Experiment set10IT055 for Pseudomonas putida KT2440

Compare to:

Hexanoic acid carbon source

200 most detrimental genes:

  gene name fitness t score description  
PP_4994 +4.7 30.4 conserved protein of unknown function compare
PP_1898 +4.5 24.5 MotA/TolQ/ExbB proton channel family protein compare
PP_1623 +4.2 27.9 RNA polymerase, sigma S (sigma 38) factor compare
PP_3821 +3.9 30.5 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0406 +3.8 28.4 Nucleotidyltransferase family protein compare
PP_0547 +3.7 20.2 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_1778 +3.4 17.0 Lipopolysaccharide ABC export system, permease protein compare
PP_4099 +3.3 30.4 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1779 +3.2 19.2 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1650 +3.1 30.8 Sensor protein GacS compare
PP_4940 +3.0 19.0 Putative glycosyltransferase compare
PP_1968 +3.0 20.4 TetR family transcriptional regulator compare
PP_0138 +2.9 24.9 conserved membrane protein of unknown function compare
PP_4943 +2.8 9.7 putative Glycosyl transferase compare
PP_5145 +2.6 24.5 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_5053 +2.2 8.9 Protein-export protein SecB compare
PP_2568 +1.9 3.3 Ring-cleaving dioxygenase compare
PP_0948 +1.9 7.7 Phosphocarrier protein HPr compare
PP_1804 +1.8 13.3 Glycosyl transferase WbpL compare
PP_1110 +1.7 5.1 serine acetyltransferase compare
PP_0566 +1.6 2.8 translation-related factor compare
PP_4171 +1.6 9.7 conserved exported protein of unknown function compare
PP_0177 +1.6 8.4 conserved protein of unknown function compare
PP_1912 +1.5 8.4 Phosphate acyltransferase compare
PP_0176 +1.5 11.7 putative efflux transporter compare
PP_1309 +1.5 7.2 conserved exported protein of unknown function compare
PP_1269 +1.5 2.4 Universal stress protein family compare
PP_0178 +1.5 10.8 putative efflux pump compare
PP_1776 +1.4 12.7 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_1215 +1.4 2.6 Crossover junction endodeoxyribonuclease RuvC compare
PP_1805 +1.4 12.8 Polysaccharide biosynthesis protein compare
PP_4204 +1.4 4.1 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_1799 +1.4 10.9 GDP-mannose 4,6-dehydratase compare
PP_0179 +1.3 8.6 putative efflux transporter compare
PP_1777 +1.3 8.3 phosphomannomutase compare
PP_1111 +1.3 6.8 putative Synthetase compare
PP_1468 +1.3 4.7 Tyrosine recombinase XerD compare
PP_1109 +1.3 8.9 Transcriptional regulator, GntR family compare
PP_4799 +1.3 4.1 putative Muramoyltetrapeptide carboxypeptidase compare
PP_2499 +1.3 2.2 conserved protein of unknown function compare
PP_1224 +1.3 5.8 periplasmic subunit of the TolQRA transport system compare
PP_2889 +1.3 3.3 putative Transmembrane regulator PrtR compare
PP_1800 +1.3 10.6 Oxidoreductase Rmd compare
PP_1655 +1.3 6.3 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1217 +1.2 4.7 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4910 +1.2 2.2 conserved protein of unknown function compare
PP_4936 +1.2 6.8 O-antigen polymerase compare
PP_5706 +1.2 2.5 Sec translocation complex - SecG subunit compare
PP_4696 +1.2 6.3 Nitrogen regulation protein NR(I) compare
PP_1802 +1.2 10.5 glycosyl transferase compare
PP_4874 +1.1 1.7 50S ribosomal protein L9 compare
PP_1562 +1.1 2.2 putative Phage terminase, small subunit compare
PP_4938 +1.1 6.9 putative Glycosyl transferase compare
PP_1801 +1.1 8.9 Glycosyl transferase WbpY compare
PP_4004 +1.1 3.7 DNA translocase FtsK compare
PP_0959 +1.1 1.8 phospholipid ABC transporter compare
PP_2748 +1.1 2.8 putative Branched-chain amino acid ABC transporter, ATP-binding protein compare
PP_4695 +1.1 8.4 Sensory box histidine kinase compare
PP_1780 +1.1 9.5 putative mannosyltransferase compare
PP_4069 +1.0 3.1 conserved protein of unknown function compare
PP_2144 +1.0 3.8 Transcriptional regulator, TetR family compare
PP_0123 +1.0 5.5 DNA polymerase I, 5 compare
PP_0856 +1.0 3.6 conserved lipoprotein of unknown function compare
PP_1656 +1.0 4.5 ATP:GTP 3'-pyrophosphotransferase compare
PP_4964 +1.0 2.1 D-erythrose 4-phosphate dehydrogenase compare
PP_2745 +1.0 3.9 Universal stress protein family compare
PP_4009 +1.0 3.9 ATP-dependent Clp protease adapter protein ClpS compare
PP_1344 +1.0 1.5 conserved protein of unknown function compare
PP_5309 +0.9 0.6 oxidative and nitrosative stress transcriptional dual regulator compare
PP_4785 +0.9 5.2 conserved exported protein of unknown function compare
PP_2437 +0.9 6.6 putative Acyl-CoA dehydrogenase compare
PP_1774 +0.9 2.7 conserved exported protein of unknown function compare
PP_3449 +0.9 2.6 conserved exported protein of unknown function compare
PP_1214 +0.9 2.8 putative transcriptional regulatory protein compare
PP_4150 +0.9 4.3 microcin C transporter - ATP binding subunit compare
PP_3908 +0.9 3.0 conserved protein of unknown function compare
PP_4058 +0.9 6.0 1,4-alpha-glucan branching enzyme compare
PP_1268 +0.9 1.8 putative HtrA suppressor protein sohA compare
PP_2330 +0.9 2.7 conserved protein of unknown function compare
PP_2253 +0.9 1.5 Transcriptional regulator, GntR family compare
PP_3346 +0.9 3.1 Nickel transporter ATP-binding protein compare
PP_1198 +0.9 2.1 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_5358 +0.9 4.6 conserved protein of unknown function compare
PP_1565 +0.8 4.1 Phage portal protein, HK97 family compare
PP_1430 +0.8 5.2 putative periplasmic serine endoprotease DegP-like compare
PP_5058 +0.8 3.7 Carboxy-terminal-processing protease compare
PP_2322 +0.8 6.0 Major outer membrane lipoprotein compare
PP_1548 +0.8 2.9 conserved protein of unknown function compare
PP_1563 +0.8 6.1 putative Phage terminase, large subunit compare
PP_2121 +0.8 2.2 putative Lipoprotein compare
PP_0063 +0.8 2.5 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_0630 +0.8 1.3 DNA gyrase inhibitor YacG compare
PP_4555 +0.8 1.6 conserved protein of unknown function compare
PP_0241 +0.8 2.6 Transporter compare
PP_4739 +0.8 1.8 conserved protein of unknown function compare
PP_3318 +0.8 2.2 conserved protein of unknown function compare
PP_1187 +0.8 4.1 sensor protein compare
PP_0962 +0.8 3.1 toluene-tolerance protein compare
PP_0673 +0.8 1.7 conserved protein of unknown function compare
PP_4268 +0.8 1.6 nucleoid-associated broad specificity regulator compare
PP_3810 +0.8 1.4 conserved protein of unknown function compare
PP_1581 +0.8 6.6 BNR domain protein compare
PP_4642 +0.8 1.3 Cyclic diguanosine monophosphate-binding protein compare
PP_0963 +0.8 1.6 putative BolA family protein compare
PP_3365 +0.8 1.3 Acetolactate synthase compare
PP_2390 +0.8 4.8 Transcriptional regulator, LysR family compare
PP_1206 +0.7 4.2 basic-amino-acid specific porin OprD compare
PP_3328 +0.7 1.3 putative Ring-cleaving dioxygenase compare
PP_4149 +0.7 4.4 putative inner membrane ABC transporter permease protein compare
PP_2439 +0.7 2.7 peroxiredoxin, alkylhydroperoxide reductase - small subunit compare
PP_5230 +0.7 2.2 Tyrosine recombinase XerC compare
PP_1803 +0.7 5.7 UDP-sugar epimerase compare
PP_0881 +0.7 2.8 dipeptide ABC transporter - putative membrane subunit compare
PP_5146 +0.7 4.0 RNA pyrophosphohydrolase compare
PP_1058 +0.7 6.3 conserved protein of unknown function compare
PP_1578 +0.7 4.0 conserved protein of unknown function compare
PP_1543 +0.7 3.8 conserved protein of unknown function compare
PP_1568 +0.7 1.2 conserved protein of unknown function compare
PP_0852 +0.7 3.2 Transcriptional regulator, Cro/CI family compare
PP_1435 +0.7 2.4 DNA repair protein RecO compare
PP_1553 +0.7 2.0 conserved protein of unknown function compare
PP_1577 +0.7 6.1 Phage tail tape meausure protein, lambda family compare
PP_0287 +0.7 4.2 conserved exported protein of unknown function compare
PP_4147 +0.7 4.3 microcin C transporter - periplasmic binding protein compare
PP_1355 +0.7 6.7 Muropeptide permease AmpG compare
PP_3831 +0.7 3.6 conserved protein of unknown function compare
PP_4148 +0.7 3.9 putative inner membrane ABC transporter permease protein compare
PP_3314 +0.7 2.8 Heat shock protein, HSP20 family compare
PP_1513 +0.7 2.9 Ribosomal RNA small subunit methyltransferase J compare
PP_1561 +0.7 3.4 putative Phage holin compare
PP_1787 +0.7 2.3 conserved protein of unknown function compare
PP_5514 +0.7 3.5 conserved protein of unknown function compare
PP_0859 +0.7 3.2 putative ketoglutaramate omega-amidase compare
PP_4952 +0.7 1.7 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_2299 +0.7 2.9 Trigger factor compare
PP_3967 +0.7 1.5 MutT/nudix family protein compare
PP_1580 +0.7 4.9 conserved protein of unknown function compare
PP_2332 +0.7 2.5 conserved exported protein of unknown function compare
PP_1113 +0.7 4.9 Pyridoxal-phosphate dependent enzyme family protein compare
PP_2387 +0.7 2.5 conserved protein of unknown function compare
PP_4836 +0.7 2.4 conserved exported protein of unknown function compare
PP_5253 +0.7 1.5 Arylesterase compare
PP_1742 +0.7 2.6 conserved inner membrane protein of unknown function compare
PP_4172 +0.7 3.6 conserved exported protein of unknown function compare
PP_4296 +0.7 1.8 conserved exported protein of unknown function compare
PP_1574 +0.7 3.0 conserved protein of unknown function compare
PP_1579 +0.7 5.4 conserved protein of unknown function compare
PP_2333 +0.7 2.6 GntR family transcriptional regulator compare
PP_3248 +0.7 2.1 Dyp-type peroxidase family protein compare
PP_4697 +0.7 2.3 poly(A) polymerase compare
PP_4917 +0.7 1.9 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_1564 +0.7 3.6 conserved exported protein of unknown function compare
PP_0540 +0.7 4.0 conserved inner membrane protein compare
PP_1572 +0.7 2.6 conserved protein of unknown function compare
PP_1041 +0.7 1.8 twin arginine protein export complex subunit compare
PP_3656 +0.7 4.9 putative Aromatic compound-specific porin compare
PP_1576 +0.7 3.0 putative Immunity protein compare
PP_2323 +0.7 5.4 conserved protein of unknown function compare
PP_2163 +0.7 3.1 VacJ lipoprotein compare
PP_1702 +0.7 2.3 Recombination-associated protein RdgC compare
PP_1570 +0.7 2.6 Head-tail adaptor compare
PP_1216 +0.6 1.6 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1573 +0.6 2.9 putative Major tail protein compare
PP_5456 +0.6 0.9 conserved protein of unknown function compare
PP_1930 +0.6 2.0 arsenic resistance transcriptional regulator compare
PP_3132 +0.6 4.2 putative Polysaccharide transporter compare
PP_1226 +0.6 2.7 pre-queuosine 0 synthase compare
PP_1582 +0.6 4.9 conserved protein of unknown function compare
PP_4406 +0.6 1.8 conserved protein of unknown function compare
PP_1004 +0.6 1.4 conserved protein of unknown function compare
PP_3427 +0.6 2.5 Multidrug efflux RND outer membrane protein OprN compare
PP_0880 +0.6 2.5 dipeptide ABC transporter - putative membrane subunit compare
PP_2700 +0.6 1.5 AhpC/TSA family protein compare
PP_5500 +0.6 0.9 protein of unknown function compare
PP_0903 +0.6 3.2 conserved protein of unknown function compare
PP_2309 +0.6 0.9 conserved protein of unknown function compare
PP_2793 +0.6 2.1 Acyl-CoA dehydrogenase family protein compare
PP_5310 +0.6 2.5 junction-specific ATP-dependent DNA helicase compare
PP_5600 +0.6 1.0 conserved protein of unknown function compare
PP_3075 +0.6 1.7 putative transcriptional regulator compare
PP_0809 +0.6 4.2 disulfide bond formation protein B compare
PP_0048 +0.6 1.1 conserved protein of unknown function compare
PP_1544 +0.6 1.6 conserved protein of unknown function compare
PP_4073 +0.6 1.1 conserved exported protein of unknown function compare
PP_4199 +0.6 0.9 putative Lipoprotein compare
PP_0191 +0.6 2.8 Transcriptional regulatory protein AlgQ compare
PP_0435 +0.6 5.3 Peptidase, M23/M37 family compare
PP_2320 +0.6 5.0 conserved exported protein of unknown function compare
PP_5114 +0.6 0.7 putative adenine methyltransferase compare
PP_2972 +0.6 1.4 conserved protein of unknown function compare
PP_3659 +0.6 4.2 transcriptional regulator, AraC family compare
PP_4018 +0.6 1.6 Acetyltransferase, GNAT family compare
PP_1761 +0.6 4.4 diguanylate cyclase with phosphodiesterase domain compare
PP_0197 +0.6 1.6 conserved protein of unknown function compare
PP_2160 +0.6 1.5 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_2130 +0.6 3.6 putative Soluble lytic transglycosylase compare
PP_0040 +0.6 1.6 hypothetical protein compare
PP_0961 +0.6 3.1 toluene tolerance protein compare
PP_2764 +0.6 1.6 FMN reductase (NADPH) compare
PP_2000 +0.6 0.8 amidophosphoribosyl transferase compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source Hexanoic acid in Pseudomonas putida KT2440

For carbon source Hexanoic acid across organisms