Experiment set10IT060 for Pseudomonas simiae WCS417

Compare to:

soil sample 3; outgrowth in LB

200 most important genes:

  gene name fitness t score description  
PS417_26985 -7.6 -5.3 phosphoenolpyruvate-protein phosphotransferase compare
PS417_24835 -6.7 -4.7 hypothetical protein compare
PS417_13800 -6.5 -3.8 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_13795 -6.5 -6.4 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_27865 -6.1 -3.4 LysR family transcriptional regulator compare
PS417_01710 -5.9 -4.8 histidine utilization repressor compare
PS417_14065 -5.7 -3.9 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_26240 -4.9 -2.8 N-methylproline demethylase compare
PS417_08230 -4.9 -2.5 lipopolysaccharide biosynthesis protein RfbH compare
PS417_13790 -4.8 -3.9 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_13510 -4.8 -1.4 polyketide cyclase compare
PS417_06530 -4.8 -3.1 membrane protein compare
PS417_24800 -4.7 -3.6 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_01575 -4.7 -3.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_23545 -4.6 -2.6 gamma-glutamyl kinase compare
PS417_04390 -4.6 -4.9 toluene tolerance protein compare
PS417_04380 -4.6 -2.3 ABC transporter permease compare
PS417_20635 -4.5 -1.3 ABC transporter ATP-binding protein compare
PS417_08185 -4.5 -3.1 glycosyl transferase compare
PS417_01570 -4.4 -2.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_16510 -4.4 -3.5 Clp protease ClpX compare
PS417_27300 -4.3 -1.3 cell division protein ZapA compare
PS417_21510 -4.3 -2.5 histidine kinase compare
PS417_00650 -4.3 -1.3 LysR family transcriptional regulator compare
PS417_08225 -4.3 -4.3 acetolactate synthase compare
PS417_19955 -4.3 -1.7 hypothetical protein compare
PS417_27040 -4.3 -3.1 3-phosphoglycerate dehydrogenase compare
PS417_24710 -4.2 -3.7 lipoprotein compare
PS417_08155 -4.0 -1.9 integration host factor subunit beta compare
PS417_09210 -4.0 -2.0 TetR family transcriptional regulator compare
PS417_01915 -4.0 -1.2 ATP-dependent protease ATP-binding subunit HslU compare
PS417_16005 -4.0 -2.5 ATPase compare
PS417_13820 -3.9 -4.5 UDP-glucose 6-dehydrogenase compare
PS417_20650 -3.9 -9.4 hypothetical protein compare
PS417_24745 -3.8 -2.2 gamma-glutamyl phosphate reductase compare
PS417_23995 -3.8 -1.1 preprotein translocase subunit SecG compare
PS417_16555 -3.7 -2.1 cupin compare
PS417_02895 -3.7 -2.0 precorrin-6Y C5,15-methyltransferase compare
PS417_02975 -3.6 -4.5 3-dehydroquinate dehydratase compare
PS417_08135 -3.6 -5.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_21430 -3.5 -2.8 3-oxoacyl-ACP synthase compare
PS417_01565 -3.5 -3.3 imidazole glycerol phosphate synthase compare
PS417_17215 -3.4 -4.1 peptidylprolyl isomerase compare
PS417_27815 -3.4 -1.7 hypothetical protein compare
PS417_06375 -3.4 -1.0 deoxycytidine triphosphate deaminase compare
PS417_22450 -3.4 -1.7 ATP-dependent DNA helicase RuvA compare
PS417_22780 -3.3 -4.1 XRE family transcriptional regulator compare
PS417_04385 -3.3 -3.6 organic solvent ABC transporter substrate-binding protein compare
PS417_21630 -3.3 -2.3 magnesium transporter compare
PS417_15915 -3.3 -1.3 hypothetical protein compare
PS417_27795 -3.2 -0.9 orotate phosphoribosyltransferase compare
PS417_22115 -3.2 -3.3 transcriptional regulator compare
PS417_26990 -3.2 -1.3 RNA pyrophosphohydrolase compare
PS417_02415 -3.1 -4.9 phosphoserine phosphatase compare
PS417_27800 -3.1 -4.8 exodeoxyribonuclease III compare
PS417_03310 -3.1 -7.6 carbonate dehydratase compare
PS417_22810 -3.1 -2.0 DNA base-flipping protein YbaZ compare
PS417_15480 -3.1 -2.5 ABC transporter substrate-binding protein compare
PS417_01580 -3.1 -1.2 imidazole glycerol phosphate synthase compare
PS417_08125 -3.1 -0.9 prephenate dehydratase compare
PS417_20610 -3.1 -1.2 hypothetical protein compare
PS417_00045 -3.0 -2.0 glycerol acyltransferase compare
PS417_23810 -3.0 -9.0 acetolactate synthase 3 catalytic subunit compare
PS417_23800 -3.0 -8.4 ketol-acid reductoisomerase compare
PS417_00180 -3.0 -2.5 tryptophan synthase subunit alpha compare
PS417_02990 -3.0 -3.1 hypothetical protein compare
PS417_18540 -2.9 -2.6 colicin V production CvpA compare
PS417_22690 -2.9 -4.1 phosphogluconate dehydratase compare
PS417_23770 -2.9 -1.8 exodeoxyribonuclease V subunit alpha compare
PS417_23375 -2.8 -1.7 cytochrome C oxidase compare
PS417_00355 -2.8 -2.4 metal ABC transporter permease compare
PS417_12855 -2.8 -4.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_04270 -2.7 -5.1 ribonuclease G compare
PS417_01605 -2.7 -1.6 phosphoglycerate mutase compare
PS417_16990 -2.7 -4.2 acyl-CoA dehydrogenase compare
PS417_08200 -2.7 -2.6 hypothetical protein compare
PS417_07620 -2.7 -1.9 beta-hexosaminidase compare
PS417_09085 -2.7 -1.6 hypothetical protein compare
PS417_02270 -2.7 -4.1 carbamoyltransferase compare
PS417_22565 -2.7 -0.8 formyltetrahydrofolate deformylase compare
PS417_19790 -2.7 -2.9 ATP synthase compare
PS417_21595 -2.7 -1.9 flagellar biosynthesis protein FlgN compare
PS417_21575 -2.6 -5.5 chemotaxis protein compare
PS417_25650 -2.6 -2.3 anhydro-N-acetylmuramic acid kinase compare
PS417_24615 -2.6 -1.0 hypothetical protein compare
PS417_27245 -2.6 -2.9 aminotransferase DegT compare
PS417_12120 -2.6 -5.8 IclR family transcriptional regulator compare
PS417_19650 -2.6 -4.4 chemotaxis protein CheW compare
PS417_20100 -2.6 -10.4 hypothetical protein compare
PS417_27675 -2.6 -2.8 xanthine phosphoribosyltransferase compare
PS417_21125 -2.5 -7.1 phosphoadenosine phosphosulfate reductase compare
PS417_06680 -2.5 -7.2 nuclease PIN compare
PS417_08620 -2.5 -1.0 hypothetical protein compare
PS417_04365 -2.5 -1.0 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_21000 -2.5 -2.0 CrfX protein compare
PS417_16275 -2.5 -1.6 hypothetical protein compare
PS417_15090 -2.5 -3.1 hypothetical protein compare
PS417_08170 -2.4 -6.6 capsular biosynthesis protein compare
PS417_19705 -2.4 -2.3 flagellar biosynthesis regulator FlhF compare
PS417_04415 -2.4 -5.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_05905 -2.4 -1.8 hypothetical protein compare
PS417_11770 -2.4 -1.5 pyruvate dehydrogenase compare
PS417_01630 -2.4 -1.7 hypothetical protein compare
PS417_19425 -2.4 -1.0 allantoicase compare
PS417_04420 -2.3 -6.7 histidinol dehydrogenase compare
PS417_14045 -2.3 -2.9 alkyl hydroperoxide reductase compare
PS417_23390 -2.3 -6.1 ubiquinol oxidase subunit II compare
PS417_21915 -2.3 -2.9 LysR family transcriptional regulator compare
PS417_22775 -2.3 -6.4 histidine kinase compare
PS417_11830 -2.3 -2.1 membrane protein compare
PS417_26730 -2.3 -1.0 pyrroline-5-carboxylate reductase compare
PS417_16475 -2.3 -2.1 camphor resistance protein CrcB compare
PS417_23370 -2.3 -3.2 protoheme IX farnesyltransferase compare
PS417_19690 -2.3 -5.7 histidine kinase compare
PS417_26805 -2.3 -0.9 cell division protein FtsE compare
PS417_18585 -2.3 -3.8 3-isopropylmalate dehydrogenase compare
PS417_14920 -2.3 -4.8 CoA-transferase compare
PS417_08580 -2.3 -4.1 histidine kinase compare
PS417_01620 -2.2 -2.9 preprotein translocase subunit SecB compare
PS417_15705 -2.2 -2.2 nitrate reductase compare
PS417_04375 -2.2 -2.6 ABC transporter ATP-binding protein compare
PS417_07710 -2.2 -4.0 membrane protein compare
PS417_23250 -2.2 -4.8 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_06075 -2.2 -1.4 hypothetical protein compare
PS417_04340 -2.2 -4.8 ribosome hibernation promoting factor HPF compare
PS417_13805 -2.2 -5.2 4-amino-4-deoxy-L-arabinose transferase compare
PS417_23385 -2.2 -4.3 cytochrome o ubiquinol oxidase subunit I compare
PS417_19850 -2.2 -5.8 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_21210 -2.1 -1.7 amidotransferase compare
PS417_08130 -2.1 -2.3 aspartate aminotransferase compare
PS417_08190 -2.1 -6.6 membrane protein compare
PS417_05365 -2.1 -1.9 FAD-binding protein compare
PS417_18390 -2.1 -4.8 LacI family transcriptional regulator compare
PS417_19335 -2.1 -1.9 isochorismatase compare
PS417_05815 -2.1 -3.8 recombinase RecA compare
PS417_19655 -2.1 -2.4 chemotaxis protein CheW compare
PS417_22375 -2.1 -0.9 cold-shock protein compare
PS417_20660 -2.1 -5.4 hypothetical protein compare
PS417_02510 -2.1 -4.2 ATP phosphoribosyltransferase regulatory subunit compare
PS417_24295 -2.0 -4.9 carbon starvation protein A compare
PS417_02370 -2.0 -1.4 ADP-ribose pyrophosphatase compare
PS417_05860 -2.0 -2.6 hypothetical protein compare
PS417_23025 -2.0 -6.0 murein transglycosylase compare
PS417_01560 -2.0 -2.0 imidazoleglycerol-phosphate dehydratase compare
PS417_20985 -2.0 -2.0 porin compare
PS417_16500 -2.0 -4.2 arginyl-tRNA-protein transferase compare
PS417_11670 -2.0 -2.5 multidrug transporter MATE compare
PS417_07870 -2.0 -1.6 hypothetical protein compare
PS417_25645 -2.0 -3.7 peptidase M23 compare
PS417_07140 -2.0 -3.2 peptidase M48 compare
PS417_23775 -2.0 -2.1 exodeoxyribonuclease V subunit beta compare
PS417_15885 -2.0 -1.7 GCN5 family acetyltransferase compare
PS417_00995 -2.0 -1.7 alpha/beta hydrolase compare
PS417_27870 -2.0 -2.6 ATP-dependent DNA helicase RecG compare
PS417_19600 -2.0 -1.1 exonuclease compare
PS417_17440 -2.0 -1.5 beta-lactamase compare
PS417_14935 -2.0 -2.4 transposase compare
PS417_20670 -2.0 -3.4 glycosyl transferase family 2 compare
PS417_22445 -1.9 -2.7 ATP-dependent DNA helicase RuvB compare
PS417_24290 -1.9 -2.9 hypothetical protein compare
PS417_21515 -1.9 -6.9 transcriptional regulator compare
PS417_05610 -1.9 -2.6 bacterioferritin compare
PS417_07560 -1.9 -1.4 universal stress protein UspA compare
PS417_06600 -1.9 -0.8 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_23910 -1.9 -4.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_19730 -1.9 -2.2 flagellar biosynthesis protein FliR compare
PS417_02720 -1.9 -0.8 TetR family transcriptional regulator compare
PS417_09035 -1.9 -3.0 hypothetical protein compare
PS417_26740 -1.9 -4.6 homoserine acetyltransferase compare
PS417_19675 -1.9 -2.7 chemotaxis protein CheY compare
PS417_08220 -1.9 -0.8 epimerase compare
PS417_05010 -1.9 -1.9 IclR family transcriptional regulator compare
PS417_15820 -1.8 -1.5 universal stress protein UspA compare
PS417_25840 -1.8 -7.4 SpoVR family protein compare
PS417_07985 -1.8 -1.3 AbrB family transcriptional regulator compare
PS417_02740 -1.8 -1.1 LysR family transcriptional regulator compare
PS417_25835 -1.8 -7.6 hypothetical protein compare
PS417_00175 -1.8 -0.9 CigR compare
PS417_18570 -1.8 -3.3 peptidoglycan-binding protein compare
PS417_22990 -1.8 -1.2 iron dicitrate transport regulator FecR compare
PS417_06370 -1.8 -1.3 cold-shock protein compare
PS417_07170 -1.8 -2.6 hypothetical protein compare
PS417_18235 -1.8 -2.0 nitrile hydratase compare
PS417_18530 -1.8 -3.4 O-succinylhomoserine sulfhydrylase compare
PS417_20645 -1.8 -5.7 membrane protein compare
PS417_01340 -1.8 -4.2 agmatine deiminase compare
PS417_03465 -1.8 -1.3 type III secretion protein compare
PS417_01850 -1.8 -2.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_25790 -1.8 -2.8 aminoglycoside phosphotransferase compare
PS417_17015 -1.7 -3.3 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) compare
PS417_01290 -1.7 -1.3 ADP-ribose diphosphatase compare
PS417_03260 -1.7 -1.2 5S ribosomal RNA compare
PS417_20040 -1.7 -2.6 cobyric acid synthase compare
PS417_24655 -1.7 -2.6 hypothetical protein compare
PS417_09325 -1.7 -3.7 peptidase S41 compare
PS417_08205 -1.7 -1.7 acetyltransferase compare
PS417_00535 -1.7 -2.1 Holliday junction resolvase compare
PS417_03165 -1.7 -3.6 hypothetical protein compare
PS417_25390 -1.7 -2.8 MFS transporter compare
PS417_19945 -1.7 -3.7 MarR family transcriptional regulator compare


Specific Phenotypes

For 7 genes in this experiment