Experiment set10IT048 for Pseudomonas putida KT2440

Compare to:

D-Mannose carbon source

200 most important genes:

  gene name fitness t score description  
PP_2433 -6.7 -4.6 conserved protein of unknown function compare
PP_5098 -6.6 -6.4 methionine biosynthesis protein MetW compare
PP_3511 -6.3 -8.6 Branched-chain-amino-acid aminotransferase compare
PP_0293 -6.2 -4.3 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0967 -5.9 -11.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4678 -5.9 -15.7 Ketol-acid reductoisomerase compare
PP_5014 -5.8 -4.0 Phosphoribosyl-AMP cyclohydrolase compare
PP_4680 -5.7 -16.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1986 -5.7 -3.9 3-isopropylmalate dehydratase small subunit compare
PP_0422 -5.7 -7.7 Indole-3-glycerol phosphate synthase compare
PP_0795 -5.5 -12.7 fructose PTS permease - IIBC component conserved
PP_1995 -5.4 -9.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5346 -5.4 -11.4 pyruvate carboxylase subunit B compare
PP_5097 -5.3 -15.7 homoserine O-acetyltransferase compare
PP_0290 -5.3 -8.1 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0417 -5.2 -20.6 Anthranilate synthase component 1 compare
PP_0966 -5.2 -13.8 Histidinol dehydrogenase compare
PP_4679 -5.2 -8.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5347 -5.1 -14.4 pyruvate carboxylase subunit A compare
PP_0793 -5.1 -12.8 Phosphotransferase system, fructose-specific EI/HPr/EIIA components conserved
PP_0082 -5.1 -6.1 tryptophan synthase alpha chain compare
PP_5015 -5.0 -6.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1079 -5.0 -8.3 Ornithine carbamoyltransferase compare
PP_4909 -4.9 -8.9 phosphoserine phosphatase compare
PP_0421 -4.9 -8.5 Anthranilate phosphoribosyltransferase compare
PP_2168 -4.9 -14.0 Transaldolase compare
PP_1988 -4.7 -11.8 3-isopropylmalate dehydrogenase compare
PP_0083 -4.7 -7.8 tryptophan synthase beta chain compare
PP_1088 -4.6 -12.6 Argininosuccinate synthase compare
PP_2001 -4.5 -9.8 O-succinylhomoserine sulfhydrylase compare
PP_0292 -4.5 -4.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5185 -4.5 -6.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0965 -4.5 -9.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0794 -4.5 -6.0 1-phosphofructokinase monomer compare
PP_1985 -4.4 -7.4 3-isopropylmalate dehydratase large subunit compare
PP_0184 -4.3 -7.2 Argininosuccinate lyase compare
PP_5128 -4.3 -8.2 Dihydroxy-acid dehydratase compare
PP_0289 -4.3 -6.9 Imidazoleglycerol-phosphate dehydratase compare
PP_0691 -4.2 -5.8 Glutamate 5-kinase compare
PP_2371 -4.2 -8.0 Sulphite reductase hemoprotein, beta subunit compare
PP_4890 -4.1 -6.8 ATP phosphoribosyltransferase regulatory subunit compare
PP_3649 -4.0 -3.9 Transcriptional regulator, GntR family compare
PP_3999 -3.9 -7.9 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4058 -3.8 -14.6 1,4-alpha-glucan branching enzyme compare
PP_1231 -3.8 -6.5 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1215 -3.7 -2.5 Crossover junction endodeoxyribonuclease RuvC compare
PP_1898 -3.6 -4.9 MotA/TolQ/ExbB proton channel family protein compare
PP_0787 -3.4 -3.2 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1022 -3.4 -7.5 glucose 6-phosphate-1-dehydrogenase compare
PP_5289 -3.2 -6.0 Acetylglutamate kinase compare
PP_1654 -3.2 -4.3 cysteine synthase B compare
PP_1362 -3.0 -5.7 pyruvate kinase II compare
PP_4122 -3.0 -2.1 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0339 -3.0 -2.9 Pyruvate dehydrogenase E1 component compare
PP_5348 -3.0 -7.0 Transcriptional regulator, LysR family compare
PP_4724 -3.0 -8.8 Carbamoyl-phosphate synthase small chain compare
PP_4701 -3.0 -1.8 glucose-6-phosphate isomerase compare
PP_4779 -2.9 -17.2 AMP nucleosidase compare
PP_4999 -2.8 -3.1 dihydroorotase-like protein compare
PP_2327 -2.8 -6.3 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4874 -2.6 -1.8 50S ribosomal protein L9 compare
PP_1664 -2.5 -5.2 phosphoribosylglycinamide formyltransferase 1 compare
PP_5054 -2.5 -2.9 glutaredoxin 3 compare
PP_3662 -2.4 -10.0 conserved protein of unknown function compare
PP_4799 -2.4 -3.6 putative Muramoyltetrapeptide carboxypeptidase compare
PP_2370 -2.3 -2.4 conserved protein of unknown function compare
PP_1025 -2.3 -7.2 2-isopropylmalate synthase compare
PP_4723 -2.3 -13.1 Carbamoyl-phosphate synthase large chain compare
PP_4994 -2.2 -5.1 conserved protein of unknown function compare
PP_5198 -2.2 -4.2 conserved protein of unknown function compare
PP_4004 -2.2 -4.1 DNA translocase FtsK compare
PP_4126 -2.2 -1.5 NADH-quinone oxidoreductase subunit I compare
PP_4364 -2.1 -5.0 putative Anti-sigma F factor antagonist compare
PP_4700 -2.0 -3.6 pantothenate synthetase compare
PP_0420 -2.0 -5.6 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4130 -2.0 -5.2 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4696 -2.0 -4.9 Nitrogen regulation protein NR(I) compare
PP_4129 -2.0 -2.6 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1764 -1.9 -8.8 Phosphoglycolate phosphatase 2 compare
PP_4121 -1.9 -3.5 NADH-quinone oxidoreductase subunit C/D compare
PP_4124 -1.9 -4.6 NADH-quinone oxidoreductase subunit G compare
PP_0735 -1.9 -2.6 molybdopterin-synthase adenylyltransferase compare
PP_5155 -1.9 -6.4 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4342 -1.8 -3.4 flagellar synthesis regulator, putative ATPase compare
PP_5332 -1.8 -7.7 conserved protein of unknown function conserved
PP_3443 -1.7 -9.0 putative glyceraldehyde-3-phosphate dehydrogenase conserved
PP_0185 -1.7 -7.8 Positive alginate biosynthesis regulatory protein compare
PP_1426 -1.6 -10.3 L-aspartate oxidase compare
PP_4693 -1.6 -5.4 RNA polymerase-binding transcription factor DksA compare
PP_4895 -1.6 -3.3 tRNA dimethylallyltransferase compare
PP_1428 -1.6 -1.1 Sigma factor AlgU negative regulatory protein compare
PP_4131 -1.6 -4.9 NADH-quinone oxidoreductase subunit N compare
PP_0362 -1.5 -9.2 Biotin synthase compare
PP_4120 -1.5 -3.2 NADH-quinone oxidoreductase subunit B compare
PP_2868 -1.4 -4.9 Transcriptional regulator, Cro/CI family compare
PP_1656 -1.4 -8.1 ATP:GTP 3'-pyrophosphotransferase compare
PP_5095 -1.3 -2.0 pyrroline-5-carboxylate reductase compare
PP_5705 -1.3 -3.0 protein of unknown function compare
PP_2029 -1.3 -3.2 von Willebrand factor type A domain protein compare
PP_1014 -1.3 -6.9 aldose-ketose isomerase conserved
PP_1291 -1.3 -6.8 PhoH family protein compare
PP_1941 -1.2 -6.2 conserved protein of unknown function compare
PP_3790 -1.2 -6.7 diaminopimelate epimerase compare
PP_3105 -1.2 -1.8 conserved membrane protein of unknown function compare
PP_1233 -1.2 -3.9 sulfurtransferase compare
PP_4060 -1.2 -8.1 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_1216 -1.2 -2.0 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1176 -1.2 -3.1 conserved protein of unknown function compare
PP_0291 -1.1 -1.8 conserved protein of unknown function compare
PP_3368 -1.1 -5.8 Major facilitator family transporter compare
PP_1493 -1.1 -2.2 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0035 -1.1 -2.5 putative bactoprenol-linked glycose transferase compare
PP_4099 -1.1 -10.3 two-componenent system BarA/UvrY - regulatory subunit compare
PP_4008 -1.1 -4.9 ATP-dependent serine protease compare
PP_5533 -1.1 -1.5 conserved protein of unknown function compare
PP_3505 -1.1 -2.7 conserved protein of unknown function compare
PP_1650 -1.0 -9.5 Sensor protein GacS compare
PP_4073 -1.0 -2.2 conserved exported protein of unknown function compare
PP_2345 -1.0 -1.7 conserved exported protein of unknown function compare
PP_1676 -1.0 -3.4 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_3539 -1.0 -2.3 putative Transcriptional regulator compare
PP_5SB -1.0 -2.4 5S ribosomal RNA compare
PP_4710 -1.0 -5.5 tRNA pseudouridine 55 synthase compare
PP_2429 -0.9 -1.2 putative Membrane protein compare
PP_1860 -0.9 -4.6 Organic hydroperoxide resistance transcriptional regulator compare
PP_4814 -0.9 -2.4 ATP-dependent protease La domain protein compare
PP_0856 -0.9 -2.1 conserved lipoprotein of unknown function compare
PP_0957 -0.9 -2.1 D-arabinose 5-phosphate isomerase compare
PP_1678 -0.9 -2.8 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_0127 -0.9 -4.6 Thiol:disulfide interchange protein compare
PP_5717 -0.9 -1.6 conserved protein of unknown function compare
PP_1679 -0.9 -2.9 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_1217 -0.9 -2.7 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1611 -0.9 -1.7 2-dehydro-3-deoxyphosphooctonate aldolase compare
PP_5329 -0.9 -2.4 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_1128 -0.9 -2.2 OmpA family protein compare
PP_0063 -0.9 -2.8 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_1800 -0.9 -6.8 Oxidoreductase Rmd compare
PP_2032 -0.9 -3.8 putative ATPase compare
PP_4830 -0.9 -3.9 precorrin-6Y C(5,15)-methyltransferase compare
PP_5227 -0.9 -4.4 diaminopimelate decarboxylase compare
PP_0949 -0.9 -3.4 putative ATP-binding protein UPF0042 compare
PP_0379 -0.8 -3.2 Coenzyme PQQ synthesis protein B compare
PP_4262 -0.8 -2.1 Cytochrome oxidase maturation protein, cbb3-type compare
PP_1672 -0.8 -2.8 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_2348 -0.8 -3.2 Sensor histidine kinase compare
PP_t29 -0.8 -1.4 tRNA-Ala compare
PP_1009 -0.8 -2.8 glyceraldehyde-3-phosphate dehydrogenase compare
PP_0150 -0.8 -3.0 conserved exported protein of unknown function compare
PP_5230 -0.8 -2.5 Tyrosine recombinase XerC compare
PP_4268 -0.8 -1.1 nucleoid-associated broad specificity regulator compare
PP_1808 -0.8 -2.5 glucose-6-phosphate isomerase compare
PP_5328 -0.8 -2.4 putative phosphate transport system permease protein compare
PP_2747 -0.8 -1.6 conserved protein of unknown function compare
PP_5104 -0.8 -4.1 thiazole synthase compare
PP_5028 -0.8 -2.0 proline iminopeptidase compare
PP_5055 -0.8 -2.7 Sulfurtransferase compare
PP_1344 -0.8 -1.6 conserved protein of unknown function compare
PP_4993 -0.8 -2.1 Glutathione synthetase compare
PP_2326 -0.8 -4.3 Universal stress protein compare
PP_0413 -0.8 -6.2 Polyamine ABC transporter, permease protein compare
PP_1387 -0.8 -3.0 Probable HTH-type transcriptional regulator TtgR compare
PP_2324 -0.8 -4.1 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_2622 -0.8 -2.3 conserved protein of unknown function compare
PP_2414 -0.8 -0.8 conserved exported protein of unknown function compare
PP_2987 -0.8 -4.3 conserved protein of unknown function compare
PP_3359 -0.8 -2.0 putative Hydroxycinnamic acid degradation regulator compare
PP_3409 -0.8 -1.5 putative Cobalamin biosynthesis protein cobE compare
PP_4964 -0.7 -1.6 D-erythrose 4-phosphate dehydrogenase compare
PP_5358 -0.7 -3.0 conserved protein of unknown function compare
PP_3731 -0.7 -4.2 Transcriptional regulator, TetR family compare
PP_0414 -0.7 -2.2 Polyamine ABC transporter, permease protein compare
PP_0905 -0.7 -0.7 conserved exported protein of unknown function compare
PP_3484 -0.7 -2.6 Response regulator receiver protein compare
PP_0376 -0.7 -4.5 Coenzyme PQQ synthesis protein E compare
PP_1832 -0.7 -4.0 putative Oxidase compare
PP_3916 -0.7 -2.1 conserved protein of unknown function compare
PP_2328 -0.7 -3.2 Phosphoadenosine phosphosulfate reductase compare
PP_1444 -0.7 -5.2 quinoprotein glucose dehydrogenase compare
PP_0719 -0.7 -0.9 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_3132 -0.7 -4.2 putative Polysaccharide transporter compare
PP_3603 -0.7 -3.3 Transcriptional regulator, GntR family compare
PP_4910 -0.7 -1.3 conserved protein of unknown function compare
PP_5295 -0.7 -0.9 conserved protein of unknown function compare
PP_4214 -0.7 -2.1 pyoverdine biosynthesis related protein compare
PP_5639 -0.7 -4.1 conserved exported protein of unknown function compare
PP_1427 -0.7 -3.2 RNA polymerase sigma E factor compare
PP_1776 -0.7 -4.9 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_5327 -0.7 -3.8 putative phosphate ABC transporter, permease subunit compare
PP_2655 -0.7 -2.0 conserved protein of unknown function compare
PP_t11 -0.7 -1.4 tRNA-Lys compare
PP_5225 -0.7 -1.1 frataxin compare
PP_5508 -0.7 -1.0 conserved protein of unknown function compare
PP_0381 -0.7 -3.8 Coenzyme PQQ synthesis protein F compare
PP_2336 -0.7 -1.9 aconitate hydratase 1 compare
PP_4880 -0.7 -3.4 exoribonuclease R compare
PP_4754 -0.6 -4.2 Transcriptional regulator, TetR family compare
PP_2373 -0.6 -1.5 conserved protein of unknown function compare
PP_4782 -0.6 -2.8 Phosphomethylpyrimidine kinase compare
PP_4988 -0.6 -2.8 signal transduction histidine kinase CheA/CheY-like receiver compare


Specific Phenotypes

For 13 genes in this experiment

For carbon source D-Mannose in Pseudomonas putida KT2440

For carbon source D-Mannose across organisms