Experiment set10IT058 for Pseudomonas putida KT2440

Compare to:

Nonanoic acid carbon source

200 most detrimental genes:

  gene name fitness t score description  
PP_1623 +2.5 12.8 RNA polymerase, sigma S (sigma 38) factor compare
PP_1224 +2.5 13.2 periplasmic subunit of the TolQRA transport system compare
PP_1898 +2.0 5.1 MotA/TolQ/ExbB proton channel family protein compare
PP_1650 +1.9 18.8 Sensor protein GacS compare
PP_4099 +1.9 18.8 two-componenent system BarA/UvrY - regulatory subunit compare
PP_4994 +1.8 5.9 conserved protein of unknown function compare
PP_1779 +1.7 7.6 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1778 +1.6 6.1 Lipopolysaccharide ABC export system, permease protein compare
PP_3449 +1.6 4.6 conserved exported protein of unknown function compare
PP_5053 +1.5 6.9 Protein-export protein SecB compare
PP_3541 +1.5 3.3 Transporter, MgtC family compare
PP_4804 +1.5 4.5 RlpA-like lipoprotein compare
PP_5003 +1.4 9.8 poly(3-hydroxyalkanoate) polymerase 1 compare
PP_3318 +1.4 3.5 conserved protein of unknown function compare
PP_1322 +1.4 1.9 putative Lipoprotein compare
PP_0406 +1.3 7.7 Nucleotidyltransferase family protein compare
PP_0547 +1.3 4.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_5145 +1.3 12.3 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_2700 +1.3 3.1 AhpC/TSA family protein compare
PP_4004 +1.2 2.3 DNA translocase FtsK compare
PP_0963 +1.2 3.2 putative BolA family protein compare
PP_4836 +1.2 3.0 conserved exported protein of unknown function compare
PP_0001 +1.2 1.4 probable chromosome-partitioning protein compare
PP_0123 +1.2 5.2 DNA polymerase I, 5 compare
PP_0593 +1.2 1.4 putative ribosome-binding factor compare
PP_3971 +1.1 2.2 conserved protein of unknown function compare
PP_t11 +1.1 1.8 tRNA-Lys compare
PP_2322 +1.1 6.7 Major outer membrane lipoprotein compare
PP_2972 +1.1 1.5 conserved protein of unknown function compare
PP_2307 +1.1 2.0 conserved protein of unknown function compare
PP_4785 +1.1 5.0 conserved exported protein of unknown function compare
PP_1834 +1.1 3.5 conserved protein of unknown function compare
PP_1096 +1.1 1.5 putative electron transport complex protein compare
PP_0003 +1.0 2.9 16S RNA methyltransferase compare
PP_0834 +1.0 1.3 Sec translocation complex subunit YajC compare
PP_1237 +1.0 1.4 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_2748 +1.0 2.0 putative Branched-chain amino acid ABC transporter, ATP-binding protein compare
PP_0852 +1.0 2.3 Transcriptional regulator, Cro/CI family compare
PP_1742 +1.0 2.5 conserved inner membrane protein of unknown function compare
PP_2147 +1.0 1.7 conserved exported protein of unknown function compare
PP_0848 +1.0 2.4 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_2320 +1.0 7.7 conserved exported protein of unknown function compare
PP_0948 +1.0 2.6 Phosphocarrier protein HPr compare
PP_1344 +1.0 1.3 conserved protein of unknown function compare
PP_0195 +1.0 2.1 conserved protein of unknown function compare
PP_1217 +1.0 2.6 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4424 +1.0 1.3 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_2793 +1.0 1.9 Acyl-CoA dehydrogenase family protein compare
PP_3094 +1.0 2.2 conserved exported protein of unknown function compare
PP_2330 +0.9 3.7 conserved protein of unknown function compare
PP_1028 +0.9 2.4 Transcriptional regulator, LysR family compare
PP_4642 +0.9 1.3 Cyclic diguanosine monophosphate-binding protein compare
PP_5229 +0.9 3.2 conserved protein of unknown function compare
PP_2299 +0.9 2.7 Trigger factor compare
PP_0540 +0.9 4.0 conserved inner membrane protein compare
PP_5701 +0.9 1.8 conserved protein of unknown function compare
PP_3245 +0.9 1.4 conserved protein of unknown function compare
PP_5058 +0.9 2.3 Carboxy-terminal-processing protease compare
PP_1113 +0.9 5.3 Pyridoxal-phosphate dependent enzyme family protein compare
PP_2526 +0.9 1.3 conserved membrane protein of unknown function compare
PP_0846 +0.9 0.9 DnaK-like molecular chaperone specific for IscU compare
PP_5241 +0.9 1.0 DNA-binding response regulator, LuxR family compare
PP_5279 +0.9 1.9 conserved protein of unknown function compare
PP_5005 +0.9 5.9 Poly(3-hydroxyalkanoate) polymerase 2 compare
PP_0801 +0.9 1.2 conserved exported protein of unknown function compare
PP_3823 +0.9 2.2 Cytochrome c-type protein compare
PP_2678 +0.9 3.3 putative Hydrolase compare
PP_4171 +0.8 5.9 conserved exported protein of unknown function compare
PP_4981 +0.8 1.7 polyisoprene-binding protein, acidic stress response factor compare
PP_1836 +0.8 1.6 putative metal transporter, ZIP family compare
PP_1054 +0.8 1.5 Type II secretion pathway protein XcpZ compare
PP_5661 +0.8 3.3 putative lipoprotein compare
PP_5140 +0.8 1.6 Transcriptional regulator, MerR family compare
PP_3808 +0.8 1.7 Antibiotic synthesis protein MbtH compare
PP_0725 +0.8 3.3 conserved hypothetical TPR repeat protein compare
PP_5198 +0.8 1.6 conserved protein of unknown function compare
PP_0276 +0.8 1.0 Transcriptional regulator, Cro/CI family compare
PP_2323 +0.8 5.0 conserved protein of unknown function compare
PP_2978 +0.8 2.5 conserved protein of unknown function compare
PP_4367 +0.8 4.7 Flagellar assembly protein FliH compare
PP_0063 +0.8 2.4 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_3227 +0.8 1.4 Transcriptional regulator, LysR family compare
PP_0856 +0.8 2.0 conserved lipoprotein of unknown function compare
PP_4961 +0.8 1.6 putative Lipoprotein compare
PP_5038 +0.8 2.8 conserved lipoprotein of unknown function compare
PP_3314 +0.8 1.6 Heat shock protein, HSP20 family compare
PP_3837 +0.8 2.0 inner membrane protein of unknown function compare
PP_1216 +0.8 1.2 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0188 +0.7 2.5 putative Uroporphyrin-III C-methyltransferase compare
PP_4009 +0.7 1.8 ATP-dependent Clp protease adapter protein ClpS compare
PP_2922 +0.7 1.8 Urea amidolyase-related protein compare
PP_1413 +0.7 3.2 Uracil-DNA glycosylase compare
PP_1647 +0.7 1.8 conserved protein of unknown function compare
PP_5393 +0.7 0.7 putative metal-binding chaperone compare
PP_0673 +0.7 1.0 conserved protein of unknown function compare
PP_1777 +0.7 4.8 phosphomannomutase compare
PP_2848 +0.7 1.6 urease accessory protein compare
PP_5073 +0.7 1.8 conserved exported protein of unknown function compare
PP_0711 +0.7 1.3 putative hydrolase compare
PP_3682 +0.7 2.3 conserved protein of unknown function compare
PP_0925 +0.7 1.9 conserved protein of unknown function compare
PP_0508 +0.7 2.0 conserved exported protein of unknown function compare
PP_3190 +0.7 2.3 Ornithine cyclodeaminase/mu-crystallin family protein compare
PP_5686 +0.7 1.2 protein of unknown function compare
PP_1503 +0.7 1.0 conserved protein of unknown function compare
PP_0440 +0.7 1.9 Elongation factor Tu-A compare
PP_0832 +0.7 1.6 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_0145 +0.7 3.0 Na+/Pi-cotransporter compare
PP_3806 +0.7 2.3 Hydrolase, isochorismatase family compare
PP_0839 +0.7 0.9 tRNA Cm32/Um32 methyltransferase compare
PP_4478 +0.7 3.3 N-succinylglutamate 5-semialdehyde dehydrogenase compare
PP_4069 +0.7 0.8 conserved protein of unknown function compare
PP_1004 +0.7 1.4 conserved protein of unknown function compare
PP_0294 +0.7 2.7 Choline / carnitine / glycine betaine ABC transporter, ATPase component (from data) compare
PP_2003 +0.7 1.7 conserved protein of unknown function compare
PP_1694 +0.7 2.4 DNA recombination limiting inversions protein compare
PP_t29 +0.7 0.9 tRNA-Ala compare
PP_3017 +0.7 1.8 O6-methylguanine-DNA methyltransferase compare
PP_1922 +0.7 1.7 conserved protein of unknown function compare
PP_4769 +0.6 2.2 conserved protein of unknown function compare
PP_3798 +0.6 2.3 conserved protein of unknown function compare
PP_t64 +0.6 1.3 tRNA-Gly compare
PP_0355 +0.6 2.7 Response regulator compare
PP_1325 +0.6 2.6 putative lipoprotein compare
PP_2196 +0.6 1.7 agmatinase compare
PP_0911 +0.6 3.2 conserved protein of unknown function compare
PP_1780 +0.6 5.2 putative mannosyltransferase compare
PP_2759 +0.6 2.7 ribose ABC transporter - ATP-binding subunit compare
PP_3359 +0.6 1.7 putative Hydroxycinnamic acid degradation regulator compare
PP_4697 +0.6 0.9 poly(A) polymerase compare
PP_1474 +0.6 2.8 conserved exported protein of unknown function compare
PP_4253 +0.6 1.5 cytochrome c oxidase subunit, cbb3-type compare
PP_4262 +0.6 1.8 Cytochrome oxidase maturation protein, cbb3-type compare
PP_1058 +0.6 4.8 conserved protein of unknown function compare
PP_4098 +0.6 0.9 UvrABC system protein C compare
PP_2729 +0.6 1.2 conserved protein of unknown function compare
PP_4803 +0.6 2.9 D-alanyl-D-alanine carboxypeptidase compare
PP_1570 +0.6 1.6 Head-tail adaptor compare
PP_5152 +0.6 2.5 conserved exported protein of unknown function compare
PP_1845 +0.6 1.3 Enoyl-CoA hydratase/isomerase family protein compare
PP_1576 +0.6 2.5 putative Immunity protein compare
PP_1862 +0.6 1.1 conserved membrane protein of unknown function compare
PP_4892 +0.6 2.2 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4910 +0.6 0.6 conserved protein of unknown function compare
PP_0211 +0.6 1.7 conserved protein of unknown function compare
PP_5609 +0.6 1.7 conserved protein of unknown function compare
PP_3378 +0.6 1.2 putative 2-ketogluconokinase compare
PP_2547 +0.6 1.4 Transcriptional regulator, LysR family compare
PP_2931 +0.6 1.7 conserved protein of unknown function compare
PP_2409 +0.6 1.6 cobalt-zinc-cadmium resistance protein compare
PP_0333 +0.6 2.1 conserved exported protein of unknown function compare
PP_0796 +0.6 3.0 conserved protein of unknown function compare
PP_0345 +0.6 1.4 putative Heptose kinase WapP compare
PP_4817 +0.6 2.2 MaoC domain protein compare
PP_5684 +0.6 2.2 protein of unknown function compare
PP_2568 +0.6 0.6 Ring-cleaving dioxygenase compare
PP_2976 +0.6 0.5 putative transposase compare
PP_3876 +0.6 0.8 conserved protein of unknown function compare
PP_3643 +0.6 1.0 putative Oxidoreductase compare
PP_4156 +0.6 0.7 Transcriptional regulator, LysR family compare
PP_1008 +0.6 0.8 RNA polymerase subunit sigma-24 compare
PP_2695 +0.6 1.0 Transcriptional regulator, LysR family compare
PP_1706 +0.6 2.4 Nitrite reductase compare
PP_1476 +0.6 2.0 conserved protein of unknown function compare
PP_4949 +0.6 2.0 putative peptidase, TldD/PmbA family compare
PP_5309 +0.6 0.4 oxidative and nitrosative stress transcriptional dual regulator compare
PP_1646 +0.6 1.5 putative Thioredoxin compare
PP_4955 +0.6 3.2 conserved exported protein of unknown function compare
PP_4682 +0.6 2.5 conserved protein of unknown function containing tetratricopeptide repeat domain compare
PP_0916 +0.6 1.7 Amino acid transporter LysE compare
PP_0807 +0.6 2.2 DNA-binding transcriptional dual regulator (NO) compare
PP_1190 +0.6 0.9 conserved protein of unknown function compare
PP_2425 +0.6 2.0 putative transcriptional regulator, AraC family compare
PP_4452 +0.6 1.9 NAD/NADP octopine/nopaline dehydrogenase family protein compare
PP_1089 +0.5 2.4 conserved protein of unknown function compare
PP_5514 +0.5 1.5 conserved protein of unknown function compare
PP_4361 +0.5 1.6 Flagellar hook-length control protein FliK compare
PP_2760 +0.5 1.4 putative ribose transport permease protein compare
PP_3217 +0.5 2.8 putative Periplasmic aliphatic sulfonate-binding protein compare
PP_4058 +0.5 3.1 1,4-alpha-glucan branching enzyme compare
PP_3204 +0.5 1.5 conserved protein of unknown function compare
PP_1055 +0.5 0.7 Type II secretion pathway protein GspN compare
PP_4005 +0.5 1.8 Leucyl/phenylalanyl-tRNA--protein transferase compare
PP_1981 +0.5 1.5 tRNA-dihydrouridine synthase C compare
PP_3283 +0.5 2.5 1,2-epoxyphenylacetyl-CoA isomerase compare
PP_4648 +0.5 2.2 Ribosomal RNA large subunit methyltransferase G compare
PP_5221 +0.5 1.9 conserved protein of unknown function, UPF0178 family compare
PP_0936 +0.5 1.7 septum formation protein compare
PP_2615 +0.5 1.5 hemolysin-coregulated protein compare
PP_2140 +0.5 1.4 conserved protein of unknown function compare
PP_1112 +0.5 3.0 conserved membrane protein of unknown function compare
PP_2384 +0.5 2.3 conserved membrane protein of unknown function compare
PP_1563 +0.5 3.4 putative Phage terminase, large subunit compare
PP_2611 +0.5 1.8 membrane protein of unknown function compare
PP_0827 +0.5 1.5 putative phosphonate transport system permease protein PtxC compare
PP_1938 +0.5 1.0 conserved protein of unknown function compare
PP_1651 +0.5 2.4 two-component response regulator compare
PP_1799 +0.5 3.7 GDP-mannose 4,6-dehydratase compare
PP_2144 +0.5 1.9 Transcriptional regulator, TetR family compare
PP_0246 +0.5 1.0 two-component system DNA-binding response transcriptional dual regulator compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Nonanoic acid in Pseudomonas putida KT2440

For carbon source Nonanoic acid across organisms