Experiment set10IT059 for Pseudomonas simiae WCS417

soil sample 2; outgrowth in LB

Group: soil
Media:
Culturing: fluoroDangl_ML3, potted plant
By: Dawn Chiniquy on 4-Apr-19

Specific Phenotypes

For 8 genes in this experiment

SEED Subsystems

Subsystem	#Specific
Conserved gene cluster possibly involved in RNA metabolism	1
Cysteine Biosynthesis	1
Methionine Biosynthesis	1
Queuosine-Archaeosine Biosynthesis	1
Thiamin biosynthesis	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Pentose and glucuronate interconversions
• Biosynthesis of steroids
• Cysteine metabolism
• Lipopolysaccharide biosynthesis
• Carotenoid biosynthesis - General
• Sulfur metabolism

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
L-cysteine biosynthesis I	2	2	1
queuosine biosynthesis I (de novo)	4	4	1
L-cysteine biosynthesis VII (from S-sulfo-L-cysteine)	4	3	1
N-3-oxalyl-L-2,3-diaminopropanoate biosynthesis	4	1	1
seleno-amino acid biosynthesis (plants)	5	3	1
queuosine biosynthesis III (queuosine salvage)	5	3	1
thiazole component of thiamine diphosphate biosynthesis I	6	4	1
D-cycloserine biosynthesis	6	1	1
thiazole component of thiamine diphosphate biosynthesis II	7	5	1
L-cysteine biosynthesis VI (reverse transsulfuration)	7	2	1
superpathway of sulfate assimilation and cysteine biosynthesis	9	9	1
superpathway of thiamine diphosphate biosynthesis I	10	8	1
superpathway of thiamine diphosphate biosynthesis II	11	9	1
superpathway of seleno-compound metabolism	19	8	1