Experiment set10IT044 for Pseudomonas putida KT2440

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a-Ketoglutaric acid disodium salt hydrate carbon source

200 most important genes:

  gene name fitness t score description  
PP_0691 -4.6 -5.5 Glutamate 5-kinase compare
PP_0083 -3.9 -8.7 tryptophan synthase beta chain compare
PP_2328 -3.7 -8.3 Phosphoadenosine phosphosulfate reductase compare
PP_4696 -3.6 -7.9 Nitrogen regulation protein NR(I) compare
PP_0082 -3.5 -8.0 tryptophan synthase alpha chain compare
PP_1995 -3.4 -10.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0417 -3.2 -16.2 Anthranilate synthase component 1 compare
PP_5015 -3.2 -5.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4724 -3.2 -7.2 Carbamoyl-phosphate synthase small chain compare
PP_1079 -3.1 -9.0 Ornithine carbamoyltransferase compare
PP_0421 -2.9 -7.1 Anthranilate phosphoribosyltransferase compare
PP_0420 -2.9 -11.6 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5155 -2.9 -5.6 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1400 -2.8 -13.9 Alpha-ketoglutarate permease conserved
PP_4678 -2.8 -14.4 Ketol-acid reductoisomerase compare
PP_4680 -2.8 -12.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5128 -2.7 -9.1 Dihydroxy-acid dehydratase compare
PP_4679 -2.7 -7.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0422 -2.7 -4.3 Indole-3-glycerol phosphate synthase compare
PP_1985 -2.7 -5.7 3-isopropylmalate dehydratase large subunit compare
PP_1401 -2.6 -6.4 C4-dicarboxylate transport transcriptional regulatory protein conserved
PP_4909 -2.6 -7.3 phosphoserine phosphatase compare
PP_0967 -2.6 -12.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1402 -2.6 -11.2 C4-dicarboxylate transport sensor protein conserved
PP_4890 -2.6 -6.2 ATP phosphoribosyltransferase regulatory subunit compare
PP_5014 -2.5 -4.7 Phosphoribosyl-AMP cyclohydrolase compare
PP_0293 -2.5 -2.3 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1988 -2.5 -11.1 3-isopropylmalate dehydrogenase compare
PP_0966 -2.4 -8.5 Histidinol dehydrogenase compare
PP_1088 -2.4 -8.0 Argininosuccinate synthase compare
PP_4723 -2.4 -11.5 Carbamoyl-phosphate synthase large chain compare
PP_0289 -2.4 -6.9 Imidazoleglycerol-phosphate dehydratase compare
PP_3999 -2.3 -8.7 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0184 -2.3 -7.0 Argininosuccinate lyase compare
PP_0339 -2.3 -4.4 Pyruvate dehydrogenase E1 component compare
PP_0965 -2.3 -8.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_3511 -2.3 -9.8 Branched-chain-amino-acid aminotransferase compare
PP_0292 -2.2 -3.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_2371 -2.2 -6.7 Sulphite reductase hemoprotein, beta subunit compare
PP_1025 -2.2 -10.5 2-isopropylmalate synthase compare
PP_0290 -2.2 -6.2 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1986 -2.1 -3.7 3-isopropylmalate dehydratase small subunit compare
PP_5185 -2.1 -4.5 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4364 -2.1 -5.4 putative Anti-sigma F factor antagonist compare
PP_4999 -2.0 -2.5 dihydroorotase-like protein compare
PP_5289 -1.9 -3.9 Acetylglutamate kinase compare
PP_5303 -1.9 -5.1 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4700 -1.8 -3.4 pantothenate synthetase compare
PP_3946 -1.6 -1.7 HTH-type transcriptional repressor NicR compare
PP_0164 -1.6 -6.1 conserved protein of unknown function compare
PP_3821 -1.6 -6.7 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4693 -1.5 -4.7 RNA polymerase-binding transcription factor DksA compare
PP_1142 -1.5 -2.0 conserved protein of unknown function compare
PP_2001 -1.5 -7.5 O-succinylhomoserine sulfhydrylase compare
PP_5097 -1.4 -8.4 homoserine O-acetyltransferase compare
PP_4722 -1.4 -4.1 Transcription elongation factor GreA compare
PP_0766 -1.4 -9.8 adhesin-associated sorting protein (DUF1329) (from data) compare
PP_2390 -1.4 -8.2 Transcriptional regulator, LysR family compare
PP_0393 -1.3 -1.9 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_2019 -1.3 -9.5 adhesin-associated MmpL efflux pump (from data) compare
PP_2327 -1.3 -4.1 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1804 -1.3 -7.6 Glycosyl transferase WbpL compare
PP_5098 -1.3 -5.3 methionine biosynthesis protein MetW compare
PP_1912 -1.3 -4.2 Phosphate acyltransferase compare
PP_1656 -1.2 -7.0 ATP:GTP 3'-pyrophosphotransferase compare
PP_0765 -1.2 -9.0 putative adhesin (DUF1302) (from data) compare
PP_0291 -1.2 -2.1 conserved protein of unknown function compare
PP_0959 -1.2 -2.7 phospholipid ABC transporter compare
PP_0914 -1.2 -8.5 GGDEF domain protein compare
PP_3409 -1.2 -3.5 putative Cobalamin biosynthesis protein cobE compare
PP_2370 -1.2 -3.0 conserved protein of unknown function compare
PP_0888 -1.2 -1.9 Photosynthetic apparatus regulatory protein RegA compare
PP_1801 -1.2 -8.2 Glycosyl transferase WbpY compare
PP_1779 -1.2 -3.5 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1802 -1.1 -9.3 glycosyl transferase compare
PP_5085 -1.1 -4.9 malic enzyme B compare
PP_3484 -1.1 -3.9 Response regulator receiver protein compare
PP_4828 -1.1 -1.5 Precorrin-8X methylmutase compare
PP_1780 -1.1 -9.0 putative mannosyltransferase compare
PP_1231 -1.1 -4.0 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1761 -1.0 -6.8 diguanylate cyclase with phosphodiesterase domain compare
PP_1776 -1.0 -8.4 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_0122 -1.0 -2.9 conserved exported protein of unknown function compare
PP_1629 -1.0 -3.9 Protein RecA compare
PP_2018 -1.0 -3.4 adhesin-associated BNR repeat protein (from data) compare
PP_0787 -1.0 -2.8 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1678 -1.0 -2.7 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_4940 -1.0 -3.9 Putative glycosyltransferase compare
PP_1403 -1.0 -5.2 periplasmic beta-D-glucoside glucohydrolase compare
PP_4505 -1.0 -4.2 Sensor histidine kinase compare
PP_0048 -1.0 -1.3 conserved protein of unknown function compare
PP_0127 -1.0 -4.2 Thiol:disulfide interchange protein compare
PP_4480 -1.0 -6.2 arginine N-succinyltransferase, subunit alpha compare
PP_4943 -1.0 -1.1 putative Glycosyl transferase compare
PP_1800 -1.0 -6.8 Oxidoreductase Rmd compare
PP_1799 -0.9 -7.3 GDP-mannose 4,6-dehydratase compare
PP_1314 -0.9 -4.8 putative NAD(P)-linked reductase compare
PP_2291 -0.9 -2.2 conserved protein of unknown function compare
PP_4964 -0.9 -2.0 D-erythrose 4-phosphate dehydrogenase compare
PP_1805 -0.9 -7.6 Polysaccharide biosynthesis protein compare
PP_4937 -0.9 -2.1 toluene tolerance protein compare
PP_0063 -0.9 -2.9 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_3649 -0.9 -2.6 Transcriptional regulator, GntR family compare
PP_t29 -0.9 -1.1 tRNA-Ala compare
PP_5652 -0.9 -1.7 conserved protein of unknown function, phage origin compare
PP_5639 -0.9 -5.0 conserved exported protein of unknown function compare
PP_1528 -0.9 -1.1 conserved protein of unknown function compare
PP_2163 -0.8 -3.9 VacJ lipoprotein compare
PP_3892 -0.8 -1.4 conserved protein of unknown function compare
PP_5533 -0.8 -1.3 conserved protein of unknown function compare
PP_5674 -0.8 -2.3 conserved protein of unknown function compare
PP_4358 -0.8 -4.1 flagellar synthesis, switching and energizing component compare
PP_2274 -0.8 -2.9 conserved protein of unknown function compare
PP_0735 -0.8 -1.5 molybdopterin-synthase adenylyltransferase compare
PP_5093 -0.8 -1.2 twitching motility protein compare
PP_4874 -0.8 -1.0 50S ribosomal protein L9 compare
PP_0003 -0.8 -2.4 16S RNA methyltransferase compare
PP_5232 -0.8 -1.3 conserved protein of unknown function compare
PP_1237 -0.8 -1.1 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_0834 -0.8 -1.2 Sec translocation complex subunit YajC compare
PP_1493 -0.8 -2.7 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_5621 -0.8 -2.1 protein of unknown function compare
PP_2067 -0.7 -3.0 putative EmrB/QacA family drug resistance transporter compare
PP_0572 -0.7 -5.6 peptidoglycan glycosyltransferase compare
PP_4936 -0.7 -3.1 O-antigen polymerase compare
PP_2087 -0.7 -1.4 CmpX protein compare
PP_4768 -0.7 -2.4 Exonuclease compare
PP_3792 -0.7 -2.2 conserved protein of unknown function compare
PP_5023 -0.7 -4.5 Amino acid ABC transporter, permease protein compare
PP_1676 -0.7 -2.8 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_1778 -0.7 -2.9 Lipopolysaccharide ABC export system, permease protein compare
PP_3506 -0.7 -2.1 Magnesium chelatase, subunit ChII compare
PP_1983 -0.7 -4.6 PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase compare
PP_1110 -0.7 -2.0 serine acetyltransferase compare
PP_1366 -0.7 -1.4 Transcriptional regulator MvaT, P16 subunit compare
PP_4213 -0.7 -1.5 putative dipeptidase compare
PP_2032 -0.7 -2.7 putative ATPase compare
PP_2029 -0.7 -1.4 von Willebrand factor type A domain protein compare
PP_3065 -0.7 -2.5 Pyocin R2_PP, tail formation compare
PP_3018 -0.7 -2.5 conserved protein of unknown function compare
PP_2121 -0.6 -1.5 putative Lipoprotein compare
PP_2446 -0.6 -2.5 conserved exported protein of unknown function compare
PP_5453 -0.6 -1.5 conserved protein of unknown function compare
PP_0035 -0.6 -1.3 putative bactoprenol-linked glycose transferase compare
PP_1396 -0.6 -1.8 conserved protein of unknown function compare
PP_4961 -0.6 -1.2 putative Lipoprotein compare
PP_2847 -0.6 -1.3 Urease accessory protein UreJ compare
PP_0674 -0.6 -3.9 ADP/ATP ratio sensor and inhibitor of translation compare
PP_4370 -0.6 -2.0 Flagellar hook-basal body complex protein FliE compare
PP_5090 -0.6 -1.7 putative cell division protein compare
PP_1048 -0.6 -1.6 putative protein secretion protein for export compare
PP_0150 -0.6 -2.1 conserved exported protein of unknown function compare
PP_5666 -0.6 -2.1 putative microcin B17-like processing protein, McbB family compare
PP_3876 -0.6 -2.2 conserved protein of unknown function compare
PP_2105 -0.6 -2.4 conserved protein of unknown function compare
PP_2442 -0.6 -0.8 conserved protein of unknown function, DUF480 family compare
PP_0960 -0.6 -3.1 phospholipid ABC transporter binding protein compare
PP_4227 -0.6 -1.5 conserved protein of unknown function compare
PP_2256 -0.6 -2.2 Transcriptional regulator, Cro/CI family compare
PP_4271 -0.6 -0.8 conserved protein of unknown function compare
PP_2720 -0.6 -0.9 conserved protein of unknown function compare
PP_0313 -0.6 -2.2 putative electron transfer flavoprotein beta subunit compare
PP_3020 -0.6 -1.7 putative Serine/threonine protein phosphatase compare
PP_1536 -0.6 -2.6 conserved protein of unknown function compare
PP_3036 -0.6 -2.6 conserved protein of unknown function compare
PP_4238 -0.6 -2.3 conserved protein of unknown function compare
PP_1813 -0.6 -1.6 ComEA-related protein compare
PP_3435 -0.6 -3.4 conserved protein of unknown function compare
PP_4879 -0.6 -1.9 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
PP_2378 -0.6 -1.3 Fe/S biogenesis protein NfuA compare
PP_4449 -0.6 -2.7 conserved protein of unknown function compare
PP_1512 -0.6 -1.3 conserved protein of unknown function compare
PP_5594 -0.6 -1.5 conserved protein of unknown function compare
PP_5279 -0.6 -1.6 conserved protein of unknown function compare
PP_4695 -0.6 -2.8 Sensory box histidine kinase compare
PP_1672 -0.6 -2.1 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_3102 -0.5 -2.1 conserved protein of unknown function compare
PP_1439 -0.5 -1.5 conserved exported protein of unknown function compare
PP_4685 -0.5 -3.5 conserved protein of unknown function compare
PP_1657 -0.5 -2.9 modified nucleoside triphosphate pyrophosphohydrolase compare
PP_5331 -0.5 -2.1 Long-chain acyl-CoA thioester hydrolase compare
PP_4938 -0.5 -2.9 putative Glycosyl transferase compare
PP_1655 -0.5 -3.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_2088 -0.5 -2.4 RNA polymerase sigma factor SigX compare
PP_5328 -0.5 -1.8 putative phosphate transport system permease protein compare
PP_4368 -0.5 -2.9 flagellar motor switch protein compare
PP_4710 -0.5 -3.9 tRNA pseudouridine 55 synthase compare
PP_4340 -0.5 -2.1 response regulator for chemotactic signal transduction compare
PP_5644 -0.5 -1.4 conserved membrane protein of unknown function compare
PP_5017 -0.5 -0.9 Sec-independent protein translocase protein TatB compare
PP_3294 -0.5 -2.2 Universal stress protein family compare
PP_1860 -0.5 -2.5 Organic hydroperoxide resistance transcriptional regulator compare
PP_1677 -0.5 -2.2 Adenosyl-cobyric acid synthase compare
PP_5240 -0.5 -1.8 Response regulator compare
PP_0366 -0.5 -2.8 dethiobiotin synthetase compare
PP_4469 -0.5 -2.6 ribose 1,5-bisphosphate phosphokinase compare
PP_3901 -0.5 -3.0 conserved protein of unknown function compare
PP_2429 -0.5 -1.5 putative Membrane protein compare
PP_5528 -0.5 -0.9 conserved protein of unknown function compare
PP_3380 -0.5 -1.8 2-ketogluconate utilization repressor compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source a-Ketoglutaric acid disodium salt hydrate in Pseudomonas putida KT2440

For carbon source a-Ketoglutaric acid disodium salt hydrate across organisms