Experiment set10IT055 for Pseudomonas putida KT2440

Compare to:

Hexanoic acid carbon source

200 most important genes:

  gene name fitness t score description  
PP_0293 -5.7 -3.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5659 -5.0 -5.2 protein of unknown function compare
PP_1988 -4.9 -10.9 3-isopropylmalate dehydrogenase compare
PP_4679 -4.7 -7.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1986 -4.6 -4.5 3-isopropylmalate dehydratase small subunit compare
PP_0082 -4.6 -6.2 tryptophan synthase alpha chain compare
PP_0289 -4.5 -9.1 Imidazoleglycerol-phosphate dehydratase compare
PP_5014 -4.4 -4.6 Phosphoribosyl-AMP cyclohydrolase compare
PP_0083 -4.1 -7.4 tryptophan synthase beta chain compare
PP_0292 -4.1 -4.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4909 -4.1 -9.0 phosphoserine phosphatase compare
PP_4116 -3.9 -11.1 isocitrate lyase compare
PP_0356 -3.8 -7.4 malate synthase G compare
PP_4680 -3.8 -12.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2371 -3.7 -7.8 Sulphite reductase hemoprotein, beta subunit compare
PP_4890 -3.7 -5.5 ATP phosphoribosyltransferase regulatory subunit compare
PP_0422 -3.6 -4.3 Indole-3-glycerol phosphate synthase compare
PP_1995 -3.6 -8.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4678 -3.6 -14.0 Ketol-acid reductoisomerase compare
PP_0290 -3.5 -7.1 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1088 -3.4 -10.9 Argininosuccinate synthase compare
PP_5015 -3.3 -5.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5128 -3.2 -7.1 Dihydroxy-acid dehydratase compare
PP_5185 -3.1 -6.4 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0184 -3.1 -6.8 Argininosuccinate lyase compare
PP_3999 -3.1 -8.2 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5097 -3.1 -11.1 homoserine O-acetyltransferase compare
PP_1985 -3.1 -5.7 3-isopropylmalate dehydratase large subunit compare
PP_3511 -3.1 -6.7 Branched-chain-amino-acid aminotransferase compare
PP_4700 -3.1 -2.1 pantothenate synthetase compare
PP_2001 -3.0 -9.0 O-succinylhomoserine sulfhydrylase compare
PP_0967 -3.0 -8.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0417 -3.0 -13.6 Anthranilate synthase component 1 compare
PP_0966 -2.9 -7.9 Histidinol dehydrogenase compare
PP_1025 -2.9 -10.1 2-isopropylmalate synthase compare
PP_5098 -2.9 -7.2 methionine biosynthesis protein MetW compare
PP_2168 -2.7 -8.6 Transaldolase compare
PP_1142 -2.7 -2.1 conserved protein of unknown function compare
PP_2370 -2.7 -3.2 conserved protein of unknown function compare
PP_4724 -2.7 -6.8 Carbamoyl-phosphate synthase small chain compare
PP_2328 -2.7 -5.6 Phosphoadenosine phosphosulfate reductase compare
PP_3286 -2.7 -7.0 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_2327 -2.6 -6.1 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4999 -2.5 -2.7 dihydroorotase-like protein compare
PP_4122 -2.5 -1.7 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_2868 -2.4 -6.9 Transcriptional regulator, Cro/CI family compare
PP_4699 -2.3 -4.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4549 -2.3 -9.4 long-chain-fatty-acid/CoA ligase compare
PP_0763 -2.2 -9.7 Medium-chain-fatty-acid CoA ligase compare
PP_0691 -2.2 -5.1 Glutamate 5-kinase compare
PP_2903 -2.2 -2.7 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_5095 -2.2 -1.6 pyrroline-5-carboxylate reductase compare
PP_4124 -2.2 -3.0 NADH-quinone oxidoreductase subunit G compare
PP_2433 -2.1 -3.8 conserved protein of unknown function compare
PP_1664 -2.0 -4.2 phosphoribosylglycinamide formyltransferase 1 compare
PP_0370 -2.0 -11.3 Acyl-CoA dehydrogenase family protein compare
PP_0965 -2.0 -6.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0421 -2.0 -5.1 Anthranilate phosphoribosyltransferase compare
PP_4723 -1.9 -8.0 Carbamoyl-phosphate synthase large chain compare
PP_1079 -1.8 -4.3 Ornithine carbamoyltransferase compare
PP_0420 -1.8 -7.0 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5085 -1.7 -6.3 malic enzyme B compare
PP_4120 -1.7 -3.2 NADH-quinone oxidoreductase subunit B compare
PP_5155 -1.7 -4.1 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0767 -1.7 -7.6 Transcriptional regulator, LuxR family compare
PP_4121 -1.6 -2.9 NADH-quinone oxidoreductase subunit C/D compare
PP_0787 -1.6 -4.8 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1679 -1.6 -3.3 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_4126 -1.6 -1.1 NADH-quinone oxidoreductase subunit I compare
PP_4131 -1.5 -4.6 NADH-quinone oxidoreductase subunit N compare
PP_1404 -1.5 -2.6 conserved protein of unknown function compare
PP_4129 -1.5 -1.7 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_t10 -1.4 -2.1 tRNA-Pro compare
PP_5289 -1.4 -3.9 Acetylglutamate kinase compare
PP_5508 -1.4 -1.5 conserved protein of unknown function compare
PP_1654 -1.4 -2.5 cysteine synthase B compare
PP_3755 -1.3 -4.2 3-hydroxybutyryl-CoA dehydrogenase compare
PP_3754 -1.3 -3.9 Beta-ketothiolase BktB compare
PP_0846 -1.3 -1.7 DnaK-like molecular chaperone specific for IscU compare
PP_4977 -1.3 -6.6 5,10-methylenetetrahydrofolate reductase compare
PP_4130 -1.3 -3.0 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_0585 -1.3 -2.6 putative metal-sensitive transcriptional regulator, MerR family compare
PP_0834 -1.3 -2.1 Sec translocation complex subunit YajC compare
PP_2750 -1.2 -3.2 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_5331 -1.2 -2.7 Long-chain acyl-CoA thioester hydrolase compare
PP_2137 -1.2 -1.9 beta-ketoadipyl CoA thiolase, beta component compare
PP_4792 -1.2 -2.4 conserved exported protein of unknown function compare
PP_3649 -1.2 -2.6 Transcriptional regulator, GntR family compare
PP_4342 -1.2 -2.0 flagellar synthesis regulator, putative ATPase compare
PP_4515 -1.2 -3.5 Transcriptional regulator, MarR family compare
PP_2217 -1.1 -2.3 enoyl-CoA hydratase compare
PP_2136 -1.1 -2.9 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_4726 -1.1 -2.0 Chaperone protein DnaJ compare
PP_4317 -1.1 -2.8 conserved protein of unknown function compare
PP_1231 -1.1 -4.4 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_3505 -1.1 -2.1 conserved protein of unknown function compare
PP_4532 -1.1 -2.1 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_5227 -1.1 -3.1 diaminopimelate decarboxylase compare
PP_5528 -1.0 -2.0 conserved protein of unknown function compare
PP_5201 -1.0 -2.5 conserved protein of unknown function, UPF0149 family compare
PP_3790 -1.0 -5.1 diaminopimelate epimerase compare
PP_5217 -1.0 -7.9 Polyphosphate kinase compare
PP_3539 -1.0 -1.8 putative Transcriptional regulator compare
PP_3409 -1.0 -1.9 putative Cobalamin biosynthesis protein cobE compare
PP_1783 -1.0 -0.7 dTDP-glucose pyrophosphorylase compare
PP_3043 -1.0 -2.2 conserved protein of unknown function compare
PP_0719 -1.0 -1.1 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0152 -0.9 -1.9 conserved exported protein of unknown function compare
PP_3590 -0.9 -4.2 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_5717 -0.9 -1.5 conserved protein of unknown function compare
PP_4159 -0.9 -1.4 Potassium-transporting ATPase C chain compare
PP_2403 -0.9 -0.8 Chemotaxis protein CheY compare
PP_2214 -0.9 -3.7 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_3603 -0.9 -3.3 Transcriptional regulator, GntR family compare
PP_0042 -0.9 -3.8 conserved exported protein of unknown function compare
PP_2847 -0.9 -1.7 Urease accessory protein UreJ compare
PP_4550 -0.9 -4.2 long-chain-fatty-acid/CoA ligase compare
PP_1045 -0.9 -1.3 Type II secretion pathway protein XcpP compare
PP_3892 -0.9 -1.2 conserved protein of unknown function compare
PP_4669 -0.9 -2.3 OmpA family protein compare
PP_3753 -0.9 -2.8 Transcriptional regulator, AraC family compare
PP_1678 -0.9 -2.4 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_4829 -0.9 -2.4 putative precorrin-3B synthase compare
PP_1632 -0.9 -1.8 conserved protein of unknown function compare
PP_1097 -0.9 -1.0 Methionine--tRNA ligase compare
PP_4109 -0.8 -2.1 conserved protein of unknown function compare
PP_4548 -0.8 -3.9 putative Oxidoreductase compare
PP_5552 -0.8 -1.3 conserved protein of unknown function compare
PP_3506 -0.8 -1.8 Magnesium chelatase, subunit ChII compare
PP_1364 -0.8 -4.8 conserved exported protein of unknown function compare
PP_5639 -0.8 -4.4 conserved exported protein of unknown function compare
PP_5028 -0.8 -2.0 proline iminopeptidase compare
PP_1304 -0.8 -4.2 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_4328 -0.8 -2.2 conserved protein of unknown function compare
PP_1114 -0.8 -1.5 SEC-C domain protein compare
PP_3597 -0.8 -2.4 L-lysine and D-lysine ABC transporter, ATPase component (from data) compare
PP_4271 -0.8 -0.8 conserved protein of unknown function compare
PP_4961 -0.8 -1.4 putative Lipoprotein compare
PP_4364 -0.8 -2.1 putative Anti-sigma F factor antagonist compare
PP_t12 -0.8 -0.8 tRNA-Thr compare
PP_0276 -0.8 -0.8 Transcriptional regulator, Cro/CI family compare
PP_1676 -0.8 -2.5 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_5453 -0.8 -1.0 conserved protein of unknown function compare
PP_3640 -0.8 -1.6 Transcriptional regulator, AraC family compare
PP_3766 -0.8 -1.2 Lactoylglutathione lyase compare
PP_0002 -0.8 -3.3 probable chromosome partition protein compare
PP_4826 -0.8 -2.3 Precorrin-3B C17-methyltransferase compare
PP_1439 -0.8 -1.2 conserved exported protein of unknown function compare
PP_1178 -0.8 -1.7 conserved protein of unknown function compare
PP_1317 -0.7 -3.1 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_4828 -0.7 -0.9 Precorrin-8X methylmutase compare
PP_2472 -0.7 -3.3 putative transcriptional regulator, MerR family compare
PP_1994 -0.7 -0.8 tRNA pseudouridine (38-40)synthase compare
PP_1237 -0.7 -1.2 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1609 -0.7 -1.4 conserved protein of unknown function compare
PP_0035 -0.7 -1.5 putative bactoprenol-linked glycose transferase compare
PP_5430 -0.7 -1.5 protein of unknown function compare
PP_3098 -0.7 -0.8 conserved protein of unknown function compare
PP_1860 -0.7 -2.2 Organic hydroperoxide resistance transcriptional regulator compare
PP_3930 -0.7 -1.7 conserved exported protein of unknown function compare
PP_1528 -0.7 -0.7 conserved protein of unknown function compare
PP_5393 -0.7 -0.9 putative metal-binding chaperone compare
PP_3277 -0.7 -1.9 ring 1,2-phenylacetyl-CoA epoxidase regulatory subunit compare
PP_1829 -0.7 -1.8 Hydrolase, alpha/beta fold family compare
PP_4273 -0.7 -1.0 Transcriptional regulator, MerR family compare
PP_3554 -0.7 -4.9 Acyl-CoA dehydrogenase family protein compare
PP_2324 -0.7 -4.0 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_5000 -0.7 -1.0 peptidase component of the ATP-dependent HslVU protease compare
PP_4054 -0.7 -1.3 conserved protein of unknown function compare
PP_1733 -0.7 -1.7 membrane ATPase of the MinC-MinD-MinE system compare
PP_2976 -0.7 -1.1 putative transposase compare
PP_0122 -0.7 -0.9 conserved exported protein of unknown function compare
PP_5322 -0.7 -2.7 putative metal ion transporter compare
PP_1489 -0.7 -2.2 CheW domain protein compare
PP_1518 -0.7 -2.3 conserved exported protein of unknown function compare
PP_1657 -0.7 -2.8 modified nucleoside triphosphate pyrophosphohydrolase compare
PP_1716 -0.7 -1.9 Transcriptional regulator, Cro/CI family compare
PP_5621 -0.6 -1.7 protein of unknown function compare
PP_2457 -0.6 -3.2 DNA-binding transcriptional repressor compare
PP_5091 -0.6 -3.4 conserved membrane protein of unknown function compare
PP_5267 -0.6 -0.8 putative cytochrome c5 compare
PP_4254 -0.6 -1.1 conserved protein of unknown function compare
PP_1677 -0.6 -2.1 Adenosyl-cobyric acid synthase compare
PP_1262 -0.6 -3.9 LysR family transcriptional regulator compare
PP_0957 -0.6 -1.1 D-arabinose 5-phosphate isomerase compare
PP_5035 -0.6 -2.4 Histidine utilization repressor compare
PP_2375 -0.6 -4.1 cobalamin-dependent methionine synthase compare
PP_0291 -0.6 -0.8 conserved protein of unknown function compare
PP_3509 -0.6 -1.7 Glyoxalase family protein compare
PP_1629 -0.6 -2.1 Protein RecA compare
PP_1352 -0.6 -1.5 UPF0234 protein PP_1352 compare
PP_1374 -0.6 -2.5 conserved protein of unknown function compare
PP_5724 -0.6 -2.1 conserved protein of unknown function compare
PP_2197 -0.6 -2.2 conserved exported protein of unknown function compare
PP_2497 -0.6 -1.5 conserved protein of unknown function compare
PP_2326 -0.6 -3.3 Universal stress protein compare
PP_5557 -0.6 -1.5 protein of unknown function compare
PP_1892 -0.6 -1.6 conserved protein of unknown function compare
PP_4808 -0.6 -1.4 23S rRNA m3psi1915 methyltransferase compare
PP_2016 -0.6 -1.8 conserved protein of unknown function compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source Hexanoic acid in Pseudomonas putida KT2440

For carbon source Hexanoic acid across organisms