Experiment set10IT045 for Pseudomonas putida KT2440

Compare to:

D,L-Malic Acid carbon source

200 most important genes:

  gene name fitness t score description  
PP_4364 -4.1 -6.0 putative Anti-sigma F factor antagonist compare
PP_1079 -4.0 -7.1 Ornithine carbamoyltransferase compare
PP_0290 -3.8 -7.7 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4679 -3.4 -6.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0965 -3.2 -8.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0833 -3.1 -2.1 queuine tRNA-ribosyltransferase compare
PP_5076 -3.1 -12.9 L-glutamate synthase(NADPH) alpha subunit compare
PP_2370 -3.0 -3.5 conserved protein of unknown function compare
PP_0289 -3.0 -6.5 Imidazoleglycerol-phosphate dehydratase compare
PP_0293 -3.0 -2.7 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5075 -3.0 -12.5 glutamate synthase (NADPH) beta subunit compare
PP_0082 -2.8 -5.6 tryptophan synthase alpha chain compare
PP_4680 -2.8 -11.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_3999 -2.8 -8.7 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2371 -2.8 -8.3 Sulphite reductase hemoprotein, beta subunit compare
PP_0691 -2.7 -5.0 Glutamate 5-kinase compare
PP_3511 -2.6 -7.8 Branched-chain-amino-acid aminotransferase compare
PP_0291 -2.6 -3.3 conserved protein of unknown function compare
PP_5128 -2.5 -7.1 Dihydroxy-acid dehydratase compare
PP_1986 -2.4 -3.1 3-isopropylmalate dehydratase small subunit compare
PP_0339 -2.4 -4.0 Pyruvate dehydrogenase E1 component compare
PP_4678 -2.4 -10.5 Ketol-acid reductoisomerase compare
PP_0292 -2.4 -3.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0420 -2.3 -10.4 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0417 -2.3 -12.5 Anthranilate synthase component 1 compare
PP_0421 -2.2 -7.9 Anthranilate phosphoribosyltransferase compare
PP_4890 -2.2 -5.1 ATP phosphoribosyltransferase regulatory subunit compare
PP_1995 -2.2 -6.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4723 -2.2 -10.4 Carbamoyl-phosphate synthase large chain compare
PP_0422 -2.1 -4.1 Indole-3-glycerol phosphate synthase compare
PP_1025 -2.1 -9.3 2-isopropylmalate synthase compare
PP_2029 -2.1 -3.0 von Willebrand factor type A domain protein compare
PP_0966 -2.0 -8.4 Histidinol dehydrogenase compare
PP_0967 -1.9 -6.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4909 -1.9 -5.3 phosphoserine phosphatase compare
PP_0083 -1.8 -4.1 tryptophan synthase beta chain compare
PP_4700 -1.8 -3.2 pantothenate synthetase compare
PP_4724 -1.8 -5.5 Carbamoyl-phosphate synthase small chain compare
PP_0048 -1.7 -1.7 conserved protein of unknown function compare
PP_2378 -1.7 -2.7 Fe/S biogenesis protein NfuA compare
PP_5015 -1.6 -3.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4999 -1.6 -2.3 dihydroorotase-like protein compare
PP_5185 -1.5 -3.6 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5014 -1.5 -3.0 Phosphoribosyl-AMP cyclohydrolase compare
PP_0276 -1.5 -1.4 Transcriptional regulator, Cro/CI family compare
PP_1988 -1.4 -5.1 3-isopropylmalate dehydrogenase compare
PP_1088 -1.4 -6.6 Argininosuccinate synthase compare
PP_1678 -1.4 -2.7 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_5267 -1.4 -1.4 putative cytochrome c5 compare
PP_2681 -1.4 -1.8 coenzyme PQQ synthesis protein D compare
PP_0393 -1.3 -2.1 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5453 -1.3 -2.5 conserved protein of unknown function compare
PP_1214 -1.3 -1.7 putative transcriptional regulatory protein compare
PP_2328 -1.3 -4.5 Phosphoadenosine phosphosulfate reductase compare
PP_4122 -1.3 -1.5 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_5289 -1.3 -3.8 Acetylglutamate kinase compare
PP_5095 -1.2 -1.5 pyrroline-5-carboxylate reductase compare
PP_2001 -1.2 -5.2 O-succinylhomoserine sulfhydrylase compare
PP_5331 -1.2 -4.2 Long-chain acyl-CoA thioester hydrolase compare
PP_1985 -1.2 -2.1 3-isopropylmalate dehydratase large subunit compare
PP_3312 -1.2 -2.1 putative Heat shock protein compare
PP_0787 -1.2 -2.1 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1231 -1.2 -2.7 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5098 -1.2 -5.4 methionine biosynthesis protein MetW compare
PP_5097 -1.1 -6.4 homoserine O-acetyltransferase compare
PP_4129 -1.1 -2.2 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_5303 -1.1 -3.2 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1664 -1.1 -2.9 phosphoribosylglycinamide formyltransferase 1 compare
PP_5007 -1.1 -1.8 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_3821 -1.1 -4.6 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0184 -1.1 -2.6 Argininosuccinate lyase compare
PP_4262 -1.0 -1.8 Cytochrome oxidase maturation protein, cbb3-type compare
PP_1770 -1.0 -1.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_0001 -1.0 -1.1 probable chromosome-partitioning protein compare
PP_5155 -1.0 -2.7 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5227 -1.0 -4.5 diaminopimelate decarboxylase compare
PP_2032 -1.0 -3.4 putative ATPase compare
PP_4130 -1.0 -2.5 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4952 -1.0 -1.4 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_1679 -1.0 -2.3 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_2429 -1.0 -2.1 putative Membrane protein compare
PP_1783 -0.9 -1.0 dTDP-glucose pyrophosphorylase compare
PP_5652 -0.9 -2.4 conserved protein of unknown function, phage origin compare
PP_0035 -0.9 -1.7 putative bactoprenol-linked glycose transferase compare
PP_4480 -0.9 -4.8 arginine N-succinyltransferase, subunit alpha compare
PP_5552 -0.9 -1.9 conserved protein of unknown function compare
PP_3094 -0.9 -3.1 conserved exported protein of unknown function compare
PP_4481 -0.9 -3.7 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_1489 -0.9 -1.9 CheW domain protein compare
PP_3903 -0.9 -1.9 conserved protein of unknown function compare
PP_4824 -0.9 -3.6 Sensor histidine kinase/response regulator compare
PP_0307 -0.9 -1.6 conserved exported protein of unknown function compare
PP_3408 -0.9 -2.4 cobalt transporter subunit A compare
PP_2794 -0.9 -1.9 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_2747 -0.9 -1.6 conserved protein of unknown function compare
PP_3590 -0.8 -3.7 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_4471 -0.8 -2.6 Magnesium transporter compare
PP_3505 -0.8 -1.1 conserved protein of unknown function compare
PP_3064 -0.8 -1.4 Phage tail protein compare
PP_1344 -0.8 -1.1 conserved protein of unknown function compare
PP_4701 -0.8 -0.8 glucose-6-phosphate isomerase compare
PP_0674 -0.8 -5.1 ADP/ATP ratio sensor and inhibitor of translation compare
PP_1826 -0.8 -1.8 Hydrolase, isochorismatase family compare
PP_1629 -0.8 -2.8 Protein RecA compare
PP_2416 -0.8 -2.1 putative Iron ABC transporter, ATP-binding protein compare
PP_5473 -0.8 -1.5 putative transcriptional regulator, LuxR family compare
PP_5039 -0.8 -1.2 conserved protein of unknown function compare
PP_4642 -0.8 -0.9 Cyclic diguanosine monophosphate-binding protein compare
PP_0855 -0.8 -0.9 conserved protein of unknown function compare
PP_2388 -0.8 -1.9 Transporter, LysE family compare
PP_4793 -0.8 -1.6 conserved protein of unknown function compare
PP_5705 -0.7 -1.8 protein of unknown function compare
PP_2390 -0.7 -2.7 Transcriptional regulator, LysR family compare
PP_0794 -0.7 -1.9 1-phosphofructokinase monomer compare
PP_1628 -0.7 -2.7 NMN amidohydrolase compare
PP_3580 -0.7 -1.9 conserved protein of unknown function compare
PP_1729 -0.7 -1.5 conserved protein of unknown function compare
PP_4131 -0.7 -2.7 NADH-quinone oxidoreductase subunit N compare
PP_3052 -0.7 -1.0 conserved protein of unknown function compare
PP_0263 -0.7 -3.7 C4-dicarboxylate transport transcriptional regulatory protein compare
PP_1912 -0.7 -2.3 Phosphate acyltransferase compare
PP_5598 -0.7 -1.5 conserved protein of unknown function compare
PP_1114 -0.7 -2.6 SEC-C domain protein compare
PP_3649 -0.7 -1.4 Transcriptional regulator, GntR family compare
PP_1186 -0.7 -0.9 two component system DNA-binding transcriptional dual regulator compare
PP_5639 -0.7 -3.8 conserved exported protein of unknown function compare
PP_5028 -0.7 -1.7 proline iminopeptidase compare
PP_5048 -0.7 -2.6 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_3603 -0.7 -3.0 Transcriptional regulator, GntR family compare
PP_1906 -0.7 -2.0 ribosomal large subunit pseudouridine synthase C compare
PP_1675 -0.7 -3.8 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_1099 -0.7 -1.5 Cold shock protein CapB compare
PP_1233 -0.6 -2.0 sulfurtransferase compare
PP_3938 -0.6 -1.3 conserved protein of unknown function compare
PP_3035 -0.6 -1.4 conserved protein of unknown function compare
PP_5008 -0.6 -0.8 Poly granule-associated protein compare
PP_0888 -0.6 -1.1 Photosynthetic apparatus regulatory protein RegA compare
PP_3380 -0.6 -1.5 2-ketogluconate utilization repressor compare
PP_3506 -0.6 -1.4 Magnesium chelatase, subunit ChII compare
PP_4285 -0.6 -2.2 5-hydroxyisourate hydrolase compare
PP_5583 -0.6 -1.1 conserved protein of unknown function compare
PP_0839 -0.6 -1.9 tRNA Cm32/Um32 methyltransferase compare
PP_4479 -0.6 -2.6 arginine N-succinyltransferase, subunit beta compare
PP_1999 -0.6 -1.5 membrane protein required for colicin V production compare
PP_0572 -0.6 -4.0 peptidoglycan glycosyltransferase compare
PP_3508 -0.6 -2.2 Protein CobW compare
PP_1176 -0.6 -1.8 conserved protein of unknown function compare
PP_5586 -0.6 -1.8 exported protein of unknown function compare
PP_2806 -0.6 -1.6 Transcriptional regulator, TetR family compare
PP_0735 -0.6 -0.7 molybdopterin-synthase adenylyltransferase compare
PP_1188 -0.6 -2.7 C4-dicarboxylate transport protein compare
PP_5093 -0.6 -0.9 twitching motility protein compare
PP_3814 -0.6 -1.9 Polyamine ABC transporter, periplasmic polyamine-binding protein compare
PP_1038 -0.6 -1.5 conserved protein of unknown function compare
PP_1021 -0.6 -2.3 DNA-binding transcriptional regulator compare
PP_4362 -0.6 -1.8 conserved protein of unknown function compare
PP_4696 -0.6 -1.9 Nitrogen regulation protein NR(I) compare
PP_0905 -0.6 -0.8 conserved exported protein of unknown function compare
PP_4957 -0.6 -1.9 conserved protein of unknown function compare
PP_3051 -0.6 -1.1 Pyocin R2_PP, tail spike protein compare
PP_5422 -0.6 -2.4 hypothetical protein compare
PP_5603 -0.6 -1.9 putative FAD dependent oxidoreductase compare
PP_3926 -0.6 -1.1 short-chain dehydrogenase compare
PP_4102 -0.6 -1.9 conserved protein of unknown function compare
PP_5232 -0.6 -1.1 conserved protein of unknown function compare
PP_1658 -0.6 -1.8 conserved protein of unknown function compare
PP_3102 -0.6 -2.2 conserved protein of unknown function compare
PP_4124 -0.6 -1.8 NADH-quinone oxidoreductase subunit G compare
PP_4937 -0.6 -1.1 toluene tolerance protein compare
PP_4249 -0.6 -1.8 conserved protein of unknown function compare
PP_0086 -0.5 -1.6 conserved protein of unknown function compare
PP_0274 -0.5 -1.0 putative transcriptional regulator containing HTH domain compare
PP_2547 -0.5 -1.6 Transcriptional regulator, LysR family compare
PP_4067 -0.5 -3.0 methylcrotonyl-CoA carboxylase biotin-containing subunit alpha compare
PP_5678 -0.5 -2.5 protein of unknown function compare
PP_0949 -0.5 -2.8 putative ATP-binding protein UPF0042 compare
PP_3286 -0.5 -2.2 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_2070 -0.5 -1.3 Transcriptional regulator, AraC family compare
PP_1673 -0.5 -1.7 cobyrinate a,c-diamide synthase compare
PP_4829 -0.5 -1.1 putative precorrin-3B synthase compare
PP_1917 -0.5 -2.5 4-amino-4-deoxychorismate lyase compare
PP_4848 -0.5 -1.4 Curved DNA-binding protein compare
PP_0585 -0.5 -1.6 putative metal-sensitive transcriptional regulator, MerR family compare
PP_2142 -0.5 -1.5 Cell division inhibitor SulA compare
PP_1827 -0.5 -2.6 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
PP_4847 -0.5 -1.3 chaperone modulatory of CbpA co-chaperone protein compare
PP_3875 -0.5 -1.3 conserved protein of unknown function compare
PP_0663 -0.5 -2.1 Transcriptional regulator, AsnC family compare
PP_5168 -0.5 -1.4 sulfate/thiosulfate import ATP-binding protein compare
PP_4133 -0.5 -1.0 Transcriptional regulator-related protein compare
PP_0120 -0.5 -2.1 putative zinc ABC transporter compare
PP_5580 -0.5 -0.9 protein of unknown function compare
PP_2327 -0.5 -2.1 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1662 -0.5 -1.3 conserved protein of unknown function compare
PP_4207 -0.5 -1.8 conserved protein of unknown function compare
PP_2520 -0.5 -1.5 conserved protein of unknown function compare
PP_3326 -0.5 -2.7 conserved exported protein of unknown function compare
PP_2274 -0.5 -1.1 conserved protein of unknown function compare
PP_4345 -0.5 -1.9 Transcriptional regulator, GntR family compare
PP_4363 -0.5 -2.9 Sensor histidine kinase/response regulator compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in carbon source experiments

For carbon source D,L-Malic Acid across organisms