Experiment set10IT058 for Agrobacterium fabrum C58

Compare to:

DL-glyceraldehyde carbon source

200 most detrimental genes:

  gene name fitness t score description  
Atu4530 +2.6 10.4 TetR family transcriptional regulator compare
Atu3468 +1.2 1.6 hypothetical protein compare
Atu4897 +1.1 2.1 hypothetical protein compare
Atu1847 +0.9 2.8 hypothetical protein compare
Atu0925 +0.9 2.1 hypothetical protein compare
Atu3001 +0.9 2.1 hypothetical protein compare
Atu0319 +0.8 1.8 ubiquinone biosynthesis protein compare
Atu4532 +0.8 3.0 shikimate 5-dehydrogenase compare
Atu4162 +0.8 5.0 two-component response regulator compare
Atu0953 +0.8 0.8 hypothetical protein compare
Atu1241 +0.7 2.4 hypothetical protein compare
Atu1204 +0.7 4.0 potassium uptake protein compare
Atu3031 +0.7 1.4 hypothetical protein compare
Atu0551 +0.7 2.5 flagellar protein FLGA precursor compare
Atu0535 +0.6 3.0 hypothetical protein compare
Atu1333 +0.6 2.6 outer membrane protein compare
Atu4896 +0.6 1.3 acetyltransferase compare
Atu0926 +0.6 3.2 hypothetical protein compare
Atu0931 +0.6 4.7 penicillin binding protein compare
Atu4743 +0.6 3.5 LacI family transcriptional regulator compare
Atu0074 +0.6 4.7 molybdopterin biosynthesis protein compare
Atu1127 +0.6 1.6 molybdopterin converting factor small subunit compare
Atu0525 +0.6 2.8 transcriptional regulator, LuxR family compare
Atu1695 +0.6 4.4 molybdenum cofactor biosynthesis protein A compare
Atu1689 +0.6 3.8 molybdenum cofactor biosynthesis protein C compare
Atu0577 +0.6 2.5 FLAF protein compare
Atu0631 +0.6 3.1 molybdenum cofactor biosynthesis protein B compare
Atu0225 +0.6 0.8 hypothetical protein compare
Atu3780 +0.6 3.1 hypothetical protein compare
Atu4890 +0.6 1.3 IS426 transposase compare
Atu0665 +0.6 4.0 glycolate oxidase subunit compare
Atu2015 +0.6 4.4 aminotransferase compare
Atu0141 +0.5 1.2 cytochrome O ubiquinol oxidase subunit I compare
Atu0524 +0.5 3.8 transcriptional regulator, LuxR family compare
Atu1177 +0.5 2.7 hypothetical protein compare
Atu4894 +0.5 2.9 transposase compare
Atu1690 +0.5 3.7 molybdopterin biosynthesis protein compare
Atu2649 +0.5 2.1 hypothetical protein compare
Atu1968 +0.5 1.3 hypothetical protein compare
Atu1449 +0.5 2.9 potassium uptake protein compare
Atu3697 +0.5 1.8 ATP-dependent protease LA 2 compare
Atu2169 +0.5 2.7 hypothetical protein compare
Atu3807 +0.5 1.9 AsnC family transcriptional regulator compare
Atu0479 +0.5 2.7 ABC transporter, substrate binding protein (amino acid) compare
Atu1698 +0.5 3.0 molybdopterin-guanine dinucleotide biosynthesis protein A compare
Atu4406 +0.5 1.6 periplasmic nitrate reductase, ferredoxin-like protein compare
Atu0135 +0.5 0.8 uracil phosphoribosyltransferase compare
Atu1865 +0.5 2.2 hypothetical protein compare
Atu1126 +0.5 3.6 molybdopterin converting factor, large subunit compare
Atu2276 +0.5 2.7 ABC transporter, substrate binding protein (branched chain amino acid) compare
Atu2041 +0.5 1.7 acetyltransferase compare
Atu0553 +0.5 2.6 flagellar hook-basal body complex protein compare
Atu2193 +0.5 0.8 hypothetical protein compare
Atu4061 +0.5 1.9 exopolysaccharide production repressor protein compare
Atu1223 +0.5 0.8 hypothetical protein compare
Atu2282 +0.4 2.6 thymidine kinase compare
Atu8130 +0.4 3.4 hypothetical protein compare
Atu0667 +0.4 3.8 glycolate oxidase iron-sulfur subunit compare
Atu0791 +0.4 3.2 transcriptional regulator, GntR family compare
Atu4824 +0.4 2.5 IclR family transcriptional regulator compare
Atu2114 +0.4 1.7 molecular chaperone, DnaJ family compare
Atu1858 +0.4 1.6 hypothetical protein compare
Atu8046 +0.4 1.3 hypothetical protein compare
Atu0666 +0.4 2.4 glycolate oxidase subunit compare
Atu4266 +0.4 2.7 GntR family transcriptional regulator compare
Atu8149 +0.4 2.4 hypothetical protein compare
Atu2271 +0.4 1.9 urease accessory protein compare
Atu3506 +0.4 1.9 hypothetical protein compare
Atu4543 +0.4 1.7 LysR family transcriptional regulator compare
Atu4144 +0.4 0.6 hypothetical protein compare
Atu2489 +0.4 2.3 hypothetical protein compare
Atu5169 +0.4 1.6 type IV secretion protein AvhB8 compare
Atu0435 +0.4 1.2 tRNA-Gly compare
Atu3647 +0.4 1.3 hypothetical protein compare
Atu6153 +0.4 1.8 conserved hypothetical protein compare
Atu0559 +0.4 2.0 hypothetical protein compare
Atu0785 +0.4 1.6 ribosomal-protein (S5)-alanine N-acetyltransferase compare
Atu0630 +0.4 1.4 hypothetical protein compare
Atu1694 +0.4 0.9 hypothetical protein compare
Atu8176 +0.4 1.1 hypothetical protein compare
Atu8054 +0.4 0.6 hypothetical protein compare
Atu4323 +0.4 2.0 ribitol 2-dehydrogenase compare
Atu8169 +0.4 2.0 hypothetical protein compare
Atu3632 +0.4 1.7 hypothetical protein compare
Atu5057 +0.4 0.8 hypothetical protein compare
Atu3160 +0.4 0.8 hypothetical protein compare
Atu0780 +0.4 2.5 hypothetical protein compare
Atu2433 +0.4 0.7 hypothetical protein compare
Atu8055 +0.4 1.6 hypothetical protein compare
Atu0193 +0.4 1.5 glutamine synthetase compare
Atu0249 +0.4 2.8 ABC transporter, substrate binding protein (sugar) compare
Atu2619 +0.4 2.8 NAD-dependent formate dehydrogenase, C subunit protein compare
Atu1628 +0.4 1.2 hypothetical protein compare
Atu1973 +0.4 2.2 hypothetical protein compare
Atu5034 +0.4 1.1 hypothetical protein compare
Atu8202 +0.4 1.5 hypothetical protein compare
Atu3523 +0.4 2.1 polysaccharide biosynthesis-like protein compare
Atu3254 +0.4 2.1 dicarboxylate ABC transporter ATPase compare
Atu4641 +0.4 1.3 LysR family transcriptional regulator compare
Atu8150 +0.4 1.5 hypothetical protein compare
Atu0769 +0.4 0.9 protoheme IX farnesyltransferase compare
Atu2044 +0.4 2.2 HFLC protein compare
Atu0917 +0.4 2.2 hypothetical protein compare
Atu1483 +0.4 1.5 cytochrome b561 compare
Atu0924 +0.4 1.2 hypothetical protein compare
Atu2384 +0.4 1.3 transcriptional regulator, TetR family compare
Atu4290 +0.4 1.0 hypothetical protein compare
Atu8144 +0.4 1.5 hypothetical protein compare
Atu0523 +0.4 2.8 flagellar M-ring protein compare
Atu3705 +0.4 1.2 hypothetical protein compare
Atu3183 +0.4 0.5 hypothetical protein compare
Atu0031 +0.4 0.7 PTS system, IIA component compare
Atu5449 +0.4 1.8 heat-shock protein compare
Atu5517 +0.4 1.0 hypothetical protein compare
Atu3329 +0.4 2.4 beta alanine--pyruvate transaminase compare
Atu4407 +0.4 1.2 periplasmic nitrate reductase, NapD protein compare
Atu1855 +0.4 2.0 MFS permease compare
Atu3728 +0.4 2.2 hypothetical protein compare
Atu0063 +0.4 1.8 ABC transporter, substrate binding protein (sugar) compare
Atu3006 +0.4 1.2 hypothetical protein compare
Atu2561 +0.4 1.8 ABC transporter, substrate binding protein (molybdate) compare
Atu3467 +0.4 0.8 hypothetical protein compare
Atu0556 +0.3 1.4 hypothetical protein compare
Atu0495 +0.3 1.7 hypothetical protein compare
Atu0564 +0.3 2.7 flagellar biosynthetic protein compare
Atu1032 +0.3 1.6 hypothetical protein compare
Atu0733 +0.3 2.0 enoyl-CoA hydratase/isomerase compare
Atu3767 +0.3 1.4 diguanylate cyclase compare
Atu1264 +0.3 1.1 hypothetical protein compare
Atu2073 +0.3 1.7 membrane protein compare
Atu1699 +0.3 1.1 molybdopterin-guanine dinucleotide biosynthesis protein B compare
Atu1846 +0.3 0.9 hypothetical protein compare
Atu4527 +0.3 0.8 hypothetical protein compare
Atu1500 +0.3 1.4 rare lipoprotein A compare
Atu3631 +0.3 2.0 hypothetical protein compare
Atu2259 +0.3 1.1 MFS permease compare
Atu0533 +0.3 1.5 putative inhibitor of septum formation compare
Atu2475 +0.3 1.3 ABC transporter, membrane spanning protein compare
Atu0332 +0.3 2.4 RNA polymerase sigma-54 factor compare
Atu1301 +0.3 1.7 hypothetical protein compare
Atu2680 +0.3 1.8 ABC transporter, nucleotide binding/ATPase protein compare
Atu2324 +0.3 1.6 ureidoglycolate hydrolase compare
Atu2042 +0.3 1.9 short chain dehydrogenase compare
Atu8153 +0.3 1.8 hypothetical protein compare
Atu3886 +0.3 2.4 lysophospholipase compare
Atu2391 +0.3 1.7 ABC transporter, substrate binding protein (nitrate/sulfonate/taurine/bicarbonate) compare
Atu8163 +0.3 1.8 hypothetical protein compare
Atu3315 +0.3 1.5 UDP-glucose 4-epimerase compare
Atu0755 +0.3 0.7 hypothetical protein compare
Atu6138 +0.3 1.9 Repressor of the acc and arc operons compare
Atu1549 +0.3 1.3 hypothetical protein compare
Atu1871 +0.3 1.6 glutathione S-transferase compare
Atu3301 +0.3 2.2 short-chain alcohol dehydrogenase compare
Atu2145 +0.3 2.1 transcriptional regulator, RpiR family compare
Atu4213 +0.3 1.3 hypothetical protein compare
Atu2172 +0.3 2.2 multidrug efflux protein compare
Atu1888 +0.3 2.5 two component sensor kinase compare
Atu4076 +0.3 2.3 glucose-1-phosphate adenylyltransferase compare
Atu4171 +0.3 1.9 cold-shock dead-box protein A compare
Atu1176 +0.3 1.4 hypothetical protein compare
Atu3067 +0.3 1.9 hypothetical protein compare
Atu8155 +0.3 1.0 hypothetical protein compare
Atu1336 +0.3 1.3 hypothetical protein compare
Atu4893 +0.3 1.5 hypothetical protein compare
Atu0467 +0.3 1.7 hypothetical protein compare
Atu4825 +0.3 2.0 dehydrogenase compare
Atu3030 +0.3 1.4 hypothetical protein compare
Atu3387 +0.3 0.9 sigma factor compare
Atu0725 +0.3 1.5 hypothetical protein compare
Atu1748 +0.3 2.2 NIFU-like protein compare
Atu2450 +0.3 1.1 hypothetical protein compare
Atu5010 +0.3 1.0 hypothetical protein compare
Atu1466 +0.3 0.9 hypothetical protein compare
Atu3193 +0.3 1.7 MarR family transcriptional regulator compare
Atu5164 +0.3 0.5 type IV secretion protein AvhB3 compare
Atu8056 +0.3 0.5 hypothetical protein compare
Atu1499 +0.3 2.1 penicillin binding protein compare
Atu0894 +0.3 0.8 ABC transporter, membrane spanning protein compare
Atu0681 +0.3 1.7 hypothetical protein compare
Atu2059 +0.3 2.0 transcriptional regulator, TetR family compare
Atu4414 +0.3 2.1 bacteriocin ABC transporter permease compare
Atu4677 +0.3 0.4 hypothetical protein compare
Atu4033 +0.3 2.1 sugar ABC transporter substrate-binding protein compare
Atu4630 +0.3 0.7 hypothetical protein compare
Atu1607 +0.3 1.4 DNA repair protein compare
Atu5437 +0.3 1.5 hypothetical protein compare
Atu1886 +0.3 1.9 hypothetical protein compare
Atu2013 +0.3 1.4 ABC transporter, membrane spanning protein compare
Atu1230 +0.3 1.7 hypothetical protein compare
Atu0809 +0.3 0.7 hypothetical protein compare
Atu5528 +0.3 2.4 two component sensor kinase compare
Atu0142 +0.3 0.7 cytochrome o ubiquinol oxidase subunit II compare
Atu3455 +0.3 2.1 oligopeptide ABC transporter substrate-binding protein compare
Atu1052 +0.3 0.9 hypothetical protein compare
Atu3751 +0.3 2.2 hypothetical protein compare
Atu0836 +0.3 0.8 Glutathione-S-transferase compare
Atu4419 +0.3 1.8 LysR family transcriptional regulator compare
Atu1570 +0.3 0.4 hypothetical protein compare
Atu1910 +0.3 1.9 hypothetical protein compare
Atu0738 +0.3 2.0 chemotaxis methyl-accepting protein compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source DL-glyceraldehyde in Agrobacterium fabrum C58

For carbon source DL-glyceraldehyde across organisms