506 -1.2 -2.8 Magnesium chelatase, subunit ChII compare
PP_1676 -1.2 -3.5 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_2880 -1.2 -1.4 Transcriptional regulator, TetR family compare
PP_3243 -1.2 -1.9 Acetyltransferase, GNAT family compare
PP_2168 -1.2 -4.5 Transaldolase compare
PP_3790 -1.2 -4.5 diaminopimelate epimerase compare
PP_0653 -1.2 -1.3 conserved protein of unknown function compare
PP_4895 -1.1 -2.6 tRNA dimethylallyltransferase compare
PP_4504 -1.1 -1.6 conserved exported protein of unknown function compare
PP_4977 -1.1 -5.4 5,10-methylenetetrahydrofolate reductase compare
PP_2773 -1.1 -1.5 conserved protein of unknown function compare
PP_4880 -1.1 -5.5 exoribonuclease R compare
PP_0393 -1.1 -1.5 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_3766 -1.1 -2.0 Lactoylglutathione lyase compare
PP_5253 -1.1 -2.4 Arylesterase compare
PP_0905 -1.1 -1.3 conserved exported protein of unknown function compare
PP_4120 -1.1 -2.8 NADH-quinone oxidoreductase subunit B compare
PP_3808 -1.1 -1.5 Antibiotic synthesis protein MbtH compare
PP_1528 -1.1 -0.8 conserved protein of unknown function compare
PP_3481 -1.1 -1.8 conserved exported protein of unknown function compare
PP_1673 -1.1 -3.5 cobyrinate a,c-diamide synthase compare
PP_4008 -1.1 -3.5 ATP-dependent serine protease compare
PP_2510 -1.1 -1.4 conserved protein of unknown function compare
PP_0565 -1.0 -2.8 putative enzyme compare
PP_4385 -1.0 -3.5 flagellar basal-body rod protein FlgG compare
PP_4782 -1.0 -3.0 Phosphomethylpyrimidine kinase compare
PP_1681 -1.0 -4.5 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_5571 -1.0 -1.1 conserved protein of unknown function compare
PP_3938 -1.0 -1.5 conserved protein of unknown function compare
PP_1552 -1.0 -2.9 putative Phage replication protein compare
PP_3539 -1.0 -2.0 putative Transcriptional regulator compare
PP_0794 -1.0 -2.3 1-phosphofructokinase monomer compare
PP_3346 -1.0 -2.1 Nickel transporter ATP-binding protein compare
PP_3241 -1.0 -0.9 conserved exported protein of unknown function compare
PP_4832 -1.0 -1.8 Precorrin-6x reductase compare
PP_2375 -1.0 -5.1 cobalamin-dependent methionine synthase compare
PP_0248 -1.0 -5.5 Probable alpha-L-glutamate ligase compare
PP_4827 -1.0 -4.2 Precorrin-2 C(20)-methyltransferase compare
PP_3919 -1.0 -2.2 conserved protein of unknown function compare
PP_5167 -1.0 -1.6 conserved hypothetical protein compare
PP_1679 -1.0 -2.0 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_2390 -1.0 -4.2 Transcriptional regulator, LysR family compare
PP_2354 -1.0 -4.3 Sensory box histidine kinase/response regulator compare
PP_2540 -0.9 -2.2 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_1344 -0.9 -1.3 conserved protein of unknown function compare
PP_3519 -0.9 -1.0 putative Lipoprotein compare
PP_1664 -0.9 -1.6 phosphoribosylglycinamide formyltransferase 1 compare
PP_1304 -0.9 -4.4 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_4383 -0.9 -2.6 Flagellar P-ring protein compare
PP_2030 -0.9 -2.1 conserved protein of unknown function compare
PP_5705 -0.9 -0.9 protein of unknown function compare
PP_4396 -0.9 -2.2 conserved protein of unknown function compare
PP_5471 -0.9 -1.0 putative response regulator receiver protein compare
PP_0086 -0.9 -1.3 conserved protein of unknown function compare
PP_2616 -0.9 -1.3 conserved protein of unknown function compare
PP_3507 -0.9 -4.8 Aerobic cobaltochelatase subunit CobN compare
PP_1364 -0.9 -4.5 conserved exported protein of unknown function compare
PP_4681 -0.9 -1.4 conserved protein of unknown function compare
PP_3902 -0.9 -1.5 conserved protein of unknown function compare
PP_4213 -0.9 -1.5 putative dipeptidase compare
PP_4826 -0.9 -2.4 Precorrin-3B C17-methyltransferase compare
PP_1764 -0.8 -3.8 Phosphoglycolate phosphatase 2 compare
PP_1677 -0.8 -2.9 Adenosyl-cobyric acid synthase compare
PP_4581 -0.8 -2.3 putative amidotransferase compare
PP_1864 -0.8 -2.4 conserved protein of unknown function compare
PP_4358 -0.8 -3.0 flagellar synthesis, switching and energizing component compare
PP_0361 -0.8 -1.6 putative Competence protein ComF compare
PP_2433 -0.8 -0.9 conserved protein of unknown function compare
PP_1770 -0.8 -1.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_1310 -0.8 -1.6 conserved hypothetical protein compare
PP_1675 -0.8 -2.5 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_3730 -0.8 -1.2 Transcriptional regulatory protein AruR compare
PP_4642 -0.8 -0.8 Cyclic diguanosine monophosphate-binding protein compare
PP_0610 -0.8 -1.4 conserved exported protein of unknown function compare
PP_4352 -0.8 -5.1 flagellin export apparatus, substrate specificity protein compare
PP_4238 -0.8 -2.5 conserved protein of unknown function compare
PP_4388 -0.8 -5.5 Flagellar hook protein FlgE compare
PP_5604 -0.8 -0.9 putative subtilisin-like serine protease compare
PP_4917 -0.8 -1.8 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_4874 -0.8 -0.9 50S ribosomal protein L9 compare
PP_4409 -0.8 -3.3 Site-specific recombinase, phage integrase family compare
PP_5486 -0.8 -1.2 conserved protein of unknown function compare
PP_3898 -0.8 -1.9 conserved protein of unknown function compare
PP_2341 -0.8 -1.3 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_1439 -0.8 -1.1 conserved exported protein of unknown function compare
PP_0307 -0.8 -1.8 conserved exported protein of unknown function compare
PP_1122 -0.8 -1.2 OmpA family protein compare
PP_4904 -0.8 -3.4 Flagellar motor rotation protein compare
PP_2898 -0.8 -1.1 conserved exported protein of unknown function compare
PP_2625 -0.8 -2.5 conserved exported protein of unknown function compare
PP_4376 -0.8 -4.9 flagellar filament capping protein compare
PP_5295 -0.8 -1.4 conserved protein of unknown function compare
PP_4390 -0.8 -3.0 flagellar basal-body rod protein FlgC compare
PP_3064 -0.8 -1.1 Phage tail protein compare
PP_4693 -0.8 -2.0 RNA polymerase-binding transcription factor DksA compare
PP_0855 -0.8 -1.4 conserved protein of unknown function compare
PP_4355 -0.8 -1.2 flagellar export apparatus subunit compare
PP_2023 -0.8 -2.6 Glutathione S-transferase family protein compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source Lauric acid in Pseudomonas putida KT2440

For carbon source Lauric acid across organisms