Experiment set10IT044 for Pseudomonas simiae WCS417

Compare to:

rhizosphere sample 2; outgrowth in LB

200 most important genes:

  gene name fitness t score description  
PS417_03970 -4.9 -1.6 1-phosphofructokinase compare
PS417_13795 -4.6 -7.8 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_02705 -4.6 -2.5 urease accessory protein UreF compare
PS417_13820 -4.4 -6.0 UDP-glucose 6-dehydrogenase compare
PS417_14065 -4.4 -3.0 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_13510 -4.1 -1.3 polyketide cyclase compare
PS417_24835 -4.0 -4.1 hypothetical protein compare
PS417_09200 -4.0 -3.6 ABC transporter compare
PS417_03310 -3.9 -5.4 carbonate dehydratase compare
PS417_21430 -3.9 -2.7 3-oxoacyl-ACP synthase compare
PS417_02280 -3.8 -2.0 GlcNAc-PI de-N-acetylase compare
PS417_20635 -3.7 -1.2 ABC transporter ATP-binding protein compare
PS417_00185 -3.7 -2.6 tryptophan synthase subunit beta compare
PS417_04270 -3.6 -7.0 ribonuclease G compare
PS417_08230 -3.5 -1.9 lipopolysaccharide biosynthesis protein RfbH compare
PS417_19955 -3.5 -1.5 hypothetical protein compare
PS417_14140 -3.5 -2.2 membrane protein compare
PS417_19835 -3.4 -1.5 flagellar biosynthesis protein FliS compare
PS417_23545 -3.4 -2.0 gamma-glutamyl kinase compare
PS417_13800 -3.3 -2.8 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_22375 -3.3 -1.0 cold-shock protein compare
PS417_18600 -3.3 -2.4 isopropylmalate isomerase compare
PS417_27040 -3.3 -2.5 3-phosphoglycerate dehydrogenase compare
PS417_02510 -3.3 -4.5 ATP phosphoribosyltransferase regulatory subunit compare
PS417_05010 -3.2 -1.6 IclR family transcriptional regulator compare
PS417_11615 -3.2 -1.4 urea ABC transporter ATP-binding protein compare
PS417_06685 -3.2 -1.0 beta-ketoadipyl CoA thiolase compare
PS417_22775 -3.2 -7.4 histidine kinase compare
PS417_13805 -3.2 -8.0 4-amino-4-deoxy-L-arabinose transferase compare
PS417_23375 -3.1 -1.3 cytochrome C oxidase compare
PS417_08220 -3.1 -1.0 epimerase compare
PS417_15100 -3.1 -2.1 BatB protein compare
PS417_18455 -3.1 -2.2 hypothetical protein compare
PS417_01145 -3.1 -1.0 taurine transporter ATP-binding subunit compare
PS417_26685 -3.1 -2.3 hypothetical protein compare
PS417_06500 -3.1 -1.4 hypothetical protein compare
PS417_08135 -3.0 -3.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_18585 -3.0 -4.6 3-isopropylmalate dehydrogenase compare
PS417_26260 -3.0 -1.3 hypothetical protein compare
PS417_01620 -3.0 -2.2 preprotein translocase subunit SecB compare
PS417_16005 -2.9 -2.0 ATPase compare
PS417_23105 -2.9 -1.2 hypothetical protein compare
PS417_01575 -2.9 -1.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_04340 -2.9 -4.8 ribosome hibernation promoting factor HPF compare
PS417_27245 -2.8 -1.9 aminotransferase DegT compare
PS417_04385 -2.8 -3.3 organic solvent ABC transporter substrate-binding protein compare
PS417_19705 -2.8 -2.1 flagellar biosynthesis regulator FlhF compare
PS417_07710 -2.8 -5.0 membrane protein compare
PS417_04875 -2.7 -1.2 molybdenum cofactor biosynthesis protein MoaE compare
PS417_03560 -2.7 -1.7 GTP-binding protein compare
PS417_15540 -2.7 -1.2 NUDIX hydrolase compare
PS417_06530 -2.7 -2.2 membrane protein compare
PS417_06375 -2.7 -0.8 deoxycytidine triphosphate deaminase compare
PS417_08155 -2.6 -1.4 integration host factor subunit beta compare
PS417_08205 -2.6 -3.1 acetyltransferase compare
PS417_27135 -2.6 -0.8 glutamine synthetase compare
PS417_04420 -2.6 -5.3 histidinol dehydrogenase compare
PS417_23810 -2.5 -7.2 acetolactate synthase 3 catalytic subunit compare
PS417_13790 -2.5 -4.3 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_28230 -2.5 -2.5 transcriptional regulator compare
PS417_15935 -2.5 -1.3 Rrf2 family transcriptional regulator compare
PS417_16180 -2.5 -2.6 MFS transporter compare
PS417_00825 -2.5 -2.4 recombinase RecF compare
PS417_26745 -2.5 -4.6 methionine biosynthesis protein MetW compare
PS417_01920 -2.4 -1.0 ATP-dependent protease subunit HslV compare
PS417_26990 -2.4 -1.1 RNA pyrophosphohydrolase compare
PS417_21000 -2.4 -1.5 CrfX protein compare
PS417_04415 -2.4 -3.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_02000 -2.4 -7.4 glutamate synthase compare
PS417_19600 -2.4 -1.1 exonuclease compare
PS417_23800 -2.4 -5.0 ketol-acid reductoisomerase compare
PS417_17215 -2.4 -2.8 peptidylprolyl isomerase compare
PS417_22680 -2.4 -3.2 chemotaxis protein CheY compare
PS417_07470 -2.3 -1.2 hypothetical protein compare
PS417_01580 -2.3 -1.0 imidazole glycerol phosphate synthase compare
PS417_06540 -2.3 -1.1 membrane protein compare
PS417_25650 -2.3 -3.3 anhydro-N-acetylmuramic acid kinase compare
PS417_02415 -2.3 -3.6 phosphoserine phosphatase compare
PS417_26740 -2.3 -5.7 homoserine acetyltransferase compare
PS417_08125 -2.3 -0.7 prephenate dehydratase compare
PS417_11865 -2.3 -1.8 xylose isomerase compare
PS417_12110 -2.3 -1.4 ATP-binding protein compare
PS417_04390 -2.3 -3.1 toluene tolerance protein compare
PS417_24745 -2.3 -2.1 gamma-glutamyl phosphate reductase compare
PS417_23805 -2.3 -2.5 acetolactate synthase 3 regulatory subunit compare
PS417_03935 -2.3 -2.4 N-acetyl-anhydromuranmyl-L-alanine amidase compare
PS417_06245 -2.2 -1.5 zinc metallopeptidase RseP compare
PS417_10985 -2.2 -1.0 NADH:flavin oxidoreductase compare
PS417_15200 -2.2 -2.1 protein activator of alkane oxidation PraB compare
PS417_20130 -2.2 -6.7 dehydrogenase compare
PS417_22520 -2.2 -1.3 histidine kinase compare
PS417_18425 -2.2 -1.2 sporulation protein compare
PS417_22850 -2.2 -4.2 virulence factor family protein compare
PS417_01995 -2.2 -2.1 hypothetical protein compare
PS417_19335 -2.2 -2.1 isochorismatase compare
PS417_11830 -2.1 -2.0 membrane protein compare
PS417_03380 -2.1 -1.0 hypothetical protein compare
PS417_24525 -2.1 -1.9 nuclease compare
PS417_07565 -2.1 -2.0 hypothetical protein compare
PS417_04960 -2.1 -1.3 hypothetical protein compare
PS417_28010 -2.1 -3.0 pyridine nucleotide-disulfide oxidoreductase compare
PS417_12855 -2.1 -2.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_26145 -2.1 -2.4 hypothetical protein compare
PS417_12740 -2.1 -2.8 secretion protein HlyD compare
PS417_01710 -2.1 -3.2 histidine utilization repressor compare
PS417_05100 -2.1 -1.4 RNA polymerase sigma factor compare
PS417_27640 -2.1 -1.1 TetR family transcriptional regulator compare
PS417_02005 -2.0 -6.2 glutamate synthase compare
PS417_21360 -2.0 -0.9 termination factor Rho compare
PS417_26250 -2.0 -3.9 peptidase M19 compare
PS417_08185 -2.0 -2.8 glycosyl transferase compare
PS417_19790 -2.0 -1.9 ATP synthase compare
PS417_22690 -2.0 -3.1 phosphogluconate dehydratase compare
PS417_08170 -2.0 -7.1 capsular biosynthesis protein compare
PS417_06680 -2.0 -4.9 nuclease PIN compare
PS417_09915 -2.0 -1.2 hypothetical protein compare
PS417_04865 -2.0 -2.4 molybdenum cofactor biosynthesis protein MoaC compare
PS417_22450 -2.0 -1.0 ATP-dependent DNA helicase RuvA compare
PS417_12870 -1.9 -1.5 enoyl-CoA hydratase compare
PS417_00175 -1.9 -0.9 CigR compare
PS417_22195 -1.9 -2.9 peptidase compare
PS417_16475 -1.9 -2.7 camphor resistance protein CrcB compare
PS417_16515 -1.9 -1.6 Clp protease ClpS compare
PS417_15285 -1.9 -0.8 type VI secretion protein compare
PS417_17305 -1.9 -1.0 hypothetical protein compare
PS417_21510 -1.9 -1.5 histidine kinase compare
PS417_24655 -1.9 -2.3 hypothetical protein compare
PS417_07170 -1.9 -2.9 hypothetical protein compare
PS417_24615 -1.9 -0.8 hypothetical protein compare
PS417_10040 -1.9 -0.8 MFS transporter compare
PS417_06845 -1.9 -1.1 lipoprotein compare
PS417_22145 -1.9 -6.3 glucose/xylose ABC transporter, periplasmic substrate-binding component (from data) compare
PS417_24710 -1.9 -4.8 lipoprotein compare
PS417_01850 -1.9 -3.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_22565 -1.9 -0.6 formyltetrahydrofolate deformylase compare
PS417_22130 -1.8 -2.6 glucose/xylose ABC transporter, ATPase component (from data) compare
PS417_18390 -1.8 -5.5 LacI family transcriptional regulator compare
PS417_08200 -1.8 -1.8 hypothetical protein compare
PS417_02975 -1.8 -3.2 3-dehydroquinate dehydratase compare
PS417_15030 -1.8 -1.0 short-chain dehydrogenase compare
PS417_04275 -1.8 -8.3 hypothetical protein compare
PS417_00045 -1.8 -1.5 glycerol acyltransferase compare
PS417_17440 -1.8 -1.4 beta-lactamase compare
PS417_21705 -1.8 -2.3 arginine N-succinyltransferase compare
PS417_06735 -1.8 -1.7 3-oxoadipate enol-lactonase compare
PS417_15090 -1.8 -2.4 hypothetical protein compare
PS417_12120 -1.8 -2.6 IclR family transcriptional regulator compare
PS417_27865 -1.8 -1.8 LysR family transcriptional regulator compare
PS417_23855 -1.8 -1.4 ABC transporter substrate-binding protein compare
PS417_16990 -1.7 -3.7 acyl-CoA dehydrogenase compare
PS417_19275 -1.7 -1.0 hypothetical protein compare
PS417_23150 -1.7 -1.8 Cro/Cl family transcriptional regulator compare
PS417_00180 -1.7 -1.5 tryptophan synthase subunit alpha compare
PS417_20115 -1.7 -2.1 hypothetical protein compare
PS417_00315 -1.7 -2.5 MFS transporter compare
PS417_02255 -1.7 -1.0 lipopolysaccharide kinase compare
PS417_00385 -1.7 -0.7 Fur family transcriptional regulator compare
PS417_04365 -1.7 -0.7 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_26235 -1.7 -3.0 (Fe-S)-binding protein compare
PS417_12805 -1.6 -5.8 glycogen branching protein compare
PS417_00705 -1.6 -1.0 MarR family transcriptional regulator compare
PS417_07620 -1.6 -1.4 beta-hexosaminidase compare
PS417_28145 -1.6 -1.8 AraC family transcriptional regulator compare
PS417_00335 -1.6 -4.9 cytochrome B561 compare
PS417_19430 -1.6 -1.2 ureidoglycolate hydrolase compare
PS417_16665 -1.6 -1.2 hypothetical protein compare
PS417_17835 -1.6 -2.2 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
PS417_04290 -1.6 -2.2 hypothetical protein compare
PS417_11540 -1.6 -2.1 NAD synthetase compare
PS417_22135 -1.6 -5.9 glucose/xylose ABC transporter, permease component 1 (from data) compare
PS417_04080 -1.6 -1.9 peptide ABC transporter substrate-binding protein compare
PS417_25710 -1.5 -1.0 indole-3-glycerol-phosphate synthase compare
PS417_04500 -1.5 -1.0 hypothetical protein compare
PS417_22815 -1.5 -3.0 permease compare
PS417_03080 -1.5 -1.6 hypothetical protein compare
PS417_26370 -1.5 -1.8 RNA helicase compare
PS417_26730 -1.5 -0.7 pyrroline-5-carboxylate reductase compare
PS417_13075 -1.5 -1.2 hypothetical protein compare
PS417_23025 -1.5 -4.3 murein transglycosylase compare
PS417_27535 -1.5 -5.7 chemotaxis protein CheY compare
PS417_08225 -1.5 -2.0 acetolactate synthase compare
PS417_22210 -1.5 -1.3 AraC family transcriptional regulator compare
PS417_18235 -1.5 -1.4 nitrile hydratase compare
PS417_18635 -1.5 -1.5 4-hydroxybenzoyl-CoA thioesterase compare
PS417_18540 -1.5 -2.2 colicin V production CvpA compare
PS417_14315 -1.5 -1.4 2,5-dioxovalerate dehydrogenase compare
PS417_19725 -1.5 -3.2 flagellar biosynthesis protein FlhB compare
PS417_18560 -1.5 -4.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_10405 -1.5 -0.8 filamentous hemagglutinin compare
PS417_03300 -1.5 -1.8 alanine acetyltransferase compare
PS417_23670 -1.5 -2.2 Muconate cycloisomerase (EC 5.5.1.1) (from data) compare
PS417_25155 -1.4 -1.1 hypothetical protein compare
PS417_23250 -1.4 -3.6 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_07305 -1.4 -1.2 3-beta hydroxysteroid dehydrogenase compare
PS417_13255 -1.4 -1.3 ABC transporter compare
PS417_23915 -1.4 -1.8 pantoate--beta-alanine ligase compare
PS417_24800 -1.4 -2.2 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_05820 -1.4 -1.4 recombinase RecX compare
PS417_22410 -1.4 -2.0 hypothetical protein compare
PS417_21830 -1.4 -2.1 TetR family transcriptional regulator compare


Specific Phenotypes

For 10 genes in this experiment