Experiment set10IT059 for Pseudomonas simiae WCS417

Compare to:

soil sample 2; outgrowth in LB

200 most important genes:

  gene name fitness t score description  
PS417_18600 -7.1 -3.4 isopropylmalate isomerase compare
PS417_13800 -6.9 -3.8 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_13820 -6.8 -4.7 UDP-glucose 6-dehydrogenase compare
PS417_13795 -6.7 -7.9 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_16005 -6.4 -3.5 ATPase compare
PS417_27865 -6.3 -3.4 LysR family transcriptional regulator compare
PS417_19335 -6.2 -2.9 isochorismatase compare
PS417_14065 -6.0 -4.2 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_02280 -5.3 -2.5 GlcNAc-PI de-N-acetylase compare
PS417_02975 -5.2 -5.3 3-dehydroquinate dehydratase compare
PS417_01575 -4.9 -3.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_23545 -4.9 -2.6 gamma-glutamyl kinase compare
PS417_04380 -4.8 -2.3 ABC transporter permease compare
PS417_20635 -4.7 -1.3 ABC transporter ATP-binding protein compare
PS417_18595 -4.6 -3.1 3-isopropylmalate dehydratase compare
PS417_27040 -4.5 -3.1 3-phosphoglycerate dehydrogenase compare
PS417_24835 -4.5 -4.3 hypothetical protein compare
PS417_01915 -4.1 -1.2 ATP-dependent protease ATP-binding subunit HslU compare
PS417_21070 -4.1 -3.4 aconitate hydratase compare
PS417_04585 -4.1 -1.9 hypothetical protein compare
PS417_24745 -4.0 -2.3 gamma-glutamyl phosphate reductase compare
PS417_20985 -3.9 -2.6 porin compare
PS417_26890 -3.9 -4.6 dihydroxy-acid dehydratase compare
PS417_27800 -3.8 -5.2 exodeoxyribonuclease III compare
PS417_22520 -3.8 -2.1 histidine kinase compare
PS417_23805 -3.8 -3.8 acetolactate synthase 3 regulatory subunit compare
PS417_26770 -3.8 -2.9 tRNA (guanine-N7)-methyltransferase compare
PS417_00185 -3.7 -4.3 tryptophan synthase subunit beta compare
PS417_22690 -3.6 -4.5 phosphogluconate dehydratase compare
PS417_06375 -3.6 -1.0 deoxycytidine triphosphate deaminase compare
PS417_27245 -3.6 -3.5 aminotransferase DegT compare
PS417_08135 -3.6 -5.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_21630 -3.5 -2.4 magnesium transporter compare
PS417_25710 -3.5 -1.4 indole-3-glycerol-phosphate synthase compare
PS417_06680 -3.5 -9.2 nuclease PIN compare
PS417_24895 -3.4 -1.4 hypothetical protein compare
PS417_07620 -3.3 -1.7 beta-hexosaminidase compare
PS417_01580 -3.3 -1.2 imidazole glycerol phosphate synthase compare
PS417_13805 -3.3 -6.6 4-amino-4-deoxy-L-arabinose transferase compare
PS417_02510 -3.3 -6.3 ATP phosphoribosyltransferase regulatory subunit compare
PS417_08125 -3.3 -0.9 prephenate dehydratase compare
PS417_24710 -3.2 -4.5 lipoprotein compare
PS417_16990 -3.2 -5.4 acyl-CoA dehydrogenase compare
PS417_23810 -3.2 -8.4 acetolactate synthase 3 catalytic subunit compare
PS417_04385 -3.1 -5.6 organic solvent ABC transporter substrate-binding protein compare
PS417_00220 -3.1 -1.8 hypothetical protein compare
PS417_23800 -3.1 -8.0 ketol-acid reductoisomerase compare
PS417_01710 -3.0 -3.7 histidine utilization repressor compare
PS417_01605 -3.0 -1.7 phosphoglycerate mutase compare
PS417_24705 -3.0 -2.1 D-alanyl-D-alanine carboxypeptidase compare
PS417_03310 -3.0 -3.7 carbonate dehydratase compare
PS417_06245 -3.0 -1.7 zinc metallopeptidase RseP compare
PS417_07560 -2.9 -1.3 universal stress protein UspA compare
PS417_07170 -2.9 -4.0 hypothetical protein compare
PS417_12855 -2.9 -4.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_22775 -2.8 -7.4 histidine kinase compare
PS417_04595 -2.8 -2.2 cell division protein MraZ compare
PS417_26745 -2.8 -4.5 methionine biosynthesis protein MetW compare
PS417_04420 -2.8 -5.7 histidinol dehydrogenase compare
PS417_22565 -2.8 -0.8 formyltetrahydrofolate deformylase compare
PS417_02005 -2.8 -7.0 glutamate synthase compare
PS417_04375 -2.8 -2.7 ABC transporter ATP-binding protein compare
PS417_25720 -2.8 -6.3 anthranilate synthase component II compare
PS417_08230 -2.8 -1.6 lipopolysaccharide biosynthesis protein RfbH compare
PS417_08195 -2.7 -8.6 hypothetical protein compare
PS417_16510 -2.7 -2.0 Clp protease ClpX compare
PS417_22780 -2.7 -2.1 XRE family transcriptional regulator compare
PS417_02415 -2.7 -4.5 phosphoserine phosphatase compare
PS417_08155 -2.7 -2.1 integration host factor subunit beta compare
PS417_13790 -2.7 -2.4 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_27870 -2.7 -3.7 ATP-dependent DNA helicase RecG compare
PS417_04365 -2.6 -1.0 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_26985 -2.6 -1.6 phosphoenolpyruvate-protein phosphotransferase compare
PS417_01920 -2.5 -1.4 ATP-dependent protease subunit HslV compare
PS417_16490 -2.5 -1.6 cell division protein FtsK compare
PS417_28230 -2.5 -2.5 transcriptional regulator compare
PS417_00310 -2.5 -4.6 cysteine synthase compare
PS417_12120 -2.5 -2.4 IclR family transcriptional regulator compare
PS417_02225 -2.5 -2.7 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_01565 -2.4 -2.9 imidazole glycerol phosphate synthase compare
PS417_26730 -2.4 -1.0 pyrroline-5-carboxylate reductase compare
PS417_21210 -2.4 -2.5 amidotransferase compare
PS417_23380 -2.4 -2.0 cytochrome o ubiquinol oxidase subunit III compare
PS417_20855 -2.4 -1.3 hypothetical protein compare
PS417_23375 -2.4 -1.6 cytochrome C oxidase compare
PS417_18585 -2.4 -3.2 3-isopropylmalate dehydrogenase compare
PS417_18530 -2.4 -4.3 O-succinylhomoserine sulfhydrylase compare
PS417_01750 -2.4 -2.3 histidine ammonia-lyase compare
PS417_23250 -2.4 -6.5 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_21430 -2.3 -2.8 3-oxoacyl-ACP synthase compare
PS417_07710 -2.3 -7.0 membrane protein compare
PS417_04410 -2.3 -2.1 hypothetical protein compare
PS417_26370 -2.2 -3.7 RNA helicase compare
PS417_03560 -2.2 -1.6 GTP-binding protein compare
PS417_17945 -2.2 -0.9 hypothetical protein compare
PS417_20650 -2.2 -6.4 hypothetical protein compare
PS417_07565 -2.2 -2.0 hypothetical protein compare
PS417_01855 -2.2 -1.7 phosphoribosyl-AMP cyclohydrolase compare
PS417_16555 -2.2 -1.9 cupin compare
PS417_00045 -2.2 -1.9 glycerol acyltransferase compare
PS417_15030 -2.1 -1.2 short-chain dehydrogenase compare
PS417_13510 -2.1 -1.0 polyketide cyclase compare
PS417_04270 -2.1 -5.1 ribonuclease G compare
PS417_01560 -2.1 -2.1 imidazoleglycerol-phosphate dehydratase compare
PS417_02000 -2.1 -8.0 glutamate synthase compare
PS417_25840 -2.1 -10.4 SpoVR family protein compare
PS417_15885 -2.1 -1.4 GCN5 family acetyltransferase compare
PS417_18560 -2.1 -4.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_23110 -2.1 -4.8 2-isopropylmalate synthase compare
PS417_03815 -2.1 -2.4 DNA transporter compare
PS417_23025 -2.0 -5.9 murein transglycosylase compare
PS417_23770 -2.0 -2.1 exodeoxyribonuclease V subunit alpha compare
PS417_05815 -2.0 -3.0 recombinase RecA compare
PS417_01340 -2.0 -3.9 agmatine deiminase compare
PS417_12695 -2.0 -4.4 mannitol dehydrogenase compare
PS417_22945 -2.0 -1.6 phosphoribosylglycinamide formyltransferase compare
PS417_25725 -2.0 -8.8 anthranilate synthase component I compare
PS417_23390 -2.0 -5.6 ubiquinol oxidase subunit II compare
PS417_23370 -1.9 -2.6 protoheme IX farnesyltransferase compare
PS417_08185 -1.9 -3.2 glycosyl transferase compare
PS417_18390 -1.9 -4.4 LacI family transcriptional regulator compare
PS417_04960 -1.9 -1.3 hypothetical protein compare
PS417_17610 -1.9 -1.5 AsnC family transcriptional regulator compare
PS417_02175 -1.9 -2.3 transcriptional regulator compare
PS417_26740 -1.9 -3.9 homoserine acetyltransferase compare
PS417_21780 -1.9 -1.9 argininosuccinate lyase compare
PS417_22815 -1.8 -5.2 permease compare
PS417_13175 -1.8 -2.0 iron transporter compare
PS417_05595 -1.8 -3.0 ornithine carbamoyltransferase compare
PS417_25650 -1.8 -1.9 anhydro-N-acetylmuramic acid kinase compare
PS417_27195 -1.8 -1.0 N-acetylglutamate synthase compare
PS417_22445 -1.8 -2.9 ATP-dependent DNA helicase RuvB compare
PS417_19430 -1.8 -1.9 ureidoglycolate hydrolase compare
PS417_16520 -1.8 -1.5 cold-shock protein compare
PS417_16715 -1.8 -1.1 DoxX family protein compare
PS417_19285 -1.8 -1.4 ankyrin compare
PS417_22850 -1.8 -4.6 virulence factor family protein compare
PS417_15770 -1.8 -1.0 pyridoxine 5'-phosphate oxidase compare
PS417_17240 -1.7 -2.4 trigger factor compare
PS417_10245 -1.7 -1.3 hypothetical protein compare
PS417_19350 -1.7 -2.9 GTP cyclohydrolase compare
PS417_24155 -1.7 -2.0 ATP-binding protein compare
PS417_22630 -1.7 -1.5 hypothetical protein compare
PS417_27305 -1.7 -4.6 5-formyltetrahydrofolate cyclo-ligase compare
PS417_22175 -1.7 -1.3 amino acid transporter LysE compare
PS417_14235 -1.7 -1.9 hypothetical protein compare
PS417_21510 -1.7 -1.2 histidine kinase compare
PS417_04415 -1.7 -3.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_08205 -1.7 -2.4 acetyltransferase compare
PS417_14920 -1.7 -2.9 CoA-transferase compare
PS417_09210 -1.7 -1.3 TetR family transcriptional regulator compare
PS417_05570 -1.6 -4.1 DeoR faimly transcriptional regulator compare
PS417_17865 -1.6 -2.1 2-keto-3-deoxy-L-rhamnonate aldolase compare
PS417_26995 -1.6 -4.8 phosphoserine phosphatase compare
PS417_12205 -1.6 -4.7 hypothetical protein compare
PS417_19675 -1.6 -2.6 chemotaxis protein CheY compare
PS417_04275 -1.6 -6.6 hypothetical protein compare
PS417_25780 -1.6 -1.9 molecular chaperone DnaJ compare
PS417_04390 -1.6 -3.1 toluene tolerance protein compare
PS417_25790 -1.6 -2.4 aminoglycoside phosphotransferase compare
PS417_16560 -1.6 -1.7 GNAT family acetyltransferase compare
PS417_23910 -1.5 -3.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_16515 -1.5 -2.0 Clp protease ClpS compare
PS417_22450 -1.5 -0.9 ATP-dependent DNA helicase RuvA compare
PS417_24135 -1.5 -1.6 hypothetical protein compare
PS417_26685 -1.5 -1.6 hypothetical protein compare
PS417_17780 -1.5 -1.0 Ais protein compare
PS417_14915 -1.5 -2.0 host specificity protein compare
PS417_25835 -1.5 -4.8 hypothetical protein compare
PS417_21830 -1.5 -2.2 TetR family transcriptional regulator compare
PS417_00315 -1.5 -1.8 MFS transporter compare
PS417_08540 -1.5 -1.6 RNA helicase compare
PS417_08225 -1.5 -2.9 acetolactate synthase compare
PS417_22840 -1.5 -0.9 tRNA-Met compare
PS417_28050 -1.5 -2.2 hypothetical protein compare
PS417_23830 -1.5 -5.2 hypothetical protein compare
PS417_00180 -1.5 -2.1 tryptophan synthase subunit alpha compare
PS417_17015 -1.5 -2.8 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) compare
PS417_25645 -1.5 -2.7 peptidase M23 compare
PS417_06530 -1.4 -1.2 membrane protein compare
PS417_01285 -1.4 -1.4 haloacid dehalogenase compare
PS417_05610 -1.4 -2.5 bacterioferritin compare
PS417_01875 -1.4 -1.5 polyhydroxyalkanoic acid system protein compare
PS417_22375 -1.4 -0.7 cold-shock protein compare
PS417_26230 -1.4 -2.5 electron transfer flavoprotein subunit alpha compare
PS417_15400 -1.4 -1.2 hypothetical protein compare
PS417_12660 -1.4 -1.2 hypothetical protein compare
PS417_23385 -1.4 -2.9 cytochrome o ubiquinol oxidase subunit I compare
PS417_08580 -1.4 -3.7 histidine kinase compare
PS417_01620 -1.4 -2.0 preprotein translocase subunit SecB compare
PS417_18545 -1.4 -2.0 cell division protein compare
PS417_25830 -1.4 -5.4 serine/threonine protein kinase compare
PS417_17105 -1.4 -1.2 spore coat protein compare
PS417_04875 -1.4 -0.9 molybdenum cofactor biosynthesis protein MoaE compare
PS417_18455 -1.4 -1.5 hypothetical protein compare
PS417_21515 -1.4 -5.1 transcriptional regulator compare
PS417_04650 -1.4 -0.7 D-alanine--D-alanine ligase compare
PS417_08170 -1.4 -6.1 capsular biosynthesis protein compare
PS417_15160 -1.4 -1.9 hypothetical protein compare
PS417_00325 -1.4 -3.3 hypothetical protein compare


Specific Phenotypes

For 8 genes in this experiment