| | gene | name | fitness | t score | description | |
|---|
| b3035 | tolC | -3.9 | -7.0 | outer membrane channel; specific tolerance to colicin E1; segregation of daughter chromosomes (VIMSS) | compare |
| b4201 | priB | -3.5 | -3.4 | primosomal replication protein N (NCBI) | compare |
| b3935 | priA | -2.9 | -3.5 | primosome assembly protein PriA (NCBI) | compare |
| b1493 | gadB | -2.9 | -1.5 | glutamate decarboxylase B, PLP-dependent (NCBI) | compare |
| b1830 | prc | -2.8 | -4.2 | carboxy-terminal protease for penicillin-binding protein 3 (NCBI) | compare |
| b2617 | smpA | -2.8 | -4.1 | small membrane protein A (VIMSS) | compare |
| b0053 | surA | -2.7 | -3.7 | peptidyl-prolyl cis-trans isomerase (PPIase) (NCBI) | compare |
| b3842 | rfaH | -2.7 | -6.7 | transcriptional activator RfaH (NCBI) | compare |
| b1361 | ydaW | -2.7 | -1.4 | orf, hypothetical protein (VIMSS) | compare |
| b0222 | lpcA | -2.6 | -3.0 | phosphoheptose isomerase (NCBI) | compare |
| b3792 | wzxE | -2.6 | -6.8 | O-antigen translocase (NCBI) | compare |
| b0178 | hlpA | -2.6 | -5.1 | periplasmic chaperone (NCBI) | compare |
| b2512 | yfgL | -2.4 | -6.4 | protein assembly complex, lipoprotein component (NCBI) | compare |
| b2642 | yfjW | -2.4 | -1.6 | CP4-57 prophage; predicted inner membrane protein (NCBI) | compare |
| b3621 | rfaC | -2.4 | -4.5 | ADP-heptose:LPS heptosyl transferase I (NCBI) | compare |
| b3052 | rfaE | -2.3 | -6.1 | fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (NCBI) | compare |
| b0957 | ompA | -2.3 | -4.1 | outer membrane protein A (3a;II*;G;d) (NCBI) | compare |
| b3620 | rfaF | -2.3 | -5.9 | ADP-heptose:LPS heptosyltransferase II (NCBI) | compare |
| b2571 | rseB | -2.3 | -7.8 | periplasmic negative regulator of sigmaE (NCBI) | compare |
| b0463 | acrA | -2.3 | -10.9 | multidrug efflux system (NCBI) | compare |
| b0049 | apaH | -2.2 | -2.5 | diadenosinetetraphosphatase (NCBI) | compare |
| b3163 | nlpI | -2.2 | -4.7 | hypothetical protein (NCBI) | compare |
| b4535 | yniD | -2.1 | -1.4 | predicted protein (RefSeq) | compare |
| b3619 | rfaD | -2.1 | -3.2 | ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding (NCBI) | compare |
| b0462 | acrB | -2.1 | -13.3 | multidrug efflux system protein (NCBI) | compare |
| b0623 | cspE | -2.0 | -1.7 | cold shock protein E (NCBI) | compare |
| b2285 | nuoE | -2.0 | -2.6 | NADH dehydrogenase subunit E (NCBI) | compare |
| b1831 | proQ | -1.9 | -3.7 | putative solute/DNA competence effector (NCBI) | compare |
| b2509 | xseA | -1.9 | -7.6 | exodeoxyribonuclease VII large subunit (NCBI) | conserved |
| b0014 | dnaK | -1.9 | -2.0 | molecular chaperone DnaK (NCBI) | compare |
| b1334 | fnr | -1.9 | -2.7 | DNA-binding transcriptional dual regulator, global regulator of anaerobic growth (NCBI) | compare |
| b1848 | yebG | -1.8 | -1.9 | conserved protein regulated by LexA (NCBI) | compare |
| b2620 | smpB | -1.8 | -1.7 | SsrA-binding protein (NCBI) | compare |
| b2830 | nudH | -1.8 | -1.2 | dinucleoside polyphosphate hydrolase (NCBI) | compare |
| b0990 | cspG | -1.8 | -1.6 | DNA-binding transcriptional regulator (NCBI) | compare |
| b2616 | recN | -1.8 | -8.5 | recombination and repair protein (NCBI) | conserved |
| b0149 | mrcB | -1.7 | -10.6 | penicillin-binding protein 1b (NCBI) | compare |
| b1236 | galU | -1.7 | -3.5 | glucose-1-phosphate uridylyltransferase (NCBI) | compare |
| b4702 | mgtL | -1.7 | -1.9 | regulatory leader peptide for mgtA (NCBI) | compare |
| b3609 | secB | -1.7 | -3.2 | export protein SecB (NCBI) | compare |
| b3631 | rfaG | -1.7 | -10.5 | glucosyltransferase I (NCBI) | compare |
| b3630 | rfaP | -1.6 | -7.4 | kinase that phosphorylates core heptose of lipopolysaccharide (NCBI) | compare |
| b1176 | minC | -1.6 | -2.7 | septum formation inhibitor (NCBI) | compare |
| b4655 | ythA | -1.5 | -1.7 | expressed protein (RefSeq) | compare |
| b2346 | vacJ | -1.5 | -5.5 | predicted lipoprotein (NCBI) | compare |
| b1278 | pgpB | -1.5 | -2.7 | phosphatidylglycerophosphatase B (NCBI) | compare |
| b4237 | nrdG | -1.5 | -8.5 | anaerobic ribonucleotide reductase activating protein (NCBI) | compare |
| b2892 | recJ | -1.4 | -6.9 | ssDNA exonuclease, 5' --> 3'-specific (NCBI) | compare |
| b0630 | lipB | -1.4 | -1.3 | protein of lipoate biosynthesis (VIMSS) | compare |
| b3784 | rfe | -1.3 | -9.8 | UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase (NCBI) | compare |
| b3195 | yrbF | -1.3 | -8.4 | predicted toluene transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b3082 | ygjM | -1.3 | -1.5 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3199 | yrbK | -1.3 | -2.5 | hypothetical protein (NCBI) | compare |
| b3632 | rfaQ | -1.3 | -10.4 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b0145 | dksA | -1.3 | -2.8 | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | compare |
| b2904 | gcvH | -1.3 | -2.4 | glycine cleavage system protein H (NCBI) | compare |
| b3021 | ygiT | -1.2 | -2.3 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0730 | mngR | -1.2 | -1.1 | DNA-binding transcriptional dual regulator, fatty-acyl-binding (NCBI) | compare |
| b4238 | nrdD | -1.2 | -9.5 | anaerobic ribonucleoside triphosphate reductase (NCBI) | compare |
| b4701 | sokX | -1.2 | -1.1 | sok-related sRNA, function unknown (RefSeq) | compare |
| b3194 | yrbE | -1.2 | -7.0 | predicted toluene transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b4503 | yafF | -1.2 | -0.8 | no description | compare |
| b2572 | rseA | -1.2 | -4.4 | anti-sigma factor (NCBI) | compare |
| b0740 | tolB | -1.2 | -3.2 | translocation protein TolB precursor (NCBI) | compare |
| b3261 | fis | -1.2 | -0.8 | DNA-binding protein Fis (NCBI) | compare |
| b1252 | tonB | -1.1 | -2.5 | membrane spanning protein in TonB-ExbB-ExbD complex (NCBI) | compare |
| b1348 | lar | -1.1 | -1.6 | Rac prophage; restriction alleviation protein (NCBI) | compare |
| b4613 | dinQ | -1.1 | -1.9 | Damage inducible, function unknown (RefSeq) | compare |
| b2317 | dedA | -1.1 | -3.4 | conserved inner membrane protein (NCBI) | compare |
| b4436 | ryeC | -1.1 | -1.6 | Novel sRNA, function unknown; paralogous to the other QUAD sRNA genes unknown (RefSeq) | compare |
| b0738 | tolR | -1.1 | -1.5 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b0934 | ycbM | -1.1 | -2.2 | putative transport system permease protein (VIMSS) | compare |
| b4676 | yoaK | -1.1 | -0.7 | expressed protein (RefSeq) | compare |
| b2567 | rnc | -1.1 | -0.7 | ribonuclease III (NCBI) | compare |
| b0549 | ybcO | -1.1 | -2.1 | DLP12 prophage; predicted protein (NCBI) | compare |
| b0739 | tolA | -1.1 | -1.9 | cell envelope integrity inner membrane protein TolA (NCBI) | compare |
| b4522 | yciX_1 | -1.1 | -2.0 | hypothetical protein (NCBI) | compare |
| b2252 | ais | -1.1 | -2.5 | hypothetical protein (NCBI) | compare |
| b3728 | pstS | -1.1 | -1.2 | phosphate transporter subunit (NCBI) | compare |
| b1600 | mdtJ | -1.0 | -1.3 | multidrug efflux system transporter (NCBI) | compare |
| b1105 | ycfM | -1.0 | -2.8 | predicted outer membrane lipoprotein (NCBI) | compare |
| b1728 | ydjM | -1.0 | -2.2 | predicted inner membrane protein regulated by LexA (RefSeq) | compare |
| b3870 | glnA | -1.0 | -2.1 | glutamine synthetase (NCBI) | compare |
| b4441 | glmY | -1.0 | -1.5 | sRNA activator of glmS mRNA (RefSeq) | compare |
| b3787 | rffD | -1.0 | -6.3 | UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase (NCBI) | compare |
| b2820 | recB | -1.0 | -0.7 | exonuclease V (RecBCD complex), beta subunit (NCBI) | compare |
| b3627 | rfaI | -1.0 | -5.3 | UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1,3-D-galactosyltransferase (NCBI) | compare |
| b1476 | fdnI | -1.0 | -1.0 | formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible (NCBI) | compare |
| b1847 | yebF | -1.0 | -1.5 | predicted protein (RefSeq) | compare |
| b1085 | b1085 | -1.0 | -1.6 | orf, hypothetical protein (VIMSS) | compare |
| b1863 | ruvC | -1.0 | -1.1 | Holliday junction resolvase (NCBI) | compare |
| b3193 | yrbD | -1.0 | -5.5 | predicted ABC-type organic solvent transporter (NCBI) | compare |
| b0677 | nagA | -1.0 | -3.7 | N-acetylglucosamine-6-phosphate deacetylase (NCBI) | compare |
| b0564 | appY | -1.0 | -0.9 | DLP12 prophage; DNA-binding transcriptional activator (NCBI) | compare |
| b1969 | yedW | -1.0 | -2.5 | putative 2-component transcriptional regulator (VIMSS) | compare |
| b2258 | b2258 | -1.0 | -1.2 | putative transport/receptor protein (VIMSS) | compare |
| b3443 | yrhA | -1.0 | -1.2 | orf, hypothetical protein (VIMSS) | compare |
| b1161 | ycgX | -0.9 | -0.6 | hypothetical protein (NCBI) | compare |
| b1575 | dicB | -0.9 | -1.2 | Qin prophage; cell division inhibition protein (NCBI) | compare |
| b4146 | yjeK | -0.9 | -0.9 | predicted lysine aminomutase (NCBI) | compare |
| b3026 | qseC | -0.9 | -1.6 | sensory histidine kinase in two-component regulatory system with QseB (NCBI) | compare |
| b2011 | sbcB | -0.9 | -5.1 | exonuclease I (NCBI) | compare |
| b2954 | yggV | -0.9 | -3.3 | putative deoxyribonucleotide triphosphate pyrophosphatase (NCBI) | compare |
| b1286 | rnb | -0.9 | -1.6 | exoribonuclease II (NCBI) | compare |
| b1251 | yciI | -0.9 | -2.2 | orf, hypothetical protein (VIMSS) | compare |
| b3192 | yrbC | -0.9 | -5.6 | predicted ABC-type organic solvent transporter (NCBI) | compare |
| b1503 | ydeR | -0.9 | -1.8 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b3191 | yrbB | -0.9 | -5.4 | orf, hypothetical protein (VIMSS) | compare |
| b0728 | sucC | -0.9 | -3.5 | succinyl-CoA synthetase subunit beta (NCBI) | compare |
| b1175 | minD | -0.9 | -2.9 | membrane ATPase of the MinC-MinD-MinE system (NCBI) | compare |
| b3778 | rep | -0.9 | -4.2 | DNA helicase and single-stranded DNA-dependent ATPase (NCBI) | compare |
| b2188 | yejM | -0.9 | -5.2 | predicted hydrolase, inner membrane (NCBI) | compare |
| b2822 | recC | -0.9 | -2.4 | exonuclease V (RecBCD complex), gamma chain (NCBI) | compare |
| b2174 | b2174 | -0.9 | -4.6 | orf, hypothetical protein (VIMSS) | compare |
| b2433 | b2433 | -0.9 | -1.9 | orf, hypothetical protein (VIMSS) | compare |
| b3613 | yibP | -0.8 | -1.4 | putative membrane protein (VIMSS) | compare |
| b3629 | rfaS | -0.8 | -1.5 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b0436 | tig | -0.8 | -4.5 | trigger factor (NCBI) | compare |
| b1270 | btuR | -0.8 | -2.6 | cob(I)yrinic acid a,c-diamide adenosyltransferase (NCBI) | compare |
| b4239 | treC | -0.8 | -1.2 | trehalose-6-P hydrolase (NCBI) | compare |
| b0912 | ihfB | -0.8 | -2.0 | integration host factor subunit beta (NCBI) | compare |
| b2911 | ssrS | -0.8 | -1.4 | 6S regulatory RNA (NCBI) | compare |
| b2215 | ompC | -0.8 | -4.6 | outer membrane porin protein C (NCBI) | compare |
| b3229 | sspA | -0.8 | -1.7 | stringent starvation protein A (NCBI) | compare |
| b1579 | intQ | -0.8 | -0.9 | Qin prophage; predicted defective integrase (RefSeq) | compare |
| b1855 | lpxM | -0.8 | -3.0 | lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase (NCBI) | compare |
| b2369 | evgA | -0.8 | -1.5 | DNA-binding response regulator in two-component regulatory system with EvgS (NCBI) | compare |
| b3786 | rffE | -0.8 | -6.1 | UDP-N-acetyl glucosamine-2-epimerase (NCBI) | compare |
| b3426 | glpD | -0.8 | -2.2 | sn-glycerol-3-phosphate dehydrogenase, aerobic, FAD/NAD(P)-binding (NCBI) | compare |
| b0499 | ylbH | -0.8 | -2.0 | conserved protein, rhs-like (RefSeq) | compare |
| b0784 | moaD | -0.8 | -1.9 | molybdopterin synthase, small subunit (NCBI) | compare |
| b3392 | yrfA | -0.8 | -3.3 | orf, hypothetical protein (VIMSS) | compare |
| b2531 | iscR | -0.8 | -1.0 | DNA-binding transcriptional repressor (NCBI) | compare |
| b2774 | ygcW | -0.8 | -1.8 | putative oxidoreductase (VIMSS) | compare |
| b2699 | recA | -0.8 | -0.5 | recombinase A (NCBI) | compare |
| b3839 | tatC | -0.8 | -3.8 | TatABCE protein translocation system subunit (NCBI) | compare |
| b3405 | ompR | -0.8 | -2.6 | osmolarity response regulator (NCBI) | compare |
| b0729 | sucD | -0.7 | -2.1 | succinyl-CoA synthetase subunit alpha (NCBI) | compare |
| b1536 | ydeI | -0.7 | -0.5 | hypothetical protein (NCBI) | compare |
| b2637 | yfjT | -0.7 | -2.0 | CP4-57 prophage; predicted protein (NCBI) | compare |
| b2494 | yfgC | -0.7 | -3.8 | predicted peptidase (NCBI) | compare |
| b3836 | b3836 | -0.7 | -2.0 | orf, hypothetical protein (VIMSS) | compare |
| b3626 | rfaJ | -0.7 | -1.8 | UDP-D-glucose:(galactosyl)lipopolysaccharide glucosyltransferase (NCBI) | compare |
| b1309 | ycjM | -0.7 | -1.6 | putative polysaccharide hydrolase (VIMSS) | compare |
| b3672 | ivbL | -0.7 | -2.3 | ilvB operon leader peptide (NCBI) | compare |
| b1942 | fliJ | -0.7 | -0.8 | flagellar biosynthesis chaperone (NCBI) | compare |
| b0741 | pal | -0.7 | -1.7 | peptidoglycan-associated outer membrane lipoprotein (NCBI) | compare |
| b1799 | yeaT | -0.7 | -2.2 | putative transcriptional regulator LYSR-type (VIMSS) | compare |
| b1330 | ynaI | -0.7 | -2.0 | conserved inner membrane protein (NCBI) | compare |
| b2237 | inaA | -0.7 | -2.1 | hypothetical protein (NCBI) | compare |
| b2212 | alkB | -0.7 | -2.6 | oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions (NCBI) | compare |
| b1268 | yciQ | -0.7 | -3.5 | predicted inner membrane protein (NCBI) | compare |
| b2165 | yeiN | -0.7 | -2.6 | hypothetical protein (NCBI) | compare |
| b1566 | flxA | -0.7 | -1.3 | Qin prophage; predicted protein (NCBI) | compare |
| b1070 | flgN | -0.7 | -0.8 | export chaperone for FlgK and FlgL (NCBI) | compare |
| b4698 | mgrR | -0.7 | -1.4 | sRNA antisense regulator down regulates YgdQ and EptB, PhoPQ-regulated, Hfq-dependent; affects sensitivity to antimicrobial peptides (RefSeq) | compare |
| b1860 | ruvB | -0.7 | -0.4 | Holliday junction DNA helicase B (NCBI) | compare |
| b4509 | ylcG | -0.7 | -1.1 | DLP12 prophage; predicted protein (NCBI) | compare |
| b4620 | yjbT | -0.7 | -2.8 | hypothetical protein, no homologs (RefSeq) | compare |
| b2553 | glnB | -0.6 | -2.4 | regulatory protein P-II for glutamine synthetase (NCBI) | compare |
| b3129 | sohA | -0.6 | -1.9 | predicted regulator (NCBI) | compare |
| b0460 | hha | -0.6 | -2.0 | modulator of gene expression, with H-NS (NCBI) | compare |
| b1677 | lpp | -0.6 | -1.0 | murein lipoprotein (NCBI) | compare |
| b3811 | xerC | -0.6 | -0.9 | site-specific tyrosine recombinase XerC (NCBI) | compare |
| b1123 | potD | -0.6 | -2.4 | spermidine/putrescine ABC transporter periplasmic substrate-binding protein (NCBI) | compare |
| b1670 | ydhU | -0.6 | -1.9 | predicted cytochrome (NCBI) | compare |
| b1563 | relE | -0.6 | -0.7 | Qin prophage; toxin of the RelE-RelB toxin-antitoxin system (NCBI) | compare |
| b1324 | tpx | -0.6 | -1.9 | thiol peroxidase (NCBI) | compare |
| b1754 | b1754 | -0.6 | -1.4 | orf, hypothetical protein (VIMSS) | compare |
| b1333 | uspE | -0.6 | -1.8 | stress-induced protein (NCBI) | compare |
| b1370 | insH-5 | -0.6 | -1.4 | Rac prophage; IS5 transposase and trans-activator (NCBI) | compare |
| b1512 | lsrR | -0.6 | -2.2 | lsr operon transcriptional repressor (NCBI) | compare |
| b0688 | pgm | -0.6 | -1.5 | phosphoglucomutase (NCBI) | compare |
| b1785 | yeaI | -0.6 | -1.0 | predicted diguanylate cyclase (NCBI) | compare |
| b1247 | oppF | -0.6 | -1.7 | oligopeptide transporter subunit (NCBI) | compare |
| b0357 | yaiN | -0.6 | -1.1 | putative alpha helix chain (VIMSS) | compare |
| b0764 | modB | -0.6 | -2.2 | molybdate ABC transporter permease protein (NCBI) | compare |
| b2354 | yfdK | -0.6 | -2.2 | CPS-53 (KpLE1) prophage; conserved protein (NCBI) | compare |
| b1217 | chaB | -0.6 | -0.6 | cation transport regulator (NCBI) | compare |
| b4630 | ykgP | -0.6 | -0.9 | no description | compare |
| b1109 | ndh | -0.6 | -1.7 | respiratory NADH dehydrogenase 2/cupric reductase (NCBI) | compare |
| b2005 | yeeV | -0.6 | -1.5 | CP4-44 prophage; toxin of the YeeV-YeeU toxin-antitoxin system (NCBI) | compare |
| b1192 | ldcA | -0.6 | -1.9 | L,D-carboxypeptidase A (NCBI) | compare |
| b3794 | rffM | -0.6 | -3.1 | putative UDP-N-acetyl-D-mannosaminuronic acid transferase (NCBI) | compare |
| b0877 | ybjX | -0.6 | -2.9 | hypothetical protein (NCBI) | compare |
| b3387 | dam | -0.6 | -4.0 | DNA adenine methylase (NCBI) | compare |
| b3930 | menA | -0.6 | -4.8 | 1,4-dihydroxy-2-naphthoate octaprenyltransferase (NCBI) | compare |
| b3237 | argR | -0.6 | -1.9 | arginine repressor (NCBI) | compare |
| b1604 | ydgH | -0.6 | -2.6 | hypothetical protein (NCBI) | compare |
| b1569 | dicC | -0.6 | -1.7 | Qin prophage; DNA-binding transcriptional regulator for DicB (NCBI) | compare |
| b4640 | yoeG | -0.6 | -1.0 | no description | compare |
| b1260 | trpA | -0.6 | -2.3 | tryptophan synthase subunit alpha (NCBI) | compare |
| b0618 | citC | -0.6 | -3.2 | citrate lyase synthetase (citrate (pro-3S)-lyase ligase (VIMSS) | compare |
| b0364 | yaiS | -0.6 | -1.4 | orf, hypothetical protein (VIMSS) | compare |
| b4559 | yjdO | -0.6 | -1.3 | hypothetical protein (NCBI) | compare |
| b1495 | yddB | -0.6 | -3.1 | predicted porin protein (NCBI) | compare |
| b2195 | ccmG | -0.6 | -1.0 | periplasmic thioredoxin of cytochrome c-type biogenesis (NCBI) | compare |
| b0009 | mog | -0.6 | -2.9 | molybdenum cofactor biosynthesis protein (NCBI) | compare |
| b1614 | ydgA | -0.6 | -1.6 | hypothetical protein (NCBI) | compare |
| b4614 | sokA | -0.6 | -1.4 | no description | compare |