Experiment set10IT059 for Pseudomonas putida KT2440
Decanoic acid carbon source
Group: carbon sourceMedia: MOPS minimal media_noCarbon + Decanoic acid (10 mM)
Culturing: Putida_ML5_JBEI, tube, Aerobic, at 30 (C), shaken=200 rpm
Growth: about 6.3 generations
By: Mitchell Thompson on 10/18/18
Media components: 40 mM 3-(N-morpholino)propanesulfonic acid, 4 mM Tricine, 1.32 mM Potassium phosphate dibasic, 0.01 mM Iron (II) sulfate heptahydrate, 9.5 mM Ammonium chloride, 0.276 mM Aluminum potassium sulfate dodecahydrate, 0.0005 mM Calcium chloride, 0.525 mM Magnesium chloride hexahydrate, 50 mM Sodium Chloride, 3e-09 M Ammonium heptamolybdate tetrahydrate, 4e-07 M Boric Acid, 3e-08 M Cobalt chloride hexahydrate, 1e-08 M Copper (II) sulfate pentahydrate, 8e-08 M Manganese (II) chloride tetrahydrate, 1e-08 M Zinc sulfate heptahydrate
Specific Phenotypes
For 24 genes in this experiment
For carbon source Decanoic acid in Pseudomonas putida KT2440
For carbon source Decanoic acid across organisms
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Urea cycle and metabolism of amino groups
- Arginine and proline metabolism
- Phenylalanine metabolism
- Lipopolysaccharide biosynthesis
- Benzoate degradation via CoA ligation
- Ascorbate and aldarate metabolism
- Fatty acid biosynthesis
- Fatty acid metabolism
- Ubiquinone and menaquinone biosynthesis
- Methionine metabolism
- Cysteine metabolism
- Lysine degradation
- Histidine metabolism
- Tyrosine metabolism
- Tryptophan metabolism
- Cyanoamino acid metabolism
- Nucleotide sugars metabolism
- Glycosaminoglycan degradation
- Glycerophospholipid metabolism
- Ether lipid metabolism
- Glycosphingolipid biosynthesis - ganglio series
- 1- and 2-Methylnaphthalene degradation
- Ethylbenzene degradation
- Styrene degradation
- Butanoate metabolism
- Limonene and pinene degradation
- Diterpenoid biosynthesis
- Carotenoid biosynthesis - General
- Anthocyanin biosynthesis
- Alkaloid biosynthesis I
- Alkaloid biosynthesis II
- Biosynthesis of unsaturated fatty acids
- Biosynthesis of type II polyketide backbone
- Biosynthesis of terpenoids and steroids
- Biosynthesis of plant hormones
MetaCyc Pathways
Pathways that contain genes with specific phenotypes: