Experiment set10IT047 for Pseudomonas putida KT2440

Compare to:

Sodium pyruvate carbon source

200 most important genes:

  gene name fitness t score description  
PP_0293 -4.5 -3.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4999 -4.3 -3.0 dihydroorotase-like protein compare
PP_4696 -4.2 -6.5 Nitrogen regulation protein NR(I) compare
PP_0083 -3.7 -7.9 tryptophan synthase beta chain compare
PP_5095 -3.6 -2.3 pyrroline-5-carboxylate reductase compare
PP_4679 -3.5 -6.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0290 -3.3 -6.8 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4678 -3.1 -10.3 Ketol-acid reductoisomerase compare
PP_1995 -3.0 -8.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0593 -3.0 -1.5 putative ribosome-binding factor compare
PP_0082 -2.8 -5.9 tryptophan synthase alpha chain compare
PP_1985 -2.7 -6.2 3-isopropylmalate dehydratase large subunit compare
PP_3511 -2.6 -6.3 Branched-chain-amino-acid aminotransferase compare
PP_2371 -2.6 -5.1 Sulphite reductase hemoprotein, beta subunit compare
PP_3999 -2.6 -8.6 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4640 -2.5 -5.8 conserved protein of unknown function conserved
PP_5014 -2.5 -2.6 Phosphoribosyl-AMP cyclohydrolase compare
PP_0691 -2.4 -4.1 Glutamate 5-kinase compare
PP_0966 -2.4 -8.1 Histidinol dehydrogenase compare
PP_1988 -2.4 -6.3 3-isopropylmalate dehydrogenase compare
PP_4680 -2.4 -8.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5289 -2.4 -3.9 Acetylglutamate kinase compare
PP_5706 -2.3 -2.7 Sec translocation complex - SecG subunit compare
PP_4641 -2.3 -9.0 putative transporter conserved
PP_4120 -2.3 -3.4 NADH-quinone oxidoreductase subunit B compare
PP_5185 -2.3 -5.3 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5128 -2.2 -5.9 Dihydroxy-acid dehydratase compare
PP_4695 -2.2 -6.5 Sensory box histidine kinase compare
PP_0967 -2.2 -6.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5347 -2.2 -7.7 pyruvate carboxylase subunit A compare
PP_4131 -2.1 -5.3 NADH-quinone oxidoreductase subunit N compare
PP_1826 -2.1 -4.1 Hydrolase, isochorismatase family compare
PP_1088 -2.0 -7.2 Argininosuccinate synthase compare
PP_2168 -2.0 -8.5 Transaldolase compare
PP_5098 -2.0 -6.0 methionine biosynthesis protein MetW compare
PP_5097 -1.9 -9.1 homoserine O-acetyltransferase compare
PP_0339 -1.9 -4.4 Pyruvate dehydrogenase E1 component compare
PP_4700 -1.9 -3.4 pantothenate synthetase compare
PP_4121 -1.8 -3.8 NADH-quinone oxidoreductase subunit C/D compare
PP_4943 -1.8 -1.7 putative Glycosyl transferase compare
PP_0965 -1.8 -8.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4890 -1.8 -3.6 ATP phosphoribosyltransferase regulatory subunit compare
PP_0421 -1.8 -4.5 Anthranilate phosphoribosyltransferase compare
PP_5348 -1.8 -7.9 Transcriptional regulator, LysR family compare
PP_5628 -1.8 -2.8 conserved protein of unknown function compare
PP_0673 -1.8 -3.9 conserved protein of unknown function compare
PP_4724 -1.8 -4.9 Carbamoyl-phosphate synthase small chain compare
PP_4130 -1.7 -4.2 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4129 -1.7 -2.3 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_5346 -1.7 -5.3 pyruvate carboxylase subunit B compare
PP_0417 -1.7 -9.4 Anthranilate synthase component 1 compare
PP_1079 -1.7 -4.3 Ornithine carbamoyltransferase compare
PP_1528 -1.6 -1.3 conserved protein of unknown function compare
PP_0420 -1.6 -7.9 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_3903 -1.6 -2.2 conserved protein of unknown function compare
PP_4909 -1.6 -4.4 phosphoserine phosphatase compare
PP_3434 -1.6 -2.3 conserved protein of unknown function compare
PP_2001 -1.6 -6.0 O-succinylhomoserine sulfhydrylase compare
PP_0422 -1.5 -3.2 Indole-3-glycerol phosphate synthase compare
PP_4268 -1.5 -1.4 nucleoid-associated broad specificity regulator compare
PP_1635 -1.5 -4.4 DNA-binding response regulator compare
PP_1986 -1.5 -2.6 3-isopropylmalate dehydratase small subunit compare
PP_1214 -1.5 -1.6 putative transcriptional regulatory protein compare
PP_3824 -1.5 -3.0 conserved exported protein of unknown function compare
PP_0289 -1.5 -4.2 Imidazoleglycerol-phosphate dehydratase compare
PP_1632 -1.5 -1.4 conserved protein of unknown function compare
PP_1783 -1.4 -0.9 dTDP-glucose pyrophosphorylase compare
PP_5017 -1.4 -1.5 Sec-independent protein translocase protein TatB compare
PP_3539 -1.4 -3.0 putative Transcriptional regulator compare
PP_5114 -1.3 -1.6 putative adenine methyltransferase compare
PP_0719 -1.3 -1.4 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1994 -1.3 -1.2 tRNA pseudouridine (38-40)synthase compare
PP_2899 -1.3 -1.7 conserved exported protein of unknown function compare
PP_0063 -1.3 -3.4 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_5155 -1.3 -4.0 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2378 -1.3 -2.0 Fe/S biogenesis protein NfuA compare
PP_2087 -1.3 -2.5 CmpX protein compare
PP_5015 -1.3 -1.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_2433 -1.3 -1.8 conserved protein of unknown function compare
PP_3989 -1.3 -2.8 DNA-cytosine methyltransferase compare
PP_2186 -1.2 -2.5 putative Formate dehydrogenase, delta subunit compare
PP_0184 -1.2 -2.7 Argininosuccinate lyase compare
PP_5000 -1.2 -1.6 peptidase component of the ATP-dependent HslVU protease compare
PP_1743 -1.2 -6.4 acetate permease conserved
PP_4223 -1.2 -1.7 diaminobutyrate-2-oxoglutarate transaminase compare
PP_4828 -1.2 -1.1 Precorrin-8X methylmutase compare
PP_4723 -1.2 -6.3 Carbamoyl-phosphate synthase large chain compare
PP_4639 -1.2 -5.7 P-loop guanosine triphosphatase-dependent zinc chaperone conserved
PP_0035 -1.2 -2.8 putative bactoprenol-linked glycose transferase compare
PP_2633 -1.1 -1.7 conserved protein of unknown function compare
PP_1938 -1.1 -1.5 conserved protein of unknown function compare
PP_2222 -1.1 -3.1 conserved protein of unknown function compare
PP_5704 -1.1 -3.1 conserved protein of unknown function compare
PP_4355 -1.1 -1.7 flagellar export apparatus subunit compare
PP_0627 -1.1 -2.1 conserved protein of unknown function compare
PP_2898 -1.1 -2.3 conserved exported protein of unknown function compare
PP_4124 -1.1 -3.1 NADH-quinone oxidoreductase subunit G compare
PP_2646 -1.1 -2.5 conserved protein of unknown function compare
PP_1733 -1.1 -2.4 membrane ATPase of the MinC-MinD-MinE system compare
PP_1122 -1.1 -1.7 OmpA family protein compare
PP_4993 -1.1 -2.4 Glutathione synthetase compare
PP_4364 -1.0 -2.8 putative Anti-sigma F factor antagonist compare
PP_5583 -1.0 -1.7 conserved protein of unknown function compare
PP_3365 -1.0 -1.1 Acetolactate synthase compare
PP_3603 -1.0 -3.1 Transcriptional regulator, GntR family compare
PP_2345 -1.0 -2.8 conserved exported protein of unknown function compare
PP_1344 -1.0 -1.1 conserved protein of unknown function compare
PP_1695 -1.0 -4.3 putative Sodium-solute symporter/sensory box histidine kinase/response regulator compare
PP_3541 -1.0 -2.2 Transporter, MgtC family compare
PP_3037 -1.0 -2.3 C4-type zinc finger protein, DksA/TraR family compare
PP_5227 -1.0 -3.6 diaminopimelate decarboxylase compare
PP_0292 -1.0 -1.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_3003 -1.0 -2.7 3-dehydroquinate dehydratase 3, type II compare
PP_4892 -1.0 -3.4 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_2307 -0.9 -1.7 conserved protein of unknown function compare
PP_3481 -0.9 -1.6 conserved exported protein of unknown function compare
PP_4296 -0.9 -1.5 conserved exported protein of unknown function compare
PP_3048 -0.9 -1.5 conserved protein of unknown function compare
PP_t12 -0.9 -0.9 tRNA-Thr compare
PP_1654 -0.9 -2.6 cysteine synthase B compare
PP_2764 -0.9 -2.9 FMN reductase (NADPH) compare
PP_2622 -0.9 -2.4 conserved protein of unknown function compare
PP_5654 -0.9 -1.8 putative phosphotriesterase compare
PP_5279 -0.9 -1.9 conserved protein of unknown function compare
PP_2878 -0.9 -1.4 conserved protein of unknown function compare
PP_2370 -0.9 -1.7 conserved protein of unknown function compare
PP_2306 -0.9 -1.3 conserved exported protein of unknown function compare
PP_4875 -0.9 -2.2 conserved membrane protein of unknown function compare
PP_0425 -0.9 -1.7 conserved protein of unknown function compare
PP_5027 -0.9 -1.6 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_0414 -0.8 -3.2 Polyamine ABC transporter, permease protein compare
PP_1706 -0.8 -3.6 Nitrite reductase compare
PP_5652 -0.8 -1.2 conserved protein of unknown function, phage origin compare
PP_4693 -0.8 -2.5 RNA polymerase-binding transcription factor DksA compare
PP_5639 -0.8 -3.8 conserved exported protein of unknown function compare
PP_1231 -0.8 -2.8 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_3647 -0.8 -2.1 putative Oxidoreductase compare
PP_2653 -0.8 -2.0 Transcriptional regulator, Cro/CI family compare
PP_3328 -0.8 -1.3 putative Ring-cleaving dioxygenase compare
PP_0685 -0.8 -1.1 conserved protein of unknown function compare
PP_3105 -0.8 -1.3 conserved membrane protein of unknown function compare
PP_1860 -0.8 -3.0 Organic hydroperoxide resistance transcriptional regulator compare
PP_2137 -0.8 -1.6 beta-ketoadipyl CoA thiolase, beta component compare
PP_4122 -0.8 -0.6 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_3946 -0.8 -0.7 HTH-type transcriptional repressor NicR compare
PP_2032 -0.8 -2.9 putative ATPase compare
PP_0368 -0.8 -3.8 putative Acyl-CoA dehydrogenase compare
PP_0683 -0.8 -2.2 conserved protein of unknown function compare
PP_3411 -0.8 -1.1 conserved protein of unknown function compare
PP_2272 -0.7 -3.2 conserved protein of unknown function compare
PP_3227 -0.7 -2.2 Transcriptional regulator, LysR family compare
PP_4902 -0.7 -1.3 Oligoribonuclease compare
PP_4262 -0.7 -2.0 Cytochrome oxidase maturation protein, cbb3-type compare
PP_3156 -0.7 -2.5 Universal stress protein family compare
PP_4966 -0.7 -1.9 transcriptional regulator of methionine metabolism compare
PP_2442 -0.7 -1.3 conserved protein of unknown function, DUF480 family compare
PP_1233 -0.7 -2.9 sulfurtransferase compare
PP_1237 -0.7 -1.1 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_2800 -0.7 -2.5 putative Diaminobutyrate-2-oxoglutarate transaminase compare
PP_2923 -0.7 -1.4 conserved protein of unknown function compare
PP_2290 -0.7 -3.0 conserved protein of unknown function compare
PP_1691 -0.7 -1.8 conserved protein of unknown function compare
PP_4074 -0.7 -1.9 conserved protein of unknown function compare
PP_2060 -0.7 -1.5 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_2044 -0.7 -1.5 conserved inner membrane protein of unknown function compare
PP_1766 -0.7 -1.7 methylthioribose-1-phosphate isomerase compare
PP_5248 -0.7 -1.0 putative hydrolase compare
PP_0862 -0.7 -3.2 PKHD-type hydroxylase PP_0862 compare
PP_2655 -0.7 -1.6 conserved protein of unknown function compare
PP_2970 -0.7 -1.4 conserved exported protein of unknown function compare
PP_4707 -0.7 -0.8 OsmY-related protein compare
PP_0361 -0.7 -1.6 putative Competence protein ComF compare
PP_2253 -0.7 -1.2 Transcriptional regulator, GntR family compare
PP_0775 -0.7 -1.7 conserved protein of unknown function compare
PP_2550 -0.7 -1.8 putative transcriptional regulatory protein compare
PP_4109 -0.7 -1.1 conserved protein of unknown function compare
PP_3926 -0.7 -1.0 short-chain dehydrogenase compare
PP_5091 -0.7 -2.1 conserved membrane protein of unknown function compare
PP_2404 -0.7 -2.6 conserved exported protein of unknown function compare
PP_0319 -0.7 -1.3 conserved protein of unknown function compare
PP_2327 -0.6 -1.9 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_2402 -0.6 -0.8 putative Sensor histidine kinase compare
PP_0848 -0.6 -1.0 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_3110 -0.6 -1.7 protein of unknown function compare
PP_5176 -0.6 -1.5 conserved protein of unknown function compare
PP_0624 -0.6 -2.3 Uncharacterized protein YfiH compare
PP_3509 -0.6 -1.2 Glyoxalase family protein compare
PP_1683 -0.6 -0.9 Transcriptional regulator, MarR family compare
PP_2291 -0.6 -1.6 conserved protein of unknown function compare
PP_5204 -0.6 -1.8 conserved protein of unknown function compare
PP_4482 -0.6 -1.3 Transcriptional regulator, AraC family compare
PP_4850 -0.6 -1.9 conserved membrane protein of unknown function compare
PP_2499 -0.6 -0.8 conserved protein of unknown function compare
PP_3471 -0.6 -2.2 conserved protein of unknown function compare
PP_0772 -0.6 -1.9 Metallo-beta-lactamase family protein compare
PP_2118 -0.6 -1.4 conserved protein of unknown function compare
PP_4837 -0.6 -2.2 conserved protein of unknown function compare
PP_1119 -0.6 -2.4 conserved protein of unknown function compare
PP_1147 -0.6 -2.7 conserved protein of unknown function compare
PP_2750 -0.6 -0.8 putative Branched-chain amino acid ABC transporter, permease protein compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source Sodium pyruvate in Pseudomonas putida KT2440

For carbon source Sodium pyruvate across organisms