Experiment set10IT056 for Pseudomonas putida KT2440

Compare to:

Heptanoic acid carbon source

200 most detrimental genes:

  gene name fitness t score description  
PP_1224 +3.5 24.2 periplasmic subunit of the TolQRA transport system compare
PP_4804 +2.6 14.1 RlpA-like lipoprotein compare
PP_0406 +2.6 22.0 Nucleotidyltransferase family protein compare
PP_1623 +2.5 15.7 RNA polymerase, sigma S (sigma 38) factor compare
PP_0547 +2.4 8.9 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_1778 +2.2 12.8 Lipopolysaccharide ABC export system, permease protein compare
PP_1779 +2.1 11.5 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_0593 +1.8 3.1 putative ribosome-binding factor compare
PP_4994 +1.6 6.5 conserved protein of unknown function compare
PP_1217 +1.6 5.4 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_0063 +1.5 5.1 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_1898 +1.5 4.8 MotA/TolQ/ExbB proton channel family protein compare
PP_0719 +1.5 2.1 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_2568 +1.5 2.0 Ring-cleaving dioxygenase compare
PP_5053 +1.4 6.6 Protein-export protein SecB compare
PP_0138 +1.3 7.6 conserved membrane protein of unknown function compare
PP_1097 +1.3 2.4 Methionine--tRNA ligase compare
PP_4008 +1.3 6.2 ATP-dependent serine protease compare
PP_5054 +1.3 1.6 glutaredoxin 3 compare
PP_4785 +1.2 6.1 conserved exported protein of unknown function compare
PP_4099 +1.2 12.0 two-componenent system BarA/UvrY - regulatory subunit compare
PP_2307 +1.2 1.6 conserved protein of unknown function compare
PP_1562 +1.2 3.4 putative Phage terminase, small subunit compare
PP_1650 +1.2 11.6 Sensor protein GacS compare
PP_4561 +1.2 1.8 stress response protein compare
PP_5145 +1.2 11.2 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_1804 +1.1 7.2 Glycosyl transferase WbpL compare
PP_4004 +1.1 3.2 DNA translocase FtsK compare
PP_1216 +1.1 2.4 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4936 +1.1 4.7 O-antigen polymerase compare
PP_1215 +1.0 1.5 Crossover junction endodeoxyribonuclease RuvC compare
PP_4593 +1.0 2.0 conserved protein of unknown function compare
PP_3519 +1.0 1.8 putative Lipoprotein compare
PP_4940 +1.0 5.8 Putative glycosyltransferase compare
PP_0123 +1.0 5.1 DNA polymerase I, 5 compare
PP_2341 +1.0 1.2 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_0236 +1.0 1.6 NAD(P)H-dependent FMN reductase subunit compare
PP_0948 +1.0 3.0 Phosphocarrier protein HPr compare
PP_2320 +1.0 8.3 conserved exported protein of unknown function compare
PP_2999 +0.9 1.2 Glyoxalase family protein compare
PP_1058 +0.9 8.1 conserved protein of unknown function compare
PP_5600 +0.9 3.3 conserved protein of unknown function compare
PP_0978 +0.9 2.2 conserved protein of unknown function compare
PP_4133 +0.9 2.2 Transcriptional regulator-related protein compare
PP_5253 +0.9 2.1 Arylesterase compare
PP_4942 +0.9 1.8 conserved protein of unknown function compare
PP_1777 +0.9 5.8 phosphomannomutase compare
PP_0003 +0.9 2.9 16S RNA methyltransferase compare
PP_0683 +0.8 2.2 conserved protein of unknown function compare
PP_1568 +0.8 1.2 conserved protein of unknown function compare
PP_4817 +0.8 3.2 MaoC domain protein compare
PP_0979 +0.8 2.8 DNA polymerase III subunit chi compare
PP_3427 +0.8 2.8 Multidrug efflux RND outer membrane protein OprN compare
PP_2900 +0.8 2.2 conserved protein of unknown function compare
PP_2319 +0.8 4.8 conserved protein of unknown function compare
PP_5445 +0.8 1.7 conserved protein of unknown function compare
PP_3328 +0.8 1.3 putative Ring-cleaving dioxygenase compare
PP_2725 +0.8 2.0 Protease PfpI compare
PP_4265 +0.8 2.2 DNA-binding transcriptional dual regulator compare
PP_1503 +0.8 3.5 conserved protein of unknown function compare
PP_5582 +0.8 1.4 conserved protein of unknown function compare
PP_5644 +0.8 2.2 conserved membrane protein of unknown function compare
PP_2765 +0.8 1.6 putative Sulfonate monooxygenase MsuD compare
PP_4171 +0.8 6.2 conserved exported protein of unknown function compare
PP_1776 +0.8 6.7 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_2309 +0.8 1.1 conserved protein of unknown function compare
PP_t12 +0.8 1.1 tRNA-Thr compare
PP_2302 +0.8 2.8 DNA-binding, ATP-dependent protease compare
PP_4835 +0.8 2.1 conserved exported protein of unknown function compare
PP_3926 +0.7 1.4 short-chain dehydrogenase compare
PP_3233 +0.7 2.7 transcriptional regulator with 4Fe-4S cluster, Crp/Fnr family compare
PP_4470 +0.7 2.0 putative transcriptional regulator (Arc domain-containing) compare
PP_1780 +0.7 6.4 putative mannosyltransferase compare
PP_0852 +0.7 1.7 Transcriptional regulator, Cro/CI family compare
PP_0540 +0.7 3.8 conserved inner membrane protein compare
PP_2322 +0.7 4.4 Major outer membrane lipoprotein compare
PP_0630 +0.7 1.0 DNA gyrase inhibitor YacG compare
PP_1799 +0.7 5.7 GDP-mannose 4,6-dehydratase compare
PP_2533 +0.7 2.7 D-isomer specific 2-hydroxyacid dehydrogenase family protein compare
PP_1803 +0.7 5.6 UDP-sugar epimerase compare
PP_0834 +0.7 0.6 Sec translocation complex subunit YajC compare
PP_4199 +0.7 1.0 putative Lipoprotein compare
PP_5568 +0.7 2.3 conserved membrane protein of unknown function compare
PP_5244 +0.7 3.2 Transcriptional regulator, AraC family compare
PP_0250 +0.7 1.3 heat shock protein Hsp15 involved in ribosome recycling compare
PP_1805 +0.7 6.2 Polysaccharide biosynthesis protein compare
PP_4937 +0.7 1.9 toluene tolerance protein compare
PP_2323 +0.7 4.9 conserved protein of unknown function compare
PP_2526 +0.7 1.2 conserved membrane protein of unknown function compare
PP_1801 +0.7 4.9 Glycosyl transferase WbpY compare
PP_5545 +0.7 2.1 protein of unknown function compare
PP_1800 +0.7 4.7 Oxidoreductase Rmd compare
PP_0339 +0.7 2.2 Pyruvate dehydrogenase E1 component compare
PP_1802 +0.7 6.0 glycosyl transferase compare
PP_4941 +0.7 3.4 conserved exported protein of unknown function compare
PP_5471 +0.7 1.3 putative response regulator receiver protein compare
PP_2127 +0.7 1.7 Sensor histidine kinase compare
PP_2889 +0.7 2.3 putative Transmembrane regulator PrtR compare
PP_4166 +0.7 1.9 conserved protein of unknown function compare
PP_1062 +0.7 1.5 MutT/nudix family protein compare
PP_4054 +0.7 1.7 conserved protein of unknown function compare
PP_1454 +0.7 1.4 conserved protein of unknown function compare
PP_0435 +0.7 4.1 Peptidase, M23/M37 family compare
PP_3371 +0.6 2.6 Sensor histidine kinase compare
PP_1628 +0.6 2.0 NMN amidohydrolase compare
PP_0886 +0.6 2.3 conserved exported protein of unknown function compare
PP_0241 +0.6 1.3 Transporter compare
PP_4018 +0.6 1.6 Acetyltransferase, GNAT family compare
PP_3424 +0.6 2.4 Type II secretion pathway protein XcpS compare
PP_4701 +0.6 0.8 glucose-6-phosphate isomerase compare
PP_1563 +0.6 4.0 putative Phage terminase, large subunit compare
PP_1410 +0.6 1.0 conserved protein of unknown function compare
PP_1026 +0.6 2.3 Peptidase, M23/M37 family compare
PP_4379 +0.6 2.7 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_5575 +0.6 1.4 conserved protein of unknown function compare
PP_1113 +0.6 3.2 Pyridoxal-phosphate dependent enzyme family protein compare
PP_5453 +0.6 1.1 conserved protein of unknown function compare
PP_1775 +0.6 3.0 Metallo-beta-lactamase family protein compare
PP_5191 +0.6 2.0 conserved exported protein of unknown function compare
PP_0643 +0.6 2.2 protein of unknown function compare
PP_5624 +0.6 2.4 conserved protein of unknown function compare
PP_5003 +0.6 3.6 poly(3-hydroxyalkanoate) polymerase 1 compare
PP_4464 +0.6 3.8 Transcriptional regulator, LysR family compare
PP_4482 +0.6 2.2 Transcriptional regulator, AraC family compare
PP_1569 +0.6 2.1 conserved protein of unknown function compare
PP_5084 +0.6 3.8 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_1742 +0.6 1.0 conserved inner membrane protein of unknown function compare
PP_1621 +0.6 2.1 Protein-L-isoaspartate O-methyltransferase compare
PP_3264 +0.6 2.4 cardiolipin synthase 2 compare
PP_2820 +0.6 1.2 HTH-type transcriptional regulator nfxB compare
PP_2863 +0.6 3.0 conserved membrane protein of unknown function compare
PP_1206 +0.6 3.0 basic-amino-acid specific porin OprD compare
PP_4009 +0.6 2.4 ATP-dependent Clp protease adapter protein ClpS compare
PP_4938 +0.6 3.2 putative Glycosyl transferase compare
PP_2194 +0.6 3.1 Transcriptional regulator, LysR family compare
PP_3048 +0.6 2.0 conserved protein of unknown function compare
PP_2078 +0.6 2.4 transcriptional activator protein LysR compare
PP_3198 +0.6 1.1 Ferredoxin, 2Fe-2S compare
PP_3971 +0.6 1.2 conserved protein of unknown function compare
PP_4914 +0.6 2.3 putative phytase-like protein compare
PP_2496 +0.6 3.0 conserved protein of unknown function compare
PP_1041 +0.6 0.8 twin arginine protein export complex subunit compare
PP_5460 +0.6 2.4 conserved membrane protein of unknown function compare
PP_3245 +0.6 1.0 conserved protein of unknown function compare
PP_1045 +0.6 1.4 Type II secretion pathway protein XcpP compare
PP_4277 +0.6 2.9 Transcriptional regulator, GntR family compare
PP_1862 +0.6 1.7 conserved membrane protein of unknown function compare
PP_5508 +0.6 0.9 conserved protein of unknown function compare
PP_4631 +0.6 1.7 conserved protein of unknown function compare
PP_5058 +0.6 2.8 Carboxy-terminal-processing protease compare
PP_2923 +0.6 1.3 conserved protein of unknown function compare
PP_5005 +0.6 3.7 Poly(3-hydroxyalkanoate) polymerase 2 compare
PP_3904 +0.6 2.1 conserved protein of unknown function compare
PP_1112 +0.6 3.3 conserved membrane protein of unknown function compare
PP_5525 +0.6 1.3 conserved exported protein of unknown function compare
PP_2030 +0.6 1.4 conserved protein of unknown function compare
PP_2500 +0.6 2.0 conserved protein of unknown function compare
PP_2700 +0.6 2.0 AhpC/TSA family protein compare
PP_2103 +0.6 2.2 conserved protein of unknown function compare
PP_1322 +0.6 1.0 putative Lipoprotein compare
PP_4895 +0.6 1.3 tRNA dimethylallyltransferase compare
PP_5324 +0.6 1.6 Response regulator compare
PP_5557 +0.6 1.5 protein of unknown function compare
PP_4213 +0.6 1.3 putative dipeptidase compare
PP_0273 +0.6 1.4 conserved protein of unknown function compare
PP_5080 +0.6 2.4 type 4 pili biogenesis protein compare
PP_4803 +0.6 4.0 D-alanyl-D-alanine carboxypeptidase compare
PP_2978 +0.6 1.9 conserved protein of unknown function compare
PP_3726 +0.6 0.7 Enoyl-CoA hydratase/isomerase family protein compare
PP_4251 +0.5 2.1 cytochrome c oxidase subunit, cbb3-type compare
PP_0377 +0.5 1.4 coenzyme PQQ synthesis protein D compare
PP_5661 +0.5 1.5 putative lipoprotein compare
PP_4897 +0.5 1.7 N-acetylmuramoyl-L-alanine amidase compare
PP_1276 +0.5 2.3 conserved protein of unknown function compare
PP_2345 +0.5 1.1 conserved exported protein of unknown function compare
PP_1022 +0.5 2.3 glucose 6-phosphate-1-dehydrogenase compare
PP_3800 +0.5 1.8 conserved protein of unknown function compare
PP_5617 +0.5 1.7 conserved protein of unknown function compare
PP_1451 +0.5 1.8 conserved exported protein of unknown function compare
PP_3880 +0.5 1.0 conserved exported protein of unknown function compare
PP_3374 +0.5 2.0 conserved protein of unknown function compare
PP_1566 +0.5 1.9 Peptidase U35 compare
PP_2299 +0.5 1.8 Trigger factor compare
PP_2462 +0.5 0.9 conserved protein of unknown function compare
PP_1561 +0.5 2.0 putative Phage holin compare
PP_2510 +0.5 1.0 conserved protein of unknown function compare
PP_0204 +0.5 2.6 Transcriptional regulator, GntR family compare
PP_2575 +0.5 1.4 conserved exported protein of unknown function compare
PP_1576 +0.5 2.1 putative Immunity protein compare
PP_2939 +0.5 1.6 toxin of the YefM-YoeB antitoxin/toxin complex and DNA-binding transcriptional repressor compare
PP_5449 +0.5 1.9 conserved exported protein of unknown function compare
PP_5110 +0.5 1.7 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_2018 +0.5 2.2 adhesin-associated BNR repeat protein (from data) compare
PP_1268 +0.5 1.8 putative HtrA suppressor protein sohA compare
PP_3307 +0.5 1.2 conserved protein of unknown function compare
PP_1048 +0.5 1.3 putative protein secretion protein for export compare
PP_3089 +0.5 2.0 conserved protein of unknown function compare
PP_4308 +0.5 1.0 Transcriptional regulator, AsnC family compare
PP_2387 +0.5 1.5 conserved protein of unknown function compare
PP_3002 +0.5 1.1 shikimate dehydrogenase-related enzyme compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Heptanoic acid in Pseudomonas putida KT2440

For carbon source Heptanoic acid across organisms