Experiment set10IT057 for Pseudomonas putida KT2440

Compare to:

Octanoic acid carbon source

200 most detrimental genes:

  gene name fitness t score description  
PP_1623 +2.5 16.4 RNA polymerase, sigma S (sigma 38) factor compare
PP_1778 +2.3 11.8 Lipopolysaccharide ABC export system, permease protein compare
PP_1779 +2.2 10.2 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_4099 +1.8 17.3 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1650 +1.7 16.8 Sensor protein GacS compare
PP_0547 +1.7 9.0 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_5053 +1.6 7.2 Protein-export protein SecB compare
PP_2568 +1.6 2.3 Ring-cleaving dioxygenase compare
PP_4994 +1.6 6.5 conserved protein of unknown function compare
PP_4004 +1.5 5.7 DNA translocase FtsK compare
PP_0948 +1.5 5.3 Phosphocarrier protein HPr compare
PP_1269 +1.5 2.1 Universal stress protein family compare
PP_1898 +1.4 4.1 MotA/TolQ/ExbB proton channel family protein compare
PP_1215 +1.4 1.9 Crossover junction endodeoxyribonuclease RuvC compare
PP_1224 +1.4 7.5 periplasmic subunit of the TolQRA transport system compare
PP_0406 +1.4 8.5 Nucleotidyltransferase family protein compare
PP_1999 +1.3 4.4 membrane protein required for colicin V production compare
PP_5310 +1.3 5.1 junction-specific ATP-dependent DNA helicase compare
PP_0585 +1.3 4.7 putative metal-sensitive transcriptional regulator, MerR family compare
PP_0566 +1.3 1.9 translation-related factor compare
PP_2999 +1.2 1.7 Glyoxalase family protein compare
PP_2972 +1.2 2.4 conserved protein of unknown function compare
PP_5706 +1.2 2.8 Sec translocation complex - SecG subunit compare
PP_5145 +1.2 11.1 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_4785 +1.2 6.8 conserved exported protein of unknown function compare
PP_5003 +1.1 7.0 poly(3-hydroxyalkanoate) polymerase 1 compare
PP_4133 +1.1 2.1 Transcriptional regulator-related protein compare
PP_4254 +1.1 2.5 conserved protein of unknown function compare
PP_2499 +1.1 1.0 conserved protein of unknown function compare
PP_2655 +1.0 2.6 conserved protein of unknown function compare
PP_4940 +1.0 5.6 Putative glycosyltransferase compare
PP_1217 +1.0 3.0 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_0123 +1.0 5.6 DNA polymerase I, 5 compare
PP_3643 +1.0 2.2 putative Oxidoreductase compare
PP_4660 +1.0 4.2 Transcriptional regulator, LysR family compare
PP_4701 +1.0 1.4 glucose-6-phosphate isomerase compare
PP_2307 +1.0 2.2 conserved protein of unknown function compare
PP_1584 +1.0 4.9 conserved protein of unknown function compare
PP_1799 +1.0 8.3 GDP-mannose 4,6-dehydratase compare
PP_3810 +1.0 2.1 conserved protein of unknown function compare
PP_2387 +1.0 3.0 conserved protein of unknown function compare
PP_1804 +1.0 7.7 Glycosyl transferase WbpL compare
PP_1776 +1.0 8.5 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_5225 +1.0 1.9 frataxin compare
PP_1780 +0.9 8.5 putative mannosyltransferase compare
PP_4136 +0.9 1.5 Transcriptional regulator, LuxR family compare
PP_2144 +0.9 3.4 Transcriptional regulator, TetR family compare
PP_2337 +0.9 2.8 aconitate isomerase compare
PP_2253 +0.9 1.3 Transcriptional regulator, GntR family compare
PP_0852 +0.9 4.1 Transcriptional regulator, Cro/CI family compare
PP_1113 +0.9 6.3 Pyridoxal-phosphate dependent enzyme family protein compare
PP_1568 +0.9 1.4 conserved protein of unknown function compare
PP_0833 +0.9 1.6 queuine tRNA-ribosyltransferase compare
PP_1058 +0.9 7.4 conserved protein of unknown function compare
PP_4171 +0.9 6.7 conserved exported protein of unknown function compare
PP_0856 +0.9 2.4 conserved lipoprotein of unknown function compare
PP_3198 +0.9 2.3 Ferredoxin, 2Fe-2S compare
PP_1787 +0.9 2.9 conserved protein of unknown function compare
PP_1777 +0.9 5.7 phosphomannomutase compare
PP_1805 +0.9 7.7 Polysaccharide biosynthesis protein compare
PP_1802 +0.8 7.2 glycosyl transferase compare
PP_5350 +0.8 2.7 Transcriptional regulator, RpiR family compare
PP_4936 +0.8 3.9 O-antigen polymerase compare
PP_3637 +0.8 1.4 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_0540 +0.8 3.9 conserved inner membrane protein compare
PP_1214 +0.8 2.3 putative transcriptional regulatory protein compare
PP_2142 +0.8 2.2 Cell division inhibitor SulA compare
PP_4058 +0.8 5.8 1,4-alpha-glucan branching enzyme compare
PP_4814 +0.8 2.3 ATP-dependent protease La domain protein compare
PP_4156 +0.8 2.1 Transcriptional regulator, LysR family compare
PP_5005 +0.8 5.3 Poly(3-hydroxyalkanoate) polymerase 2 compare
PP_4910 +0.8 1.0 conserved protein of unknown function compare
PP_1544 +0.8 1.7 conserved protein of unknown function compare
PP_1800 +0.8 5.8 Oxidoreductase Rmd compare
PP_3407 +0.8 3.7 conserved protein of unknown function compare
PP_3883 +0.8 1.0 putative Phage holin compare
PP_0035 +0.8 1.4 putative bactoprenol-linked glycose transferase compare
PP_3773 +0.8 2.5 conserved protein of unknown function compare
PP_2640 +0.7 2.1 Acetyltransferase, GNAT family compare
PP_0834 +0.7 0.8 Sec translocation complex subunit YajC compare
PP_1803 +0.7 5.4 UDP-sugar epimerase compare
PP_3924 +0.7 2.3 conserved protein of unknown function compare
PP_1801 +0.7 5.4 Glycosyl transferase WbpY compare
PP_1186 +0.7 1.5 two component system DNA-binding transcriptional dual regulator compare
PP_0191 +0.7 1.9 Transcriptional regulatory protein AlgQ compare
PP_3682 +0.7 2.3 conserved protein of unknown function compare
PP_5381 +0.7 2.7 hypothetical protein compare
PP_1322 +0.7 0.9 putative Lipoprotein compare
PP_1216 +0.7 1.1 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1344 +0.7 1.2 conserved protein of unknown function compare
PP_4938 +0.7 3.8 putative Glycosyl transferase compare
PP_5201 +0.7 1.4 conserved protein of unknown function, UPF0149 family compare
PP_2320 +0.7 6.1 conserved exported protein of unknown function compare
PP_5711 +0.7 2.2 protein of unknown function compare
PP_3638 +0.7 3.0 putative Acyl-CoA dehydrogenase compare
PP_3098 +0.7 1.0 conserved protein of unknown function compare
PP_1574 +0.7 2.5 conserved protein of unknown function compare
PP_4499 +0.7 2.8 putative maturation enzyme compare
PP_5543 +0.7 3.2 protein of unknown function compare
PP_2322 +0.7 3.8 Major outer membrane lipoprotein compare
PP_4966 +0.7 1.1 transcriptional regulator of methionine metabolism compare
PP_0673 +0.7 0.9 conserved protein of unknown function compare
PP_4997 +0.7 1.5 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_2147 +0.7 1.1 conserved exported protein of unknown function compare
PP_0206 +0.7 2.4 Ferredoxin, 4Fe-4S compare
PP_4094 +0.7 2.0 conserved protein of unknown function compare
PP_0725 +0.6 2.5 conserved hypothetical TPR repeat protein compare
PP_3245 +0.6 0.6 conserved protein of unknown function compare
PP_4892 +0.6 3.1 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_2409 +0.6 1.7 cobalt-zinc-cadmium resistance protein compare
PP_1187 +0.6 3.4 sensor protein compare
PP_4683 +0.6 4.8 transglycosylase/transpeptidase compare
PP_5600 +0.6 1.1 conserved protein of unknown function compare
PP_0065 +0.6 0.9 NAD-binding component of TrK potassium transporter compare
PP_1428 +0.6 0.7 Sigma factor AlgU negative regulatory protein compare
PP_4804 +0.6 2.6 RlpA-like lipoprotein compare
PP_1548 +0.6 1.3 conserved protein of unknown function compare
PP_2280 +0.6 2.1 conserved protein of unknown function compare
PP_5001 +0.6 1.8 protease HslVU, ATPase component compare
PP_0126 +0.6 1.8 Cytochrome c4 compare
PP_2784 +0.6 1.7 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_1473 +0.6 2.0 conserved protein of unknown function compare
PP_5557 +0.6 1.7 protein of unknown function compare
PP_5004 +0.6 2.6 Poly(3-hydroxyalkanoate) depolymerase compare
PP_1565 +0.6 4.0 Phage portal protein, HK97 family compare
PP_1466 +0.6 2.2 Long-chain acyl-CoA thioester hydrolase family protein compare
PP_3362 +0.6 2.2 Transcriptional regulator, AsnC family compare
PP_3900 +0.6 2.5 hypothetical protein compare
PP_1563 +0.6 3.8 putative Phage terminase, large subunit compare
PP_4074 +0.6 1.5 conserved protein of unknown function compare
PP_4045 +0.6 2.3 conserved protein of unknown function compare
PP_1362 +0.6 1.6 pyruvate kinase II compare
PP_2793 +0.6 1.4 Acyl-CoA dehydrogenase family protein compare
PP_1581 +0.6 4.3 BNR domain protein compare
PP_2889 +0.6 1.9 putative Transmembrane regulator PrtR compare
PP_1763 +0.6 1.6 putative oxidoreductase compare
PP_0138 +0.6 3.6 conserved membrane protein of unknown function compare
PP_3798 +0.6 2.4 conserved protein of unknown function compare
PP_2497 +0.6 1.2 conserved protein of unknown function compare
PP_2171 +0.6 1.9 Transporter, LysE family compare
PP_1535 +0.6 2.0 putative Methyltransferase compare
PP_4870 +0.6 1.6 Azurin compare
PP_2098 +0.6 3.2 D-alanyl-D-alanine carboxypeptidase compare
PP_0989 +0.6 1.7 glycine cleavage system H protein 1 compare
PP_1543 +0.6 2.3 conserved protein of unknown function compare
PP_1935 +0.6 1.5 Transcriptional regulator, Cro/CI family compare
PP_0925 +0.5 2.3 conserved protein of unknown function compare
PP_3891 +0.5 1.2 conserved protein of unknown function compare
PP_2319 +0.5 2.7 conserved protein of unknown function compare
PP_2333 +0.5 2.0 GntR family transcriptional regulator compare
PP_5451 +0.5 2.2 protein of unknown function compare
PP_3738 +0.5 1.3 putative Transcriptional regulator VanR compare
PP_5667 +0.5 1.9 putative microcin B17-like-processing protein, McbC family compare
PP_1556 +0.5 1.9 conserved protein of unknown function compare
PP_5058 +0.5 2.0 Carboxy-terminal-processing protease compare
PP_4891 +0.5 2.2 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1567 +0.5 3.2 Capsid protein compare
PP_1068 +0.5 1.9 glutamate / aspartate ABC transporter - ATP binding subunit compare
PP_1582 +0.5 4.0 conserved protein of unknown function compare
PP_2682 +0.5 2.3 Fe-containing alcohol dehydrogenase compare
PP_2939 +0.5 1.7 toxin of the YefM-YoeB antitoxin/toxin complex and DNA-binding transcriptional repressor compare
PP_3594 +0.5 2.3 L-lysine and D-lysine ABC transporter, permease component 1 (from data) compare
PP_2815 +0.5 2.3 conserved protein of unknown function compare
PP_0784 +0.5 1.8 conserved protein of unknown function compare
PP_2738 +0.5 2.0 putative Transcriptional regulator compare
PP_1294 +0.5 1.6 molybdopterin synthase large subunit compare
PP_1562 +0.5 0.6 putative Phage terminase, small subunit compare
PP_5598 +0.5 1.5 conserved protein of unknown function compare
PP_1564 +0.5 2.0 conserved exported protein of unknown function compare
PP_5309 +0.5 0.3 oxidative and nitrosative stress transcriptional dual regulator compare
PP_3916 +0.5 1.1 conserved protein of unknown function compare
PP_2716 +0.5 2.0 arsenate reductase compare
PP_1833 +0.5 1.8 conserved protein of unknown function compare
PP_3035 +0.5 0.9 conserved protein of unknown function compare
PP_4577 +0.5 1.9 UPF0271 protein PP_4577 compare
PP_2073 +0.5 1.0 Acetyltransferase, GNAT family compare
PP_0339 +0.5 1.7 Pyruvate dehydrogenase E1 component compare
PP_1185 +0.5 2.0 Outer membrane protein H1 compare
PP_3760 +0.5 2.2 putative methyltransferase compare
PP_2900 +0.5 1.4 conserved protein of unknown function compare
PP_1930 +0.5 1.5 arsenic resistance transcriptional regulator compare
PP_5240 +0.5 1.3 Response regulator compare
PP_4720 +0.5 1.3 putative RNA binding protein compare
PP_3715 +0.5 1.6 Muconate cycloisomerase 1 compare
PP_3866 +0.5 2.2 conserved protein of unknown function compare
PP_2131 +0.5 1.9 DNA-binding ATPase involved in replication compare
PP_2777 +0.5 2.0 putative Acyl carrier protein compare
PP_0195 +0.5 1.3 conserved protein of unknown function compare
PP_1573 +0.5 2.1 putative Major tail protein compare
PP_1580 +0.5 2.9 conserved protein of unknown function compare
PP_3989 +0.5 1.6 DNA-cytosine methyltransferase compare
PP_1576 +0.5 1.9 putative Immunity protein compare
PP_3672 +0.5 1.8 conserved protein of unknown function compare
PP_5654 +0.5 0.7 putative phosphotriesterase compare
PP_0502 +0.5 1.7 conserved protein of unknown function compare
PP_3404 +0.5 1.7 conserved protein of unknown function compare
PP_5476 +0.5 2.8 conserved protein of unknown function compare
PP_0705 +0.5 2.8 DNA-3-methyladenine glycosylase compare
PP_5575 +0.5 0.5 conserved protein of unknown function compare
PP_4793 +0.5 1.2 conserved protein of unknown function compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Octanoic acid in Pseudomonas putida KT2440

For carbon source Octanoic acid across organisms