Experiment set10IT050 for Pseudomonas simiae WCS417

Compare to:

rhizosphere sample 8; outgrowth in LB

200 most important genes:

  gene name fitness t score description  
PS417_27640 -5.1 -1.9 TetR family transcriptional regulator compare
PS417_14065 -5.0 -3.5 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_18595 -4.9 -4.6 3-isopropylmalate dehydratase compare
PS417_27040 -4.7 -2.6 3-phosphoglycerate dehydrogenase compare
PS417_24835 -4.4 -5.2 hypothetical protein compare
PS417_02510 -4.3 -5.6 ATP phosphoribosyltransferase regulatory subunit compare
PS417_23805 -4.2 -4.1 acetolactate synthase 3 regulatory subunit compare
PS417_03310 -4.1 -6.8 carbonate dehydratase compare
PS417_19425 -3.9 -1.4 allantoicase compare
PS417_23545 -3.9 -2.6 gamma-glutamyl kinase compare
PS417_04380 -3.8 -2.4 ABC transporter permease compare
PS417_26985 -3.7 -3.7 phosphoenolpyruvate-protein phosphotransferase compare
PS417_02975 -3.7 -5.5 3-dehydroquinate dehydratase compare
PS417_01575 -3.7 -5.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_22375 -3.6 -1.3 cold-shock protein compare
PS417_02720 -3.5 -1.3 TetR family transcriptional regulator compare
PS417_01915 -3.5 -1.3 ATP-dependent protease ATP-binding subunit HslU compare
PS417_01565 -3.5 -4.6 imidazole glycerol phosphate synthase compare
PS417_24710 -3.5 -5.5 lipoprotein compare
PS417_13305 -3.4 -1.7 hypothetical protein compare
PS417_23810 -3.4 -9.3 acetolactate synthase 3 catalytic subunit compare
PS417_01710 -3.3 -3.6 histidine utilization repressor compare
PS417_08155 -3.3 -1.9 integration host factor subunit beta compare
PS417_27865 -3.3 -3.3 LysR family transcriptional regulator compare
PS417_18600 -3.2 -2.7 isopropylmalate isomerase compare
PS417_09210 -3.2 -2.0 TetR family transcriptional regulator compare
PS417_23800 -3.1 -9.0 ketol-acid reductoisomerase compare
PS417_26890 -3.1 -5.1 dihydroxy-acid dehydratase compare
PS417_06730 -3.1 -1.5 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_02415 -3.0 -3.1 phosphoserine phosphatase compare
PS417_04875 -3.0 -1.5 molybdenum cofactor biosynthesis protein MoaE compare
PS417_08135 -3.0 -4.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_18585 -3.0 -4.9 3-isopropylmalate dehydrogenase compare
PS417_16005 -3.0 -3.3 ATPase compare
PS417_24745 -3.0 -2.1 gamma-glutamyl phosphate reductase compare
PS417_16555 -3.0 -2.1 cupin compare
PS417_13795 -2.9 -8.5 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_06375 -2.9 -1.1 deoxycytidine triphosphate deaminase compare
PS417_01855 -2.9 -2.9 phosphoribosyl-AMP cyclohydrolase compare
PS417_27245 -2.9 -2.8 aminotransferase DegT compare
PS417_16990 -2.8 -4.4 acyl-CoA dehydrogenase compare
PS417_04390 -2.8 -3.9 toluene tolerance protein compare
PS417_19675 -2.8 -4.5 chemotaxis protein CheY compare
PS417_04270 -2.7 -5.6 ribonuclease G compare
PS417_04420 -2.7 -7.6 histidinol dehydrogenase compare
PS417_01580 -2.7 -1.2 imidazole glycerol phosphate synthase compare
PS417_08125 -2.7 -1.0 prephenate dehydratase compare
PS417_27795 -2.7 -1.0 orotate phosphoribosyltransferase compare
PS417_03260 -2.6 -1.1 5S ribosomal RNA compare
PS417_06680 -2.6 -7.2 nuclease PIN compare
PS417_27800 -2.5 -4.2 exodeoxyribonuclease III compare
PS417_22450 -2.5 -1.5 ATP-dependent DNA helicase RuvA compare
PS417_23625 -2.5 -2.5 LysR family transcriptional regulator compare
PS417_17565 -2.5 -1.2 branched-chain amino acid aminotransferase compare
PS417_18530 -2.5 -6.2 O-succinylhomoserine sulfhydrylase compare
PS417_18390 -2.5 -6.0 LacI family transcriptional regulator compare
PS417_19840 -2.4 -9.3 flagellar cap protein FliD compare
PS417_00045 -2.4 -2.1 glycerol acyltransferase compare
PS417_07640 -2.4 -2.7 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_19860 -2.4 -10.3 flagellar hook protein FlgL compare
PS417_21510 -2.4 -2.1 histidine kinase compare
PS417_13820 -2.3 -5.5 UDP-glucose 6-dehydrogenase compare
PS417_06530 -2.3 -2.8 membrane protein compare
PS417_00175 -2.3 -1.2 CigR compare
PS417_07710 -2.3 -5.7 membrane protein compare
PS417_11825 -2.3 -2.9 transcriptional regulator compare
PS417_04415 -2.2 -5.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_27195 -2.2 -1.1 N-acetylglutamate synthase compare
PS417_18560 -2.2 -5.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_22565 -2.1 -0.8 formyltetrahydrofolate deformylase compare
PS417_19880 -2.1 -6.5 flagellar basal body L-ring protein compare
PS417_20635 -2.1 -1.1 ABC transporter ATP-binding protein compare
PS417_01560 -2.1 -2.0 imidazoleglycerol-phosphate dehydratase compare
PS417_16510 -2.1 -2.9 Clp protease ClpX compare
PS417_19730 -2.1 -1.7 flagellar biosynthesis protein FliR compare
PS417_27305 -2.1 -7.5 5-formyltetrahydrofolate cyclo-ligase compare
PS417_24525 -2.1 -2.1 nuclease compare
PS417_23370 -2.1 -3.0 protoheme IX farnesyltransferase compare
PS417_13790 -2.1 -3.3 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_23770 -2.1 -1.4 exodeoxyribonuclease V subunit alpha compare
PS417_22445 -2.1 -3.1 ATP-dependent DNA helicase RuvB compare
PS417_04340 -2.0 -4.7 ribosome hibernation promoting factor HPF compare
PS417_06540 -2.0 -1.7 membrane protein compare
PS417_21000 -2.0 -1.8 CrfX protein compare
PS417_11075 -2.0 -3.3 hydroxypyruvate isomerase compare
PS417_07560 -2.0 -1.1 universal stress protein UspA compare
PS417_04365 -2.0 -1.0 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_24800 -2.0 -4.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_24115 -1.9 -1.3 hypothetical protein compare
PS417_02005 -1.9 -6.4 glutamate synthase compare
PS417_19335 -1.9 -2.1 isochorismatase compare
PS417_21585 -1.9 -6.7 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_26740 -1.9 -4.5 homoserine acetyltransferase compare
PS417_08170 -1.9 -6.9 capsular biosynthesis protein compare
PS417_21595 -1.9 -4.0 flagellar biosynthesis protein FlgN compare
PS417_23380 -1.8 -1.8 cytochrome o ubiquinol oxidase subunit III compare
PS417_21555 -1.8 -7.3 flagellar hook protein FlgE compare
PS417_12390 -1.8 -1.9 hypothetical protein compare
PS417_23375 -1.8 -1.6 cytochrome C oxidase compare
PS417_26730 -1.8 -0.9 pyrroline-5-carboxylate reductase compare
PS417_01620 -1.8 -2.2 preprotein translocase subunit SecB compare
PS417_23775 -1.8 -1.5 exodeoxyribonuclease V subunit beta compare
PS417_15770 -1.8 -1.1 pyridoxine 5'-phosphate oxidase compare
PS417_10405 -1.8 -1.1 filamentous hemagglutinin compare
PS417_22780 -1.8 -2.6 XRE family transcriptional regulator compare
PS417_04595 -1.8 -2.1 cell division protein MraZ compare
PS417_27595 -1.8 -2.1 recombinase XerC compare
PS417_15495 -1.8 -2.3 FAD-dependent oxidoreductase compare
PS417_26230 -1.7 -3.0 electron transfer flavoprotein subunit alpha compare
PS417_16000 -1.7 -1.8 chemotaxis protein CheY compare
PS417_20655 -1.7 -6.4 group 1 glycosyl transferase compare
PS417_02000 -1.7 -7.3 glutamate synthase compare
PS417_05815 -1.7 -3.4 recombinase RecA compare
PS417_12695 -1.7 -3.4 mannitol dehydrogenase compare
PS417_13510 -1.7 -1.0 polyketide cyclase compare
PS417_19865 -1.7 -5.2 flagellar hook protein FlgK compare
PS417_12035 -1.6 -2.1 dihydroxyacetone kinase compare
PS417_18425 -1.6 -1.3 sporulation protein compare
PS417_13140 -1.6 -1.6 oxidoreductase compare
PS417_19850 -1.6 -5.4 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_00180 -1.6 -1.1 tryptophan synthase subunit alpha compare
PS417_19725 -1.6 -4.7 flagellar biosynthesis protein FlhB compare
PS417_19705 -1.6 -2.0 flagellar biosynthesis regulator FlhF compare
PS417_27870 -1.6 -2.7 ATP-dependent DNA helicase RecG compare
PS417_19745 -1.6 -3.4 flagellar assembly protein FliO compare
PS417_17840 -1.6 -2.2 betaine-aldehyde dehydrogenase compare
PS417_21425 -1.6 -1.4 4-amino-4-deoxychorismate lyase compare
PS417_08410 -1.6 -1.9 hypothetical protein compare
PS417_21125 -1.6 -3.9 phosphoadenosine phosphosulfate reductase compare
PS417_13800 -1.6 -1.5 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_01115 -1.6 -1.4 serine acetyltransferase compare
PS417_19655 -1.5 -3.9 chemotaxis protein CheW compare
PS417_05785 -1.5 -4.2 tail protein compare
PS417_06095 -1.5 -1.2 energy transducer TonB compare
PS417_18105 -1.5 -0.8 iron-dicitrate transporter substrate-binding subunit compare
PS417_01270 -1.5 -1.2 iron ABC transporter substrate-binding protein compare
PS417_25725 -1.5 -6.8 anthranilate synthase component I compare
PS417_25720 -1.5 -5.0 anthranilate synthase component II compare
PS417_00300 -1.5 -5.1 cytochrome B559 subunit alpha compare
PS417_21630 -1.5 -2.0 magnesium transporter compare
PS417_19765 -1.5 -4.3 flagellar hook-length control protein compare
PS417_25790 -1.5 -2.5 aminoglycoside phosphotransferase compare
PS417_13245 -1.5 -2.4 saccharopine dehydrogenase compare
PS417_23110 -1.5 -4.6 2-isopropylmalate synthase compare
PS417_19685 -1.5 -4.7 protein phosphatase compare
PS417_27705 -1.5 -1.2 amino acid dehydrogenase compare
PS417_05595 -1.5 -2.0 ornithine carbamoyltransferase compare
PS417_19735 -1.4 -3.5 flagellar biosynthesis protein FliQ compare
PS417_22690 -1.4 -2.5 phosphogluconate dehydratase compare
PS417_14920 -1.4 -3.2 CoA-transferase compare
PS417_06500 -1.4 -1.0 hypothetical protein compare
PS417_26995 -1.4 -4.9 phosphoserine phosphatase compare
PS417_25650 -1.4 -1.7 anhydro-N-acetylmuramic acid kinase compare
PS417_19710 -1.4 -6.1 flagellar biosynthesis protein FlhA compare
PS417_14595 -1.4 -2.0 pyrroline-5-carboxylate reductase compare
PS417_07565 -1.4 -1.4 hypothetical protein compare
PS417_02865 -1.4 -2.6 peptidase compare
PS417_25645 -1.4 -3.2 peptidase M23 compare
PS417_26510 -1.4 -5.5 5,10-methylenetetrahydrofolate reductase compare
PS417_27155 -1.3 -1.1 aliphatic sulfonates transport ATP-binding subunit compare
PS417_01510 -1.3 -1.4 hypothetical protein compare
PS417_21565 -1.3 -2.4 flagellar basal body rod protein FlgC compare
PS417_23385 -1.3 -4.6 cytochrome o ubiquinol oxidase subunit I compare
PS417_23995 -1.3 -0.7 preprotein translocase subunit SecG compare
PS417_05100 -1.3 -1.4 RNA polymerase sigma factor compare
PS417_27535 -1.3 -3.9 chemotaxis protein CheY compare
PS417_01850 -1.3 -3.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_23915 -1.3 -2.5 pantoate--beta-alanine ligase compare
PS417_13805 -1.3 -4.9 4-amino-4-deoxy-L-arabinose transferase compare
PS417_05200 -1.3 -1.7 DNA recombination protein RecO compare
PS417_25835 -1.3 -6.2 hypothetical protein compare
PS417_26815 -1.3 -1.5 peptidase M16 compare
PS417_26745 -1.3 -2.5 methionine biosynthesis protein MetW compare
PS417_12855 -1.3 -2.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_00185 -1.3 -1.9 tryptophan synthase subunit beta compare
PS417_18040 -1.3 -1.2 general secretion pathway protein GspN compare
PS417_19690 -1.3 -2.7 histidine kinase compare
PS417_26645 -1.3 -1.9 chemotaxis protein compare
PS417_21355 -1.3 -1.7 hypothetical protein compare
PS417_24500 -1.3 -1.8 DEAD/DEAH box helicase compare
PS417_19885 -1.2 -1.5 flagellar basal body rod protein FlgG compare
PS417_01955 -1.2 -4.9 peptidase compare
PS417_20040 -1.2 -2.8 cobyric acid synthase compare
PS417_11440 -1.2 -1.2 hypothetical protein compare
PS417_04410 -1.2 -1.4 hypothetical protein compare
PS417_14655 -1.2 -0.9 lysine transporter LysE compare
PS417_02950 -1.2 -1.3 tRNA-dihydrouridine synthase B compare
PS417_00660 -1.2 -1.8 DSBA oxidoreductase compare
PS417_26465 -1.2 -1.4 hypothetical protein compare
PS417_19415 -1.2 -2.3 allantoinase compare
PS417_12175 -1.2 -2.3 peptide ABC transporter permease compare
PS417_17240 -1.2 -2.5 trigger factor compare
PS417_14835 -1.2 -3.8 amidase compare
PS417_18860 -1.2 -4.1 transcriptional regulator compare
PS417_17645 -1.2 -1.4 RND transporter compare
PS417_12840 -1.2 -2.3 TetR family transcriptional regulator compare
PS417_19835 -1.2 -1.0 flagellar biosynthesis protein FliS compare
PS417_25895 -1.2 -1.4 glyoxalase compare
PS417_07170 -1.1 -3.0 hypothetical protein compare
PS417_06175 -1.1 -3.3 cysteine sulfinate desulfinase compare


Specific Phenotypes

For 11 genes in this experiment