Experiment set10IT054 for Pseudomonas putida KT2440

Compare to:

Valeric acid carbon source

200 most important genes:

  gene name fitness t score description  
PP_1020 -6.6 -2.7 putative glucose-6-phosphate 1-epimerase compare
PP_0293 -5.9 -2.5 Imidazole glycerol phosphate synthase subunit HisF compare
PP_2903 -5.8 -2.4 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_1142 -5.5 -1.3 conserved protein of unknown function compare
PP_5017 -5.5 -1.3 Sec-independent protein translocase protein TatB compare
PP_1986 -5.3 -2.7 3-isopropylmalate dehydratase small subunit compare
PP_4532 -4.8 -2.6 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_1079 -4.8 -5.4 Ornithine carbamoyltransferase compare
PP_5022 -4.7 -1.6 Glutamine transport ATP-binding protein GlnQ compare
PP_5095 -4.6 -2.2 pyrroline-5-carboxylate reductase compare
PP_0630 -4.6 -1.1 DNA gyrase inhibitor YacG compare
PP_0593 -4.4 -1.1 putative ribosome-binding factor compare
PP_4701 -4.3 -1.0 glucose-6-phosphate isomerase compare
PP_3808 -4.1 -1.4 Antibiotic synthesis protein MbtH compare
PP_2631 -4.1 -1.4 putative cellulose biosynthesis, BcsF/YhjT compare
PP_5289 -4.0 -4.5 Acetylglutamate kinase compare
PP_4909 -3.9 -8.5 phosphoserine phosphatase compare
PP_3999 -3.9 -6.9 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0082 -3.9 -6.3 tryptophan synthase alpha chain compare
PP_5128 -3.8 -6.8 Dihydroxy-acid dehydratase compare
PP_5114 -3.8 -2.0 putative adenine methyltransferase compare
PP_2868 -3.8 -6.1 Transcriptional regulator, Cro/CI family compare
PP_0290 -3.6 -5.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_3037 -3.6 -2.9 C4-type zinc finger protein, DksA/TraR family compare
PP_3637 -3.6 -1.2 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_2087 -3.5 -2.9 CmpX protein compare
PP_4828 -3.5 -1.2 Precorrin-8X methylmutase compare
PP_0763 -3.5 -8.2 Medium-chain-fatty-acid CoA ligase compare
PP_2337 -3.4 -2.3 aconitate isomerase compare
PP_4678 -3.3 -8.9 Ketol-acid reductoisomerase compare
PP_4680 -3.3 -9.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1025 -3.2 -8.5 2-isopropylmalate synthase compare
PP_0965 -3.2 -5.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0966 -3.1 -6.0 Histidinol dehydrogenase compare
PP_3511 -3.1 -4.5 Branched-chain-amino-acid aminotransferase compare
PP_3532 -3.1 -1.6 Transcriptional regulator, AsnC family compare
PP_0292 -3.1 -2.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5098 -3.1 -4.5 methionine biosynthesis protein MetW compare
PP_0184 -3.0 -6.1 Argininosuccinate lyase compare
PP_2371 -2.9 -4.8 Sulphite reductase hemoprotein, beta subunit compare
PP_1995 -2.9 -5.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0833 -2.9 -1.9 queuine tRNA-ribosyltransferase compare
PP_4999 -2.9 -2.1 dihydroorotase-like protein compare
PP_1097 -2.8 -0.9 Methionine--tRNA ligase compare
PP_2137 -2.8 -2.4 beta-ketoadipyl CoA thiolase, beta component compare
PP_5054 -2.8 -2.3 glutaredoxin 3 compare
PP_2001 -2.8 -5.3 O-succinylhomoserine sulfhydrylase compare
PP_2335 -2.8 -4.4 methylcitrate synthase compare
PP_1269 -2.7 -0.9 Universal stress protein family compare
PP_0957 -2.7 -1.8 D-arabinose 5-phosphate isomerase compare
PP_2378 -2.7 -3.0 Fe/S biogenesis protein NfuA compare
PP_0339 -2.7 -2.6 Pyruvate dehydrogenase E1 component compare
PP_5717 -2.6 -2.2 conserved protein of unknown function compare
PP_0421 -2.6 -4.3 Anthranilate phosphoribosyltransferase compare
PP_4700 -2.6 -3.5 pantothenate synthetase compare
PP_4120 -2.6 -2.5 NADH-quinone oxidoreductase subunit B compare
PP_5014 -2.6 -2.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_5600 -2.5 -1.9 conserved protein of unknown function compare
PP_2499 -2.5 -1.2 conserved protein of unknown function compare
PP_4342 -2.5 -2.9 flagellar synthesis regulator, putative ATPase compare
PP_3649 -2.4 -3.0 Transcriptional regulator, GntR family compare
PP_5097 -2.4 -6.9 homoserine O-acetyltransferase compare
PP_1231 -2.3 -3.2 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_2334 -2.3 -3.0 2-methylisocitrate lyase compare
PP_0422 -2.2 -3.9 Indole-3-glycerol phosphate synthase compare
PP_5185 -2.2 -3.5 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4874 -2.2 -1.0 50S ribosomal protein L9 compare
PP_4131 -2.2 -4.6 NADH-quinone oxidoreductase subunit N compare
PP_2370 -2.2 -2.8 conserved protein of unknown function compare
PP_0653 -2.2 -1.2 conserved protein of unknown function compare
PP_0185 -2.2 -4.0 Positive alginate biosynthesis regulatory protein compare
PP_2327 -2.2 -3.5 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0083 -2.2 -3.3 tryptophan synthase beta chain compare
PP_4830 -2.1 -3.4 precorrin-6Y C(5,15)-methyltransferase compare
PP_3989 -2.1 -2.7 DNA-cytosine methyltransferase compare
PP_4098 -2.1 -1.6 UvrABC system protein C compare
PP_1985 -2.1 -3.3 3-isopropylmalate dehydratase large subunit compare
PP_0417 -2.0 -7.4 Anthranilate synthase component 1 compare
PP_2756 -2.0 -1.3 conserved protein of unknown function compare
PP_2504 -2.0 -2.4 putative tautomerase K2 compare
PP_0967 -2.0 -4.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1988 -2.0 -4.1 3-isopropylmalate dehydrogenase compare
PP_4129 -1.9 -1.3 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1664 -1.9 -3.3 phosphoribosylglycinamide formyltransferase 1 compare
PP_0235 -1.9 -2.7 Peroxidase compare
PP_3036 -1.9 -3.4 conserved protein of unknown function compare
PP_1417 -1.9 -3.7 putative Tricarboxylate transport protein TctB compare
PP_4890 -1.9 -2.6 ATP phosphoribosyltransferase regulatory subunit compare
PP_4953 -1.8 -2.2 putative oxidoreductase with FAD/NAD(P)-binding domain compare
PP_0289 -1.8 -2.7 Imidazoleglycerol-phosphate dehydratase compare
PP_0767 -1.8 -4.6 Transcriptional regulator, LuxR family compare
PP_t64 -1.8 -1.7 tRNA-Gly compare
PP_2203 -1.8 -1.8 conserved protein of unknown function compare
PP_1654 -1.8 -2.3 cysteine synthase B compare
PP_4679 -1.8 -2.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0025 -1.8 -1.0 hypothetical protein compare
PP_3447 -1.7 -1.1 conserved membrane protein of unknown function compare
PP_2747 -1.7 -1.4 conserved protein of unknown function compare
PP_3409 -1.7 -1.9 putative Cobalamin biosynthesis protein cobE compare
PP_1381 -1.7 -1.2 4-carboxymuconolactone decarboxylase compare
PP_0962 -1.7 -1.4 toluene-tolerance protein compare
PP_2144 -1.6 -3.0 Transcriptional regulator, TetR family compare
PP_5324 -1.6 -2.0 Response regulator compare
PP_2002 -1.6 -1.8 putative enzyme compare
PP_1552 -1.6 -2.3 putative Phage replication protein compare
PP_5201 -1.6 -2.2 conserved protein of unknown function, UPF0149 family compare
PP_4126 -1.6 -0.9 NADH-quinone oxidoreductase subunit I compare
PP_1088 -1.6 -4.0 Argininosuccinate synthase compare
PP_1941 -1.6 -2.9 conserved protein of unknown function compare
PP_4726 -1.5 -1.7 Chaperone protein DnaJ compare
PP_0370 -1.5 -6.5 Acyl-CoA dehydrogenase family protein compare
PP_2681 -1.5 -1.2 coenzyme PQQ synthesis protein D compare
PP_1629 -1.5 -3.5 Protein RecA compare
PP_1825 -1.5 -1.4 conserved exported protein of unknown function compare
PP_2402 -1.5 -1.3 putative Sensor histidine kinase compare
PP_1845 -1.5 -2.2 Enoyl-CoA hydratase/isomerase family protein compare
PP_5571 -1.4 -1.0 conserved protein of unknown function compare
PP_3378 -1.4 -1.2 putative 2-ketogluconokinase compare
PP_4262 -1.4 -1.5 Cytochrome oxidase maturation protein, cbb3-type compare
PP_4754 -1.4 -2.8 Transcriptional regulator, TetR family compare
PP_4560 -1.4 -4.1 putative Ribonuclease BN compare
PP_0565 -1.4 -2.8 putative enzyme compare
PP_5451 -1.4 -1.6 protein of unknown function compare
PP_2044 -1.4 -1.2 conserved inner membrane protein of unknown function compare
PP_3211 -1.4 -1.6 ABC transporter, ATP-binding protein compare
PP_0509 -1.4 -1.5 conserved protein of unknown function compare
PP_2274 -1.4 -1.5 conserved protein of unknown function compare
PP_2070 -1.4 -1.1 Transcriptional regulator, AraC family compare
PP_4993 -1.4 -2.4 Glutathione synthetase compare
PP_2302 -1.4 -3.0 DNA-binding, ATP-dependent protease compare
PP_2103 -1.3 -1.1 conserved protein of unknown function compare
PP_0301 -1.3 -2.7 betainyl-CoA thiolase compare
PP_0848 -1.3 -1.4 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_1310 -1.3 -1.2 conserved hypothetical protein compare
PP_3824 -1.3 -2.2 conserved exported protein of unknown function compare
PP_0556 -1.3 -0.9 Acetoin catabolism protein compare
PP_4569 -1.3 -2.3 conserved protein of unknown function compare
PP_5313 -1.3 -1.3 DNA-binding protein HU-alpha compare
PP_4214 -1.3 -2.1 pyoverdine biosynthesis related protein compare
PP_1713 -1.3 -1.0 Transcriptional regulator PcaQ compare
PP_0846 -1.3 -0.9 DnaK-like molecular chaperone specific for IscU compare
PP_2355 -1.3 -1.9 Response regulator receiver protein compare
PP_4515 -1.3 -3.1 Transcriptional regulator, MarR family compare
PP_0414 -1.3 -2.3 Polyamine ABC transporter, permease protein compare
PP_1353 -1.3 -1.4 conserved membrane protein of unknown function compare
PP_1368 -1.3 -2.4 putative membrane protein containing a glycosyltransferase domain compare
PP_0750 -1.3 -2.9 conserved protein of unknown function compare
PP_5038 -1.3 -1.0 conserved lipoprotein of unknown function compare
PP_0306 -1.3 -2.0 conserved protein of unknown function compare
PP_2299 -1.3 -1.4 Trigger factor compare
PP_4642 -1.3 -0.8 Cyclic diguanosine monophosphate-binding protein compare
PP_1428 -1.2 -0.7 Sigma factor AlgU negative regulatory protein compare
PP_1808 -1.2 -1.3 glucose-6-phosphate isomerase compare
PP_0420 -1.2 -3.2 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0063 -1.2 -2.1 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_2695 -1.2 -1.8 Transcriptional regulator, LysR family compare
PP_5227 -1.2 -3.0 diaminopimelate decarboxylase compare
PP_0241 -1.2 -1.9 Transporter compare
PP_0319 -1.2 -1.3 conserved protein of unknown function compare
PP_5094 -1.2 -1.9 putative enzyme with PLP binding domain compare
PP_5666 -1.2 -1.4 putative microcin B17-like processing protein, McbB family compare
PP_2132 -1.2 -1.5 Universal stress protein compare
PP_1404 -1.2 -1.8 conserved protein of unknown function compare
PP_0086 -1.2 -1.4 conserved protein of unknown function compare
PP_2110 -1.2 -2.2 putative ribosomal large subunit pseudouridine synthase compare
PP_1455 -1.2 -1.3 conserved protein of unknown function compare
PP_2326 -1.2 -3.8 Universal stress protein compare
PP_2847 -1.2 -1.0 Urease accessory protein UreJ compare
PP_1415 -1.2 -1.7 putative membrane associated enzyme subunit compare
PP_0819 -1.2 -2.3 conserved ferredoxin-like protein of unknown function compare
PP_5639 -1.2 -4.4 conserved exported protein of unknown function compare
PP_3938 -1.2 -1.3 conserved protein of unknown function compare
PP_t29 -1.2 -1.3 tRNA-Ala compare
PP_2121 -1.2 -0.8 putative Lipoprotein compare
PP_5667 -1.2 -1.4 putative microcin B17-like-processing protein, McbC family compare
PP_2721 -1.2 -2.6 conserved membrane protein of unknown function compare
PP_3487 -1.1 -1.1 conserved exported protein of unknown function compare
PP_2745 -1.1 -1.2 Universal stress protein family compare
PP_3963 -1.1 -1.2 conserved protein of unknown function compare
PP_3117 -1.1 -1.2 putative protein involved in error-prone processing of DNA lesions compare
PP_3884 -1.1 -2.3 Phage holin, lambda family compare
PP_0303 -1.1 -1.4 dehydrocarnitine cleavage enzyme compare
PP_5483 -1.1 -1.2 conserved protein of unknown function compare
PP_1124 -1.1 -2.3 conserved membrane protein of unknown function compare
PP_5015 -1.1 -1.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0153 -1.1 -0.8 hypothetical protein compare
PP_5748 -1.1 -1.5 cytochrome c heme lyase subunit compare
PP_0164 -1.1 -2.6 conserved protein of unknown function compare
PP_1176 -1.1 -1.3 conserved protein of unknown function compare
PP_4968 -1.1 -3.4 DNA ligase B compare
PP_1038 -1.1 -1.5 conserved protein of unknown function compare
PP_0621 -1.1 -1.6 conserved protein of unknown function compare
PP_3006 -1.1 -2.6 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_3331 -1.1 -2.5 conserved membrane protein of unknown function compare
PP_4213 -1.1 -1.0 putative dipeptidase compare
PP_1303 -1.1 -2.8 Sulfate adenylyltransferase subunit 2 compare
PP_4880 -1.1 -4.5 exoribonuclease R compare
PP_4181 -1.1 -2.9 conserved protein of unknown function compare
PP_5224 -1.0 -1.3 conserved protein of unknown function compare
PP_0768 -1.0 -1.9 Response regulator/TPR domain protein compare


Specific Phenotypes

For 12 genes in this experiment

For carbon source Valeric acid in Pseudomonas putida KT2440

For carbon source Valeric acid across organisms