Experiment set10IT049 for Pseudomonas putida KT2440

Compare to:

D-Fructose carbon source

200 most detrimental genes:

  gene name fitness t score description  
PP_0547 +4.4 22.2 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_0138 +3.4 24.5 conserved membrane protein of unknown function compare
PP_0406 +3.4 28.9 Nucleotidyltransferase family protein compare
PP_1778 +3.1 13.4 Lipopolysaccharide ABC export system, permease protein compare
PP_1623 +2.8 21.0 RNA polymerase, sigma S (sigma 38) factor compare
PP_1779 +2.7 13.4 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_4994 +2.2 10.9 conserved protein of unknown function compare
PP_1804 +1.9 10.0 Glycosyl transferase WbpL compare
PP_3821 +1.6 10.1 UTP-glucose-1-phosphate uridylyltransferase compare
PP_1269 +1.5 2.0 Universal stress protein family compare
PP_0276 +1.4 2.4 Transcriptional regulator, Cro/CI family compare
PP_0001 +1.3 1.8 probable chromosome-partitioning protein compare
PP_4910 +1.3 1.5 conserved protein of unknown function compare
PP_5145 +1.3 11.9 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_1912 +1.2 4.6 Phosphate acyltransferase compare
PP_4785 +1.2 9.2 conserved exported protein of unknown function compare
PP_3245 +1.2 1.0 conserved protein of unknown function compare
PP_4961 +1.1 1.9 putative Lipoprotein compare
PP_1293 +1.1 1.4 molybdopterin synthase small subunit compare
PP_1776 +1.1 10.0 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_0022 +1.1 1.6 hypothetical protein compare
PP_1777 +1.1 6.7 phosphomannomutase compare
PP_4940 +1.1 6.6 Putative glycosyltransferase compare
PP_1454 +1.1 2.1 conserved protein of unknown function compare
PP_1198 +1.1 2.6 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_5582 +1.1 1.9 conserved protein of unknown function compare
PP_0792 +1.1 3.9 catabolite repressor-activator, DNA-binding transcriptional dual regulator compare
PP_1058 +1.1 8.8 conserved protein of unknown function compare
PP_1799 +1.0 8.0 GDP-mannose 4,6-dehydratase compare
PP_1578 +1.0 6.0 conserved protein of unknown function compare
PP_3903 +1.0 2.2 conserved protein of unknown function compare
PP_4204 +1.0 3.5 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_2499 +1.0 1.4 conserved protein of unknown function compare
PP_3902 +1.0 1.5 conserved protein of unknown function compare
PP_4938 +1.0 5.9 putative Glycosyl transferase compare
PP_1898 +1.0 3.2 MotA/TolQ/ExbB proton channel family protein compare
PP_1829 +1.0 3.1 Hydrolase, alpha/beta fold family compare
PP_0025 +1.0 1.7 hypothetical protein compare
PP_1575 +0.9 3.0 conserved protein of unknown function compare
PP_1045 +0.9 2.2 Type II secretion pathway protein XcpP compare
PP_0846 +0.9 1.3 DnaK-like molecular chaperone specific for IscU compare
PP_4099 +0.9 7.9 two-componenent system BarA/UvrY - regulatory subunit compare
PP_5654 +0.9 2.2 putative phosphotriesterase compare
PP_4814 +0.9 2.2 ATP-dependent protease La domain protein compare
PP_1805 +0.9 8.3 Polysaccharide biosynthesis protein compare
PP_4143 +0.9 3.7 conserved protein of unknown function compare
PP_0948 +0.9 2.7 Phosphocarrier protein HPr compare
PP_1215 +0.9 0.8 Crossover junction endodeoxyribonuclease RuvC compare
PP_2526 +0.9 2.2 conserved membrane protein of unknown function compare
PP_4891 +0.9 3.5 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_0191 +0.9 2.3 Transcriptional regulatory protein AlgQ compare
PP_2681 +0.9 2.1 coenzyme PQQ synthesis protein D compare
PP_4098 +0.9 1.9 UvrABC system protein C compare
PP_1803 +0.9 6.7 UDP-sugar epimerase compare
PP_3248 +0.9 2.7 Dyp-type peroxidase family protein compare
PP_0195 +0.9 1.9 conserved protein of unknown function compare
PP_4936 +0.9 4.0 O-antigen polymerase compare
PP_1355 +0.9 7.9 Muropeptide permease AmpG compare
PP_1801 +0.8 6.7 Glycosyl transferase WbpY compare
PP_5475 +0.8 1.7 conserved protein of unknown function compare
PP_0852 +0.8 2.1 Transcriptional regulator, Cro/CI family compare
PP_1584 +0.8 2.9 conserved protein of unknown function compare
PP_2972 +0.8 2.0 conserved protein of unknown function compare
PP_5083 +0.8 3.9 putative Type IV pili biogenesis protein PilM compare
PP_2322 +0.8 5.2 Major outer membrane lipoprotein compare
PP_1800 +0.8 5.9 Oxidoreductase Rmd compare
PP_1548 +0.8 1.2 conserved protein of unknown function compare
PP_3398 +0.8 1.1 putative Curli fiber surface-exposed nucleator CsgB compare
PP_1208 +0.8 1.4 conserved protein of unknown function, SlyX family compare
PP_1353 +0.8 1.8 conserved membrane protein of unknown function compare
PP_1466 +0.8 2.6 Long-chain acyl-CoA thioester hydrolase family protein compare
PP_4917 +0.8 2.3 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_4943 +0.8 1.4 putative Glycosyl transferase compare
PP_1650 +0.8 7.5 Sensor protein GacS compare
PP_1325 +0.8 4.2 putative lipoprotein compare
PP_4561 +0.8 1.1 stress response protein compare
PP_1780 +0.8 7.0 putative mannosyltransferase compare
PP_1048 +0.8 2.7 putative protein secretion protein for export compare
PP_2748 +0.8 2.1 putative Branched-chain amino acid ABC transporter, ATP-binding protein compare
PP_1713 +0.8 1.3 Transcriptional regulator PcaQ compare
PP_2144 +0.8 2.4 Transcriptional regulator, TetR family compare
PP_2307 +0.8 1.1 conserved protein of unknown function compare
PP_5114 +0.8 1.4 putative adenine methyltransferase compare
PP_5569 +0.7 2.7 protein of unknown function of phage origin compare
PP_1111 +0.7 4.3 putative Synthetase compare
PP_4609 +0.7 3.1 conserved membrane protein of unknown function compare
PP_0307 +0.7 1.3 conserved exported protein of unknown function compare
PP_5058 +0.7 2.4 Carboxy-terminal-processing protease compare
PP_0003 +0.7 1.8 16S RNA methyltransferase compare
PP_2323 +0.7 5.3 conserved protein of unknown function compare
PP_3323 +0.7 3.4 CobW/P47K family protein compare
PP_0152 +0.7 1.2 conserved exported protein of unknown function compare
PP_1802 +0.7 6.0 glycosyl transferase compare
PP_2959 +0.7 2.8 Alkylhydroperoxidase AhpD domain protein compare
PP_4150 +0.7 2.5 microcin C transporter - ATP binding subunit compare
PP_5310 +0.7 3.1 junction-specific ATP-dependent DNA helicase compare
PP_0962 +0.7 1.5 toluene-tolerance protein compare
PP_4171 +0.7 5.9 conserved exported protein of unknown function compare
PP_2320 +0.7 5.6 conserved exported protein of unknown function compare
PP_0355 +0.7 4.0 Response regulator compare
PP_3318 +0.7 1.4 conserved protein of unknown function compare
PP_3265 +0.7 2.6 putative phosphohydrolase of unknown function compare
PP_1026 +0.7 1.5 Peptidase, M23/M37 family compare
PP_1224 +0.7 3.3 periplasmic subunit of the TolQRA transport system compare
PP_1572 +0.7 3.4 conserved protein of unknown function compare
PP_4803 +0.7 4.4 D-alanyl-D-alanine carboxypeptidase compare
PP_3908 +0.7 1.6 conserved protein of unknown function compare
PP_4367 +0.7 3.6 Flagellar assembly protein FliH compare
PP_1733 +0.7 1.6 membrane ATPase of the MinC-MinD-MinE system compare
PP_1206 +0.7 4.0 basic-amino-acid specific porin OprD compare
PP_3594 +0.7 3.0 L-lysine and D-lysine ABC transporter, permease component 1 (from data) compare
PP_5706 +0.7 1.1 Sec translocation complex - SecG subunit compare
PP_4660 +0.7 1.1 Transcriptional regulator, LysR family compare
PP_1109 +0.7 5.0 Transcriptional regulator, GntR family compare
PP_4482 +0.7 1.6 Transcriptional regulator, AraC family compare
PP_3243 +0.6 1.8 Acetyltransferase, GNAT family compare
PP_4769 +0.6 2.8 conserved protein of unknown function compare
PP_1553 +0.6 1.1 conserved protein of unknown function compare
PP_2101 +0.6 1.7 DNA-binding response regulator in two-component regulatory system with EvgS compare
PP_3810 +0.6 1.0 conserved protein of unknown function compare
PP_4941 +0.6 3.4 conserved exported protein of unknown function compare
PP_3971 +0.6 0.9 conserved protein of unknown function compare
PP_5714 +0.6 2.1 conserved protein of unknown function compare
PP_0123 +0.6 2.8 DNA polymerase I, 5 compare
PP_0508 +0.6 1.2 conserved exported protein of unknown function compare
PP_2568 +0.6 0.7 Ring-cleaving dioxygenase compare
PP_2253 +0.6 1.6 Transcriptional regulator, GntR family compare
PP_5667 +0.6 1.5 putative microcin B17-like-processing protein, McbC family compare
PP_1787 +0.6 2.2 conserved protein of unknown function compare
PP_5572 +0.6 1.3 protein of unknown function compare
PP_2054 +0.6 1.8 putative DNA-binding transcriptional regulator compare
PP_4789 +0.6 2.3 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_0396 +0.6 4.8 conserved protein of unknown function compare
PP_0125 +0.6 2.5 putative cytochrome c-type protein compare
PP_3715 +0.6 1.4 Muconate cycloisomerase 1 compare
PP_4069 +0.6 1.4 conserved protein of unknown function compare
PP_0770 +0.6 2.5 PemI-like protein compare
PP_1582 +0.6 4.5 conserved protein of unknown function compare
PP_0395 +0.6 4.5 putative type IV piliation protein compare
PP_1577 +0.6 4.6 Phage tail tape meausure protein, lambda family compare
PP_5027 +0.6 0.7 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_5448 +0.6 2.6 conserved protein of unknown function compare
PP_2773 +0.6 0.8 conserved protein of unknown function compare
PP_4365 +0.6 2.0 Flagellar protein FliJ compare
PP_5248 +0.6 1.2 putative hydrolase compare
PP_4517 +0.6 1.4 conserved protein of unknown function compare
PP_0630 +0.6 0.8 DNA gyrase inhibitor YacG compare
PP_2611 +0.6 2.3 membrane protein of unknown function compare
PP_1564 +0.6 2.2 conserved exported protein of unknown function compare
PP_5670 +0.6 2.7 conserved protein of unknown function compare
PP_2226 +0.6 1.7 putative K(+)/H(+) antiporter subunit F compare
PP_4738 +0.6 1.4 conserved exported protein of unknown function compare
PP_0397 +0.6 4.6 protein kinase compare
PP_5313 +0.6 0.8 DNA-binding protein HU-alpha compare
PP_1580 +0.6 3.4 conserved protein of unknown function compare
PP_0616 +0.6 1.7 Branched-chain amino acid ABC transporter, ATP binding protein compare
PP_1999 +0.6 1.7 membrane protein required for colicin V production compare
PP_1528 +0.5 0.9 conserved protein of unknown function compare
PP_0135 +0.5 1.8 conserved exported protein of unknown function compare
PP_4036 +0.5 2.5 D-hydantoinase/dihydropyrimidinase compare
PP_1579 +0.5 4.4 conserved protein of unknown function compare
PP_2547 +0.5 2.3 Transcriptional regulator, LysR family compare
PP_3924 +0.5 1.5 conserved protein of unknown function compare
PP_4804 +0.5 1.8 RlpA-like lipoprotein compare
PP_5423 +0.5 1.7 conserved membrane protein of unknown function compare
PP_4447 +0.5 2.2 conserved protein of unknown function compare
PP_4582 +0.5 2.6 conserved membrane protein of unknown function compare
PP_3729 +0.5 2.1 Periplasmic amino acid-binding protein-related protein compare
PP_2878 +0.5 1.4 conserved protein of unknown function compare
PP_3480 +0.5 1.7 conserved protein of unknown function compare
PP_0540 +0.5 2.6 conserved inner membrane protein compare
PP_3307 +0.5 0.9 conserved protein of unknown function compare
PP_2267 +0.5 2.0 putative Phage single-stranded DNA-binding protein compare
PP_1562 +0.5 0.8 putative Phage terminase, small subunit compare
PP_5201 +0.5 1.4 conserved protein of unknown function, UPF0149 family compare
PP_3639 +0.5 2.6 Alkylhydroperoxidase AhpD domain protein compare
PP_1581 +0.5 3.9 BNR domain protein compare
PP_5337 +0.5 2.7 LysR family transcriptional regulator compare
PP_2668 +0.5 1.5 ABC efflux transporter, ATP-binding protein compare
PP_4207 +0.5 1.3 conserved protein of unknown function compare
PP_0673 +0.5 1.7 conserved protein of unknown function compare
PP_2965 +0.5 2.6 putative tnpA repressor TnpC compare
PP_3064 +0.5 0.9 Phage tail protein compare
PP_2355 +0.5 1.9 Response regulator receiver protein compare
PP_0080 +0.5 1.6 conserved protein of unknown function compare
PP_1322 +0.5 1.1 putative Lipoprotein compare
PP_1573 +0.5 1.8 putative Major tail protein compare
PP_2441 +0.5 1.0 conserved protein of unknown function compare
PP_4354 +0.5 1.2 flagellar export apparatus subunit compare
PP_1028 +0.5 1.4 Transcriptional regulator, LysR family compare
PP_5309 +0.5 0.3 oxidative and nitrosative stress transcriptional dual regulator compare
PP_1214 +0.5 0.8 putative transcriptional regulatory protein compare
PP_2196 +0.5 1.3 agmatinase compare
PP_2989 +0.5 1.5 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_5620 +0.5 2.1 conserved protein of unknown function compare
PP_2722 +0.5 2.1 conserved protein of unknown function compare
PP_1242 +0.5 1.7 conserved protein of unknown function compare
PP_1814 +0.5 1.4 conserved protein of unknown function compare
PP_2457 +0.5 2.9 DNA-binding transcriptional repressor compare
PP_5338 +0.5 0.9 aspartate ammonia-lyase compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source D-Fructose in Pseudomonas putida KT2440

For carbon source D-Fructose across organisms