Experiment set10IT050 for Pseudomonas putida KT2440

Compare to:

Ethanol carbon source

200 most important genes:

  gene name fitness t score description  
PP_5014 -5.0 -4.9 Phosphoribosyl-AMP cyclohydrolase compare
PP_0293 -4.7 -4.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_3511 -4.6 -11.1 Branched-chain-amino-acid aminotransferase compare
PP_4678 -4.3 -16.8 Ketol-acid reductoisomerase compare
PP_4679 -4.2 -8.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5659 -4.0 -6.0 protein of unknown function compare
PP_0691 -3.8 -5.8 Glutamate 5-kinase compare
PP_0290 -3.8 -8.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4116 -3.7 -12.9 isocitrate lyase compare
PP_0083 -3.7 -8.9 tryptophan synthase beta chain compare
PP_0422 -3.7 -7.4 Indole-3-glycerol phosphate synthase compare
PP_2371 -3.6 -8.1 Sulphite reductase hemoprotein, beta subunit compare
PP_4696 -3.5 -6.5 Nitrogen regulation protein NR(I) compare
PP_5128 -3.5 -8.0 Dihydroxy-acid dehydratase compare
PP_0082 -3.5 -7.5 tryptophan synthase alpha chain compare
PP_0967 -3.5 -9.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1986 -3.4 -4.6 3-isopropylmalate dehydratase small subunit compare
PP_0966 -3.4 -8.9 Histidinol dehydrogenase compare
PP_1079 -3.3 -6.5 Ornithine carbamoyltransferase compare
PP_1988 -3.3 -8.6 3-isopropylmalate dehydrogenase compare
PP_1985 -3.3 -4.2 3-isopropylmalate dehydratase large subunit compare
PP_3999 -3.2 -9.4 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0356 -2.9 -8.1 malate synthase G compare
PP_1088 -2.9 -11.2 Argininosuccinate synthase compare
PP_4700 -2.9 -3.9 pantothenate synthetase compare
PP_0292 -2.9 -3.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_2327 -2.8 -7.5 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4680 -2.8 -11.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5185 -2.8 -5.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0965 -2.8 -9.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4890 -2.8 -5.4 ATP phosphoribosyltransferase regulatory subunit compare
PP_1995 -2.7 -8.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0289 -2.7 -5.4 Imidazoleglycerol-phosphate dehydratase compare
PP_0377 -2.6 -2.1 coenzyme PQQ synthesis protein D compare
PP_0421 -2.5 -6.8 Anthranilate phosphoribosyltransferase compare
PP_4487 -2.5 -15.3 acetyl-CoA synthetase conserved
PP_0420 -2.5 -8.9 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5097 -2.4 -10.7 homoserine O-acetyltransferase compare
PP_2001 -2.4 -7.8 O-succinylhomoserine sulfhydrylase compare
PP_0417 -2.3 -12.3 Anthranilate synthase component 1 compare
PP_5098 -2.2 -6.9 methionine biosynthesis protein MetW compare
PP_1025 -2.2 -9.3 2-isopropylmalate synthase compare
PP_0630 -2.1 -1.7 DNA gyrase inhibitor YacG compare
PP_2370 -2.1 -3.1 conserved protein of unknown function compare
PP_0888 -2.0 -2.7 Photosynthetic apparatus regulatory protein RegA compare
PP_0184 -2.0 -5.3 Argininosuccinate lyase compare
PP_1142 -1.9 -2.1 conserved protein of unknown function compare
PP_0719 -1.9 -1.3 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_5227 -1.9 -7.9 diaminopimelate decarboxylase compare
PP_2665 -1.8 -4.9 Glycerol metabolism activator compare
PP_5533 -1.8 -2.0 conserved protein of unknown function compare
PP_0048 -1.8 -1.8 conserved protein of unknown function compare
PP_0381 -1.8 -6.6 Coenzyme PQQ synthesis protein F compare
PP_5289 -1.7 -2.1 Acetylglutamate kinase compare
PP_5015 -1.7 -2.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_2168 -1.6 -6.7 Transaldolase compare
PP_1231 -1.6 -4.6 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4124 -1.6 -3.9 NADH-quinone oxidoreductase subunit G compare
PP_5346 -1.6 -8.6 pyruvate carboxylase subunit B compare
PP_2328 -1.5 -4.1 Phosphoadenosine phosphosulfate reductase compare
PP_0164 -1.5 -5.2 conserved protein of unknown function compare
PP_4364 -1.5 -3.4 putative Anti-sigma F factor antagonist compare
PP_4120 -1.5 -3.2 NADH-quinone oxidoreductase subunit B compare
PP_1097 -1.4 -1.6 Methionine--tRNA ligase compare
PP_4909 -1.4 -4.9 phosphoserine phosphatase compare
PP_1783 -1.4 -0.9 dTDP-glucose pyrophosphorylase compare
PP_5217 -1.4 -9.8 Polyphosphate kinase compare
PP_4271 -1.4 -1.3 conserved protein of unknown function compare
PP_4724 -1.4 -5.8 Carbamoyl-phosphate synthase small chain compare
PP_3662 -1.3 -7.8 conserved protein of unknown function compare
PP_4999 -1.3 -1.8 dihydroorotase-like protein compare
PP_0378 -1.3 -5.8 Pyrroloquinoline-quinone synthase compare
PP_5347 -1.3 -6.0 pyruvate carboxylase subunit A compare
PP_4254 -1.3 -1.2 conserved protein of unknown function compare
PP_0787 -1.2 -4.6 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4828 -1.2 -1.7 Precorrin-8X methylmutase compare
PP_3245 -1.2 -1.5 conserved protein of unknown function compare
PP_5303 -1.2 -3.8 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1176 -1.2 -3.1 conserved protein of unknown function compare
PP_1734 -1.2 -2.4 Probable septum site-determining protein MinC compare
PP_4989 -1.2 -2.0 Protein PilJ compare
PP_4895 -1.2 -2.6 tRNA dimethylallyltransferase compare
PP_5216 -1.2 -2.9 exopolyphosphatase compare
PP_3946 -1.2 -1.0 HTH-type transcriptional repressor NicR compare
PP_0291 -1.1 -1.1 conserved protein of unknown function compare
PP_1994 -1.1 -1.3 tRNA pseudouridine (38-40)synthase compare
PP_0379 -1.1 -4.3 Coenzyme PQQ synthesis protein B compare
PP_4701 -1.1 -1.1 glucose-6-phosphate isomerase compare
PP_0122 -1.1 -2.0 conserved exported protein of unknown function compare
PP_1664 -1.1 -2.6 phosphoribosylglycinamide formyltransferase 1 compare
PP_4723 -1.1 -7.0 Carbamoyl-phosphate synthase large chain compare
PP_5232 -1.1 -2.3 conserved protein of unknown function compare
PP_4131 -1.1 -4.1 NADH-quinone oxidoreductase subunit N compare
PP_2675 -1.1 -2.5 Cytochrome c-type protein compare
PP_4695 -1.1 -5.0 Sensory box histidine kinase compare
PP_3506 -1.1 -2.8 Magnesium chelatase, subunit ChII compare
PP_2388 -1.1 -3.4 Transporter, LysE family compare
PP_1679 -1.1 -2.6 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_4129 -1.1 -2.2 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_0376 -1.1 -4.1 Coenzyme PQQ synthesis protein E compare
PP_1672 -1.0 -3.1 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_2682 -1.0 -2.5 Fe-containing alcohol dehydrogenase compare
PP_1589 -1.0 -5.2 uridylyltransferase compare
PP_3730 -1.0 -2.5 Transcriptional regulatory protein AruR compare
PP_1310 -1.0 -3.2 conserved hypothetical protein compare
PP_0914 -1.0 -5.8 GGDEF domain protein compare
PP_0152 -1.0 -1.5 conserved exported protein of unknown function compare
PP_5017 -1.0 -1.5 Sec-independent protein translocase protein TatB compare
PP_4532 -1.0 -1.1 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_5198 -1.0 -1.5 conserved protein of unknown function compare
PP_1676 -1.0 -4.0 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_1632 -1.0 -1.7 conserved protein of unknown function compare
PP_4707 -1.0 -1.6 OsmY-related protein compare
PP_0313 -0.9 -1.6 putative electron transfer flavoprotein beta subunit compare
PP_5748 -0.9 -1.5 cytochrome c heme lyase subunit compare
PP_3484 -0.9 -4.3 Response regulator receiver protein compare
PP_2683 -0.9 -3.7 putative sensory box histidine kinase/response regulator compare
PP_4964 -0.9 -2.2 D-erythrose 4-phosphate dehydrogenase compare
PP_5324 -0.9 -1.8 Response regulator compare
PP_2390 -0.9 -4.8 Transcriptional regulator, LysR family compare
PP_0362 -0.9 -5.9 Biotin synthase compare
PP_0393 -0.9 -1.6 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_3052 -0.9 -1.3 conserved protein of unknown function compare
PP_1673 -0.9 -2.9 cobyrinate a,c-diamide synthase compare
PP_2631 -0.9 -1.0 putative cellulose biosynthesis, BcsF/YhjT compare
PP_5456 -0.9 -1.4 conserved protein of unknown function compare
PP_1366 -0.9 -1.2 Transcriptional regulator MvaT, P16 subunit compare
PP_0127 -0.9 -3.1 Thiol:disulfide interchange protein compare
PP_1303 -0.8 -4.2 Sulfate adenylyltransferase subunit 2 compare
PP_4827 -0.8 -5.1 Precorrin-2 C(20)-methyltransferase compare
PP_0607 -0.8 -2.1 putative Type IV pili biogenesis protein FimT compare
PP_2414 -0.8 -1.6 conserved exported protein of unknown function compare
PP_1826 -0.8 -1.5 Hydrolase, isochorismatase family compare
PP_3434 -0.8 -2.2 conserved protein of unknown function compare
PP_t11 -0.8 -1.9 tRNA-Lys compare
PP_4993 -0.8 -2.7 Glutathione synthetase compare
PP_5473 -0.8 -1.7 putative transcriptional regulator, LuxR family compare
PP_1678 -0.8 -1.7 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_1845 -0.8 -1.8 Enoyl-CoA hydratase/isomerase family protein compare
PP_4832 -0.8 -2.0 Precorrin-6x reductase compare
PP_4320 -0.8 -3.0 cytochrome c-type biogenesis protein compare
PP_5639 -0.8 -4.5 conserved exported protein of unknown function compare
PP_0380 -0.8 -2.6 Coenzyme PQQ synthesis protein A compare
PP_3507 -0.8 -5.2 Aerobic cobaltochelatase subunit CobN compare
PP_2054 -0.8 -1.8 putative DNA-binding transcriptional regulator compare
PP_1770 -0.8 -2.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_0269 -0.7 -3.5 putative Glutamate synthase, large subunit compare
PP_2222 -0.7 -3.4 conserved protein of unknown function compare
PP_3110 -0.7 -2.0 protein of unknown function compare
PP_5583 -0.7 -1.2 conserved protein of unknown function compare
PP_5674 -0.7 -2.0 conserved protein of unknown function compare
PP_0352 -0.7 -3.5 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_2087 -0.7 -1.4 CmpX protein compare
PP_5448 -0.7 -2.4 conserved protein of unknown function compare
PP_1675 -0.7 -4.2 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_4593 -0.7 -1.2 conserved protein of unknown function compare
PP_4681 -0.7 -1.3 conserved protein of unknown function compare
PP_5052 -0.7 -1.7 tRNA(Leu) mC34,mU34 2'-O-ribose methyltransferase, AdoMet-dependent compare
PP_2044 -0.7 -1.5 conserved inner membrane protein of unknown function compare
PP_4988 -0.7 -2.7 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_2676 -0.7 -3.9 putative Periplasmic binding protein compare
PP_5095 -0.7 -0.8 pyrroline-5-carboxylate reductase compare
PP_4830 -0.7 -2.7 precorrin-6Y C(5,15)-methyltransferase compare
PP_0364 -0.7 -3.7 pimeloyl-[acp] methyl ester esterase compare
PP_4693 -0.7 -2.2 RNA polymerase-binding transcription factor DksA compare
PP_3766 -0.7 -1.2 Lactoylglutathione lyase compare
PP_3906 -0.7 -1.6 conserved protein of unknown function compare
PP_1677 -0.7 -3.4 Adenosyl-cobyric acid synthase compare
PP_5039 -0.7 -1.8 conserved protein of unknown function compare
PP_4130 -0.7 -1.7 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4977 -0.7 -4.3 5,10-methylenetetrahydrofolate reductase compare
PP_3037 -0.7 -2.0 C4-type zinc finger protein, DksA/TraR family compare
PP_4826 -0.7 -2.6 Precorrin-3B C17-methyltransferase compare
PP_5348 -0.7 -3.6 Transcriptional regulator, LysR family compare
PP_1654 -0.7 -1.5 cysteine synthase B compare
PP_2931 -0.7 -1.4 conserved protein of unknown function compare
PP_0087 -0.7 -1.9 conserved exported protein of unknown function compare
PP_1038 -0.7 -1.6 conserved protein of unknown function compare
PP_0365 -0.6 -3.3 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_1051 -0.6 -2.4 Type II secretion pathway protein XcpV compare
PP_3481 -0.6 -1.5 conserved exported protein of unknown function compare
PP_5502 -0.6 -2.8 ribosome modulation factor compare
PP_3185 -0.6 -2.1 Pet18 protein compare
PP_4008 -0.6 -2.6 ATP-dependent serine protease compare
PP_0250 -0.6 -1.4 heat shock protein Hsp15 involved in ribosome recycling compare
PP_4940 -0.6 -2.5 Putative glycosyltransferase compare
PP_5274 -0.6 -1.0 conserved protein of unknown function compare
PP_4722 -0.6 -1.9 Transcription elongation factor GreA compare
PP_2680 -0.6 -2.0 aldehyde dehydrogenase compare
PP_4829 -0.6 -2.1 putative precorrin-3B synthase compare
PP_5SB -0.6 -1.2 5S ribosomal RNA compare
PP_1291 -0.6 -3.4 PhoH family protein compare
PP_2402 -0.6 -1.0 putative Sensor histidine kinase compare
PP_4870 -0.6 -1.3 Azurin compare
PP_4214 -0.6 -1.8 pyoverdine biosynthesis related protein compare
PP_2290 -0.6 -2.0 conserved protein of unknown function compare
PP_0065 -0.6 -1.5 NAD-binding component of TrK potassium transporter compare
PP_5331 -0.6 -2.6 Long-chain acyl-CoA thioester hydrolase compare
PP_1008 -0.6 -2.0 RNA polymerase subunit sigma-24 compare
PP_3234 -0.6 -2.2 Heat shock protein, HSP20 family compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Ethanol in Pseudomonas putida KT2440

For carbon source Ethanol across organisms