Experiment set10IT051 for Pseudomonas putida KT2440

Compare to:

Butanol carbon source

200 most important genes:

  gene name fitness t score description  
PP_1988 -6.4 -8.8 3-isopropylmalate dehydrogenase compare
PP_0293 -6.2 -4.1 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5659 -5.9 -5.3 protein of unknown function compare
PP_0691 -5.9 -4.1 Glutamate 5-kinase compare
PP_2370 -5.6 -3.9 conserved protein of unknown function compare
PP_4696 -5.1 -3.5 Nitrogen regulation protein NR(I) compare
PP_1079 -5.1 -7.5 Ornithine carbamoyltransferase compare
PP_5289 -4.9 -5.9 Acetylglutamate kinase compare
PP_5128 -4.9 -9.9 Dihydroxy-acid dehydratase compare
PP_0422 -4.8 -6.5 Indole-3-glycerol phosphate synthase compare
PP_5015 -4.7 -6.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4116 -4.7 -13.8 isocitrate lyase compare
PP_0967 -4.6 -12.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1985 -4.6 -5.0 3-isopropylmalate dehydratase large subunit compare
PP_4678 -4.6 -16.7 Ketol-acid reductoisomerase compare
PP_0966 -4.6 -12.0 Histidinol dehydrogenase compare
PP_0083 -4.4 -8.5 tryptophan synthase beta chain compare
PP_4679 -4.4 -7.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1088 -4.3 -13.3 Argininosuccinate synthase compare
PP_5098 -4.3 -8.7 methionine biosynthesis protein MetW compare
PP_0289 -4.3 -7.6 Imidazoleglycerol-phosphate dehydratase compare
PP_0290 -4.3 -7.8 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0417 -4.2 -17.0 Anthranilate synthase component 1 compare
PP_1995 -4.1 -10.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0421 -4.0 -7.7 Anthranilate phosphoribosyltransferase compare
PP_0082 -4.0 -7.7 tryptophan synthase alpha chain compare
PP_4890 -4.0 -5.9 ATP phosphoribosyltransferase regulatory subunit compare
PP_4565 -4.0 -12.8 Isocitrate dehydrogenase kinase/phosphatase compare
PP_2371 -4.0 -8.3 Sulphite reductase hemoprotein, beta subunit compare
PP_5097 -3.9 -12.8 homoserine O-acetyltransferase compare
PP_2168 -3.8 -9.8 Transaldolase compare
PP_0356 -3.8 -8.0 malate synthase G compare
PP_1986 -3.7 -4.9 3-isopropylmalate dehydratase small subunit compare
PP_0381 -3.7 -9.3 Coenzyme PQQ synthesis protein F compare
PP_4680 -3.7 -12.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5014 -3.7 -4.1 Phosphoribosyl-AMP cyclohydrolase compare
PP_2001 -3.7 -7.9 O-succinylhomoserine sulfhydrylase compare
PP_0184 -3.7 -7.7 Argininosuccinate lyase compare
PP_5085 -3.6 -10.2 malic enzyme B compare
PP_0965 -3.6 -7.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4700 -3.5 -2.4 pantothenate synthetase compare
PP_4909 -3.5 -7.0 phosphoserine phosphatase compare
PP_3999 -3.4 -9.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0846 -3.4 -2.7 DnaK-like molecular chaperone specific for IscU compare
PP_5185 -3.3 -6.4 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0420 -3.3 -8.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0292 -3.2 -4.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_3511 -3.1 -7.6 Branched-chain-amino-acid aminotransferase compare
PP_2675 -2.9 -3.9 Cytochrome c-type protein compare
PP_2327 -2.9 -7.3 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1025 -2.9 -8.8 2-isopropylmalate synthase compare
PP_1826 -2.8 -4.3 Hydrolase, isochorismatase family compare
PP_5347 -2.7 -9.4 pyruvate carboxylase subunit A compare
PP_4724 -2.7 -5.5 Carbamoyl-phosphate synthase small chain compare
PP_3554 -2.6 -12.9 Acyl-CoA dehydrogenase family protein compare
PP_0393 -2.5 -1.7 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4799 -2.5 -3.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_5217 -2.5 -14.9 Polyphosphate kinase compare
PP_5348 -2.4 -7.3 Transcriptional regulator, LysR family compare
PP_3551 -2.4 -2.0 DNA-binding response regulator, LuxR family compare
PP_4723 -2.3 -9.6 Carbamoyl-phosphate synthase large chain compare
PP_5346 -2.2 -7.4 pyruvate carboxylase subunit B compare
PP_3754 -2.2 -7.1 Beta-ketothiolase BktB compare
PP_2668 -2.2 -3.6 ABC efflux transporter, ATP-binding protein compare
PP_0566 -2.2 -1.4 translation-related factor compare
PP_3755 -2.1 -3.8 3-hydroxybutyryl-CoA dehydrogenase compare
PP_2682 -2.0 -5.0 Fe-containing alcohol dehydrogenase compare
PP_2217 -2.0 -3.3 enoyl-CoA hydratase compare
PP_0376 -1.9 -6.5 Coenzyme PQQ synthesis protein E compare
PP_5155 -1.9 -5.4 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_3553 -1.9 -7.1 AMP-binding domain protein compare
PP_1734 -1.9 -2.8 Probable septum site-determining protein MinC compare
PP_5475 -1.8 -1.9 conserved protein of unknown function compare
PP_3753 -1.8 -5.2 Transcriptional regulator, AraC family compare
PP_2328 -1.8 -4.5 Phosphoadenosine phosphosulfate reductase compare
PP_4828 -1.8 -1.6 Precorrin-8X methylmutase compare
PP_4320 -1.8 -4.7 cytochrome c-type biogenesis protein compare
PP_0001 -1.7 -1.6 probable chromosome-partitioning protein compare
PP_2433 -1.7 -1.9 conserved protein of unknown function compare
PP_4120 -1.7 -3.7 NADH-quinone oxidoreductase subunit B compare
PP_1654 -1.7 -3.4 cysteine synthase B compare
PP_0377 -1.6 -1.6 coenzyme PQQ synthesis protein D compare
PP_4695 -1.6 -6.0 Sensory box histidine kinase compare
PP_4829 -1.6 -2.4 putative precorrin-3B synthase compare
PP_5303 -1.6 -4.0 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0378 -1.6 -5.5 Pyrroloquinoline-quinone synthase compare
PP_4902 -1.5 -2.0 Oligoribonuclease compare
PP_4989 -1.5 -3.2 Protein PilJ compare
PP_0291 -1.5 -1.4 conserved protein of unknown function compare
PP_4699 -1.5 -2.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4265 -1.5 -3.8 DNA-binding transcriptional dual regulator compare
PP_2665 -1.5 -5.2 Glycerol metabolism activator compare
PP_1673 -1.4 -5.3 cobyrinate a,c-diamide synthase compare
PP_4364 -1.4 -4.0 putative Anti-sigma F factor antagonist compare
PP_4130 -1.4 -3.4 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4122 -1.4 -1.1 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0787 -1.4 -3.6 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5095 -1.3 -1.7 pyrroline-5-carboxylate reductase compare
PP_4131 -1.3 -4.6 NADH-quinone oxidoreductase subunit N compare
PP_2683 -1.3 -3.4 putative sensory box histidine kinase/response regulator compare
PP_3766 -1.3 -2.7 Lactoylglutathione lyase compare
PP_2302 -1.3 -4.2 DNA-binding, ATP-dependent protease compare
PP_2429 -1.3 -2.7 putative Membrane protein compare
PP_5114 -1.3 -1.6 putative adenine methyltransferase compare
PP_4008 -1.3 -4.1 ATP-dependent serine protease compare
PP_1428 -1.2 -1.1 Sigma factor AlgU negative regulatory protein compare
PP_1812 -1.2 -3.4 conserved protein of unknown function compare
PP_1303 -1.2 -4.8 Sulfate adenylyltransferase subunit 2 compare
PP_3467 -1.2 -4.8 Sigma-54 dependent transcriptional regulator compare
PP_2581 -1.2 -1.9 conserved protein of unknown function compare
PP_4009 -1.2 -3.9 ATP-dependent Clp protease adapter protein ClpS compare
PP_0048 -1.2 -1.3 conserved protein of unknown function compare
PP_4504 -1.2 -1.5 conserved exported protein of unknown function compare
PP_4977 -1.2 -5.7 5,10-methylenetetrahydrofolate reductase compare
PP_3756 -1.1 -3.8 TetR family transcriptional regulator compare
PP_3662 -1.1 -6.1 conserved protein of unknown function compare
PP_5748 -1.1 -1.8 cytochrome c heme lyase subunit compare
PP_3286 -1.1 -2.7 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_1656 -1.1 -5.8 ATP:GTP 3'-pyrophosphotransferase compare
PP_1664 -1.1 -2.5 phosphoribosylglycinamide formyltransferase 1 compare
PP_0365 -1.1 -6.1 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_2720 -1.1 -1.3 conserved protein of unknown function compare
PP_3052 -1.1 -1.4 conserved protein of unknown function compare
PP_5017 -1.1 -1.5 Sec-independent protein translocase protein TatB compare
PP_0366 -1.1 -4.4 dethiobiotin synthetase compare
PP_1404 -1.1 -1.7 conserved protein of unknown function compare
PP_4826 -1.1 -4.0 Precorrin-3B C17-methyltransferase compare
PP_2403 -1.1 -1.8 Chemotaxis protein CheY compare
PP_1237 -1.1 -1.6 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_5546 -1.1 -1.5 conserved protein of unknown function compare
PP_5227 -1.1 -4.7 diaminopimelate decarboxylase compare
PP_3505 -1.1 -2.4 conserved protein of unknown function compare
PP_2375 -1.0 -6.6 cobalamin-dependent methionine synthase compare
PP_1589 -1.0 -4.8 uridylyltransferase compare
PP_3234 -1.0 -2.3 Heat shock protein, HSP20 family compare
PP_4895 -1.0 -2.5 tRNA dimethylallyltransferase compare
PP_4124 -1.0 -3.1 NADH-quinone oxidoreductase subunit G compare
PP_0364 -1.0 -5.1 pimeloyl-[acp] methyl ester esterase compare
PP_5328 -1.0 -3.4 putative phosphate transport system permease protein compare
PP_5538 -1.0 -4.0 putative ABC transporter, substrate-binding protein compare
PP_3938 -1.0 -1.7 conserved protein of unknown function compare
PP_0122 -1.0 -1.8 conserved exported protein of unknown function compare
PP_0379 -1.0 -3.1 Coenzyme PQQ synthesis protein B compare
PP_0363 -1.0 -5.7 8-amino-7-oxononanoate synthase compare
PP_2615 -1.0 -1.9 hemolysin-coregulated protein compare
PP_3506 -1.0 -3.7 Magnesium chelatase, subunit ChII compare
PP_4830 -1.0 -2.9 precorrin-6Y C(5,15)-methyltransferase compare
PP_4984 -1.0 -5.7 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_1675 -1.0 -4.7 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_0362 -1.0 -5.7 Biotin synthase compare
PP_2669 -0.9 -3.3 putative Outer membrane protein compare
PP_1231 -0.9 -3.3 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_t10 -0.9 -1.3 tRNA-Pro compare
PP_3519 -0.9 -1.2 putative Lipoprotein compare
PP_5028 -0.9 -2.4 proline iminopeptidase compare
PP_4129 -0.9 -2.0 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_5035 -0.9 -2.9 Histidine utilization repressor compare
PP_5648 -0.9 -1.8 conserved exported protein of unknown function compare
PP_4546 -0.9 -2.6 ATP-dependent helicase HrpA compare
PP_5639 -0.9 -4.6 conserved exported protein of unknown function compare
PP_4121 -0.9 -2.8 NADH-quinone oxidoreductase subunit C/D compare
PP_3876 -0.9 -2.0 conserved protein of unknown function compare
PP_1410 -0.9 -1.1 conserved protein of unknown function compare
PP_4271 -0.9 -0.9 conserved protein of unknown function compare
PP_1114 -0.9 -3.3 SEC-C domain protein compare
PP_1808 -0.9 -2.4 glucose-6-phosphate isomerase compare
PP_2676 -0.9 -3.2 putative Periplasmic binding protein compare
PP_2203 -0.9 -1.7 conserved protein of unknown function compare
PP_3552 -0.9 -4.0 Sensory box histidine kinase compare
PP_2402 -0.9 -1.4 putative Sensor histidine kinase compare
PP_0368 -0.9 -4.7 putative Acyl-CoA dehydrogenase compare
PP_3508 -0.9 -2.6 Protein CobW compare
PP_2868 -0.9 -3.7 Transcriptional regulator, Cro/CI family compare
PP_2667 -0.9 -4.3 ABC transporter compare
PP_5533 -0.9 -1.2 conserved protein of unknown function compare
PP_2679 -0.9 -5.0 quinoprotein ethanol dehydrogenase compare
PP_3064 -0.9 -2.3 Phage tail protein compare
PP_3507 -0.9 -5.0 Aerobic cobaltochelatase subunit CobN compare
PP_3946 -0.9 -0.8 HTH-type transcriptional repressor NicR compare
PP_3892 -0.9 -1.3 conserved protein of unknown function compare
PP_1304 -0.9 -4.4 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_4693 -0.9 -2.3 RNA polymerase-binding transcription factor DksA compare
PP_1142 -0.9 -1.2 conserved protein of unknown function compare
PP_2032 -0.9 -3.6 putative ATPase compare
PP_1021 -0.8 -3.5 DNA-binding transcriptional regulator compare
PP_4273 -0.8 -1.2 Transcriptional regulator, MerR family compare
PP_1672 -0.8 -2.6 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_1716 -0.8 -1.8 Transcriptional regulator, Cro/CI family compare
PP_4988 -0.8 -3.6 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_1176 -0.8 -2.2 conserved protein of unknown function compare
PP_1676 -0.8 -2.8 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_1655 -0.8 -2.9 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_4779 -0.8 -6.5 AMP nucleosidase compare
PP_0794 -0.8 -1.9 1-phosphofructokinase monomer compare
PP_4480 -0.8 -3.6 arginine N-succinyltransferase, subunit alpha compare
PP_1387 -0.8 -1.5 Probable HTH-type transcriptional regulator TtgR compare
PP_2186 -0.8 -2.1 putative Formate dehydrogenase, delta subunit compare
PP_4260 -0.8 -2.8 conserved protein of unknown function compare
PP_3821 -0.8 -3.6 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4999 -0.8 -0.9 dihydroorotase-like protein compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source Butanol in Pseudomonas putida KT2440

For carbon source Butanol across organisms