Experiment set10IT052 for Pseudomonas putida KT2440

Compare to:

1-Pentanol carbon source

200 most detrimental genes:

  gene name fitness t score description  
PP_0406 +2.0 15.9 Nucleotidyltransferase family protein compare
PP_4482 +1.9 9.5 Transcriptional regulator, AraC family compare
PP_1386 +1.9 15.1 Probable efflux pump periplasmic linker TtgA compare
PP_1385 +1.8 17.4 Probable efflux pump membrane transporter TtgB compare
PP_1968 +1.7 11.0 TetR family transcriptional regulator compare
PP_4917 +1.7 7.1 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_5337 +1.6 9.9 LysR family transcriptional regulator compare
PP_1384 +1.6 12.8 Probable efflux pump outer membrane protein TtgC compare
PP_4891 +1.5 7.9 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4892 +1.4 8.9 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_2379 +1.4 7.5 putative cytochrome oxidase biogenesis protein compare
PP_0137 +1.3 10.4 glutamate/aspartate-proton DAACS transporter compare
PP_1067 +1.3 10.4 Sensor histidine kinase compare
PP_0789 +1.3 6.1 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_4942 +1.3 4.9 conserved protein of unknown function compare
PP_1562 +1.2 4.4 putative Phage terminase, small subunit compare
PP_1764 +1.2 9.5 Phosphoglycolate phosphatase 2 compare
PP_0841 +1.2 4.4 DNA-binding transcriptional dual regulator 2Fe-2S cluster IscR compare
PP_1664 +1.2 5.1 phosphoribosylglycinamide formyltransferase 1 compare
PP_3821 +1.2 9.0 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4941 +1.1 7.7 conserved exported protein of unknown function compare
PP_4943 +1.1 2.6 putative Glycosyl transferase compare
PP_1066 +1.1 5.4 C4-dicarboxylate transport transcriptional regulatory protein compare
PP_4379 +1.1 5.4 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_0434 +1.1 8.2 Anhydro-N-acetylmuramic acid kinase compare
PP_0138 +1.1 6.0 conserved membrane protein of unknown function compare
PP_1362 +1.1 4.9 pyruvate kinase II compare
PP_3454 +1.0 5.3 putative transcriptional regulatory protein compare
PP_5331 +1.0 4.0 Long-chain acyl-CoA thioester hydrolase compare
PP_2387 +1.0 2.5 conserved protein of unknown function compare
PP_1646 +1.0 5.4 putative Thioredoxin compare
PP_5083 +1.0 5.0 putative Type IV pili biogenesis protein PilM compare
PP_0405 +1.0 8.9 conserved protein of unknown function compare
PP_0593 +0.9 1.7 putative ribosome-binding factor compare
PP_2313 +0.9 2.8 conserved membrane protein of unknown function compare
PP_4824 +0.9 5.8 Sensor histidine kinase/response regulator compare
PP_1568 +0.9 1.7 conserved protein of unknown function compare
PP_1355 +0.9 8.5 Muropeptide permease AmpG compare
PP_4910 +0.9 1.4 conserved protein of unknown function compare
PP_4264 +0.9 5.8 oxygen-independent coproporphyrinogen III dehydrogenase compare
PP_5428 +0.9 2.2 conserved exported protein of unknown function compare
PP_1097 +0.9 1.1 Methionine--tRNA ligase compare
PP_1566 +0.9 4.1 Peptidase U35 compare
PP_5114 +0.9 2.2 putative adenine methyltransferase compare
PP_4739 +0.9 2.1 conserved protein of unknown function compare
PP_3627 +0.8 6.7 conserved protein of unknown function compare
PP_1804 +0.8 6.3 Glycosyl transferase WbpL compare
PP_3245 +0.8 1.8 conserved protein of unknown function compare
PP_5236 +0.8 6.2 conserved protein of unknown function compare
PP_2568 +0.8 1.3 Ring-cleaving dioxygenase compare
PP_2456 +0.8 2.3 D-ribose ABC transporter - permease subunit compare
PP_3453 +0.8 6.1 putative Sensor protein RstB compare
PP_5445 +0.8 2.1 conserved protein of unknown function compare
PP_0885 +0.8 5.8 dipeptide ABC transporter - periplasmic binding protein compare
PP_5706 +0.8 2.3 Sec translocation complex - SecG subunit compare
PP_5028 +0.8 3.1 proline iminopeptidase compare
PP_5191 +0.8 2.7 conserved exported protein of unknown function compare
PP_1565 +0.8 4.4 Phage portal protein, HK97 family compare
PP_5350 +0.7 2.7 Transcriptional regulator, RpiR family compare
PP_2013 +0.7 3.9 conserved protein of unknown function compare
PP_5027 +0.7 2.4 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_0065 +0.7 2.8 NAD-binding component of TrK potassium transporter compare
PP_0594 +0.7 5.5 Transcriptional regulator, TetR family compare
PP_2581 +0.7 1.6 conserved protein of unknown function compare
PP_4561 +0.7 1.2 stress response protein compare
PP_2104 +0.7 3.4 conserved membrane protein of unknown function compare
PP_1799 +0.7 5.8 GDP-mannose 4,6-dehydratase compare
PP_2449 +0.7 4.1 conserved protein of unknown function compare
PP_1493 +0.7 2.3 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_3378 +0.6 1.3 putative 2-ketogluconokinase compare
PP_5338 +0.6 1.6 aspartate ammonia-lyase compare
PP_5711 +0.6 2.3 protein of unknown function compare
PP_3248 +0.6 2.6 Dyp-type peroxidase family protein compare
PP_2454 +0.6 2.2 ribose ABC transporter, periplasmic ribose-binding subunit compare
PP_4485 +0.6 4.9 histidine / lysine / arginine / ornithine ABC transporter - permease subunit compare
PP_2388 +0.6 2.3 Transporter, LysE family compare
PP_1569 +0.6 2.9 conserved protein of unknown function compare
PP_2972 +0.6 1.0 conserved protein of unknown function compare
PP_4356 +0.6 2.1 Flagellar protein FliO compare
PP_1548 +0.6 1.5 conserved protein of unknown function compare
PP_1528 +0.6 0.8 conserved protein of unknown function compare
PP_4551 +0.6 3.1 Hydrolase, alpha/beta fold family compare
PP_4944 +0.6 2.8 Carbamoyltransferase compare
PP_4847 +0.6 2.8 chaperone modulatory of CbpA co-chaperone protein compare
PP_3808 +0.6 1.5 Antibiotic synthesis protein MbtH compare
PP_0962 +0.6 2.1 toluene-tolerance protein compare
PP_2496 +0.6 3.5 conserved protein of unknown function compare
PP_3903 +0.6 1.7 conserved protein of unknown function compare
PP_4018 +0.6 2.1 Acetyltransferase, GNAT family compare
PP_5667 +0.6 2.8 putative microcin B17-like-processing protein, McbC family compare
PP_1912 +0.6 2.3 Phosphate acyltransferase compare
PP_0883 +0.6 4.4 glycine-glutamate dipeptide porin compare
PP_4375 +0.6 4.1 flagellar chaperone, inhibits premature FliC assembly compare
PP_2302 +0.6 2.6 DNA-binding, ATP-dependent protease compare
PP_2724 +0.6 3.4 conserved protein of unknown function compare
PP_0135 +0.6 2.0 conserved exported protein of unknown function compare
PP_2970 +0.6 1.8 conserved exported protein of unknown function compare
PP_2459 +0.6 1.7 ribose pyranase compare
PP_3552 +0.6 2.5 Sensory box histidine kinase compare
PP_1776 +0.6 5.1 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_1261 +0.5 1.6 2-ketoaldonate reductase / hydroxypyruvate/glyoxylate reductase compare
PP_0001 +0.5 0.7 probable chromosome-partitioning protein compare
PP_1792 +0.5 5.1 Glycosyl transferase, group 2 family protein compare
PP_2700 +0.5 1.4 AhpC/TSA family protein compare
PP_4961 +0.5 1.6 putative Lipoprotein compare
PP_1122 +0.5 0.9 OmpA family protein compare
PP_4373 +0.5 4.5 Transcriptional regulator FleQ compare
PP_3760 +0.5 3.5 putative methyltransferase compare
PP_3672 +0.5 2.4 conserved protein of unknown function compare
PP_3770 +0.5 2.3 conserved protein of unknown function compare
PP_2389 +0.5 3.5 conserved protein of unknown function compare
PP_5471 +0.5 1.1 putative response regulator receiver protein compare
PP_1787 +0.5 2.2 conserved protein of unknown function compare
PP_1909 +0.5 2.2 putative septum formation protein compare
PP_4940 +0.5 3.0 Putative glycosyltransferase compare
PP_2455 +0.5 2.1 ribose ABC transporter - ATP-binding subunit compare
PP_1800 +0.5 4.1 Oxidoreductase Rmd compare
PP_1028 +0.5 3.0 Transcriptional regulator, LysR family compare
PP_0062 +0.5 2.5 3-methyl-adenine DNA glycosylase I compare
PP_4486 +0.5 3.7 lysine / arginine / ornithine ABC transporter - periplasmic binding protein compare
PP_1999 +0.5 1.5 membrane protein required for colicin V production compare
PP_1663 +0.5 3.5 conserved exported protein of unknown function compare
PP_1742 +0.5 1.8 conserved inner membrane protein of unknown function compare
PP_3034 +0.5 1.7 putative Regulator protein compare
PP_0683 +0.5 2.9 conserved protein of unknown function compare
PP_1805 +0.5 4.7 Polysaccharide biosynthesis protein compare
PP_1570 +0.5 2.9 Head-tail adaptor compare
PP_0007 +0.5 1.9 conserved hypothetical protein compare
PP_4484 +0.5 4.0 histidine / lysine / arginine / ornithine ABC transporter - permease subunit compare
PP_2592 +0.5 2.3 Ferric siderophore ABC transporter, ATP-binding protein compare
PP_4541 +0.5 2.6 peptidyl-prolyl cis-trans isomerase A (rotamase A) compare
PP_0951 +0.5 3.6 Ribosome hibernation promoting factor compare
PP_5271 +0.5 3.0 DNA-binding transcriptional dual regulator, leucine-binding compare
PP_4911 +0.5 2.2 conserved protein of unknown function compare
PP_1454 +0.5 1.8 conserved protein of unknown function compare
PP_2857 +0.5 1.3 conserved exported protein of unknown function compare
PP_1918 +0.5 4.2 septation protein compare
PP_4383 +0.5 3.5 Flagellar P-ring protein compare
PP_1573 +0.5 2.4 putative Major tail protein compare
PP_2765 +0.5 1.1 putative Sulfonate monooxygenase MsuD compare
PP_1564 +0.5 3.0 conserved exported protein of unknown function compare
PP_0123 +0.5 2.9 DNA polymerase I, 5 compare
PP_1780 +0.5 4.5 putative mannosyltransferase compare
PP_3532 +0.5 1.3 Transcriptional regulator, AsnC family compare
PP_2130 +0.5 3.2 putative Soluble lytic transglycosylase compare
PP_3143 +0.5 2.8 Transcriptional regulator, LysR family compare
PP_3663 +0.5 3.5 GGDEF domain protein compare
PP_4365 +0.5 3.4 Flagellar protein FliJ compare
PP_5604 +0.5 1.0 putative subtilisin-like serine protease compare
PP_5121 +0.5 1.7 conserved exported protein of unknown function compare
PP_3640 +0.5 2.1 Transcriptional regulator, AraC family compare
PP_1567 +0.5 3.2 Capsid protein compare
PP_1713 +0.5 1.2 Transcriptional regulator PcaQ compare
PP_4367 +0.5 2.1 Flagellar assembly protein FliH compare
PP_4069 +0.5 1.9 conserved protein of unknown function compare
PP_0204 +0.5 2.5 Transcriptional regulator, GntR family compare
PP_2499 +0.5 0.9 conserved protein of unknown function compare
PP_2610 +0.5 1.9 conserved protein of unknown function compare
PP_2402 +0.5 0.8 putative Sensor histidine kinase compare
PP_1563 +0.5 3.5 putative Phage terminase, large subunit compare
PP_2390 +0.5 3.3 Transcriptional regulator, LysR family compare
PP_4394 +0.5 2.9 flagella basal body P-ring formation protein compare
PP_5426 +0.5 3.0 conserved protein of unknown function compare
PP_4196 +0.5 1.2 conserved exported protein of unknown function compare
PP_1055 +0.4 1.1 Type II secretion pathway protein GspN compare
PP_4517 +0.4 1.0 conserved protein of unknown function compare
PP_0113 +0.4 2.7 methionine ABC transporter, permease protein compare
PP_4251 +0.4 1.9 cytochrome c oxidase subunit, cbb3-type compare
PP_1062 +0.4 1.3 MutT/nudix family protein compare
PP_5587 +0.4 3.3 conserved protein of unknown function compare
PP_5024 +0.4 2.8 Amino acid ABC transporter, periplasmic amino acid-binding protein compare
PP_5212 +0.4 2.8 Oxidoreductase, iron-sulfur-binding compare
PP_4396 +0.4 1.7 conserved protein of unknown function compare
PP_1802 +0.4 4.1 glycosyl transferase compare
PP_2748 +0.4 1.4 putative Branched-chain amino acid ABC transporter, ATP-binding protein compare
PP_3314 +0.4 1.2 Heat shock protein, HSP20 family compare
PP_0435 +0.4 4.0 Peptidase, M23/M37 family compare
PP_1561 +0.4 1.6 putative Phage holin compare
PP_1803 +0.4 3.8 UDP-sugar epimerase compare
PP_0884 +0.4 3.1 dipeptide ABC transporter - periplasmic binding protein compare
PP_1793 +0.4 4.0 Glycosyl transferase, group 2 family protein compare
PP_5617 +0.4 1.8 conserved protein of unknown function compare
PP_2309 +0.4 0.7 conserved protein of unknown function compare
PP_2080 +0.4 3.6 NAD-specific glutamate dehydrogenase compare
PP_3638 +0.4 2.5 putative Acyl-CoA dehydrogenase compare
PP_1580 +0.4 2.7 conserved protein of unknown function compare
PP_1574 +0.4 2.5 conserved protein of unknown function compare
PP_2145 +0.4 3.1 beta-N-acetylglucosaminidase compare
PP_4358 +0.4 3.0 flagellar synthesis, switching and energizing component compare
PP_2148 +0.4 3.3 transcription-repair coupling factor compare
PP_1071 +0.4 2.9 glutamate / aspartate ABC transporter - periplasmic binding protein compare
PP_3967 +0.4 2.2 MutT/nudix family protein compare
PP_1022 +0.4 2.2 glucose 6-phosphate-1-dehydrogenase compare
PP_0775 +0.4 0.6 conserved protein of unknown function compare
PP_5080 +0.4 2.4 type 4 pili biogenesis protein compare
PP_2526 +0.4 1.3 conserved membrane protein of unknown function compare
PP_2738 +0.4 1.6 putative Transcriptional regulator compare
PP_3541 +0.4 0.8 Transporter, MgtC family compare
PP_1795 +0.4 3.4 conserved protein of unknown function compare
PP_4838 +0.4 3.4 Outer membrane copper receptor OprC compare


Specific Phenotypes

For 26 genes in this experiment

For carbon source 1-Pentanol in Pseudomonas putida KT2440

For carbon source 1-Pentanol across organisms