Experiment set10IT043 for Pseudomonas simiae WCS417

Compare to:

rhizosphere sample 1; outgrowth in LB

200 most important genes:

  gene name fitness t score description  
PS417_01575 -7.1 -3.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_18595 -5.6 -3.7 3-isopropylmalate dehydratase compare
PS417_24835 -5.5 -3.8 hypothetical protein compare
PS417_01710 -5.1 -5.0 histidine utilization repressor compare
PS417_13795 -4.8 -6.2 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_06245 -4.2 -2.9 zinc metallopeptidase RseP compare
PS417_13510 -4.1 -1.5 polyketide cyclase compare
PS417_13800 -4.1 -3.6 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_23805 -4.1 -3.7 acetolactate synthase 3 regulatory subunit compare
PS417_04080 -4.0 -2.8 peptide ABC transporter substrate-binding protein compare
PS417_08245 -4.0 -1.4 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_14065 -4.0 -3.6 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_18585 -4.0 -3.9 3-isopropylmalate dehydrogenase compare
PS417_21430 -4.0 -2.7 3-oxoacyl-ACP synthase compare
PS417_18600 -4.0 -2.4 isopropylmalate isomerase compare
PS417_08135 -3.9 -2.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_13790 -3.9 -3.5 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_06780 -3.9 -2.7 TetR family transcriptional regulator compare
PS417_23810 -3.7 -7.2 acetolactate synthase 3 catalytic subunit compare
PS417_01965 -3.7 -2.2 fimbriae biosynthesis protein compare
PS417_12855 -3.7 -2.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_20635 -3.7 -1.3 ABC transporter ATP-binding protein compare
PS417_02975 -3.7 -5.0 3-dehydroquinate dehydratase compare
PS417_22780 -3.7 -2.5 XRE family transcriptional regulator compare
PS417_19695 -3.7 -7.5 flagellar biosynthesis sigma factor compare
PS417_22775 -3.6 -8.1 histidine kinase compare
PS417_27300 -3.6 -1.3 cell division protein ZapA compare
PS417_03310 -3.5 -5.9 carbonate dehydratase compare
PS417_17565 -3.5 -2.3 branched-chain amino acid aminotransferase compare
PS417_22690 -3.5 -2.4 phosphogluconate dehydratase compare
PS417_02510 -3.5 -6.2 ATP phosphoribosyltransferase regulatory subunit compare
PS417_04420 -3.5 -7.8 histidinol dehydrogenase compare
PS417_08365 -3.4 -1.2 hypothetical protein compare
PS417_04390 -3.4 -4.8 toluene tolerance protein compare
PS417_04380 -3.4 -2.1 ABC transporter permease compare
PS417_23545 -3.4 -2.3 gamma-glutamyl kinase compare
PS417_00045 -3.3 -2.1 glycerol acyltransferase compare
PS417_26225 -3.3 -3.2 electron transfer flavoprotein subunit beta compare
PS417_23800 -3.2 -8.1 ketol-acid reductoisomerase compare
PS417_21570 -3.2 -2.9 flagellar basal body rod protein FlgB compare
PS417_16990 -3.2 -4.1 acyl-CoA dehydrogenase compare
PS417_01565 -3.2 -2.3 imidazole glycerol phosphate synthase compare
PS417_28450 -3.2 -2.5 XRE family transcriptional regulator compare
PS417_18390 -3.1 -6.0 LacI family transcriptional regulator compare
PS417_07620 -3.1 -1.3 beta-hexosaminidase compare
PS417_25790 -3.1 -4.1 aminoglycoside phosphotransferase compare
PS417_23375 -3.1 -1.5 cytochrome C oxidase compare
PS417_09085 -3.1 -1.5 hypothetical protein compare
PS417_01855 -3.1 -2.7 phosphoribosyl-AMP cyclohydrolase compare
PS417_19095 -3.1 -1.9 hypothetical protein compare
PS417_06710 -3.1 -1.5 beta-ketoadipyl CoA thiolase compare
PS417_23775 -3.0 -2.1 exodeoxyribonuclease V subunit beta compare
PS417_13805 -3.0 -7.6 4-amino-4-deoxy-L-arabinose transferase compare
PS417_23995 -3.0 -1.1 preprotein translocase subunit SecG compare
PS417_21585 -2.9 -7.2 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_04415 -2.9 -6.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_19860 -2.9 -13.3 flagellar hook protein FlgL compare
PS417_27865 -2.9 -2.9 LysR family transcriptional regulator compare
PS417_27245 -2.9 -2.0 aminotransferase DegT compare
PS417_24710 -2.9 -7.1 lipoprotein compare
PS417_04270 -2.9 -6.7 ribonuclease G compare
PS417_26985 -2.8 -2.4 phosphoenolpyruvate-protein phosphotransferase compare
PS417_13820 -2.8 -2.7 UDP-glucose 6-dehydrogenase compare
PS417_09210 -2.8 -1.7 TetR family transcriptional regulator compare
PS417_02415 -2.8 -3.8 phosphoserine phosphatase compare
PS417_04875 -2.8 -1.4 molybdenum cofactor biosynthesis protein MoaE compare
PS417_01095 -2.8 -1.7 amino acid ABC transporter ATP-binding protein compare
PS417_27040 -2.7 -1.6 3-phosphoglycerate dehydrogenase compare
PS417_26890 -2.7 -4.4 dihydroxy-acid dehydratase compare
PS417_06530 -2.7 -2.5 membrane protein compare
PS417_19675 -2.7 -4.1 chemotaxis protein CheY compare
PS417_02005 -2.7 -8.5 glutamate synthase compare
PS417_26740 -2.6 -6.5 homoserine acetyltransferase compare
PS417_25650 -2.6 -4.0 anhydro-N-acetylmuramic acid kinase compare
PS417_19865 -2.6 -8.4 flagellar hook protein FlgK compare
PS417_06375 -2.6 -0.9 deoxycytidine triphosphate deaminase compare
PS417_22850 -2.6 -7.7 virulence factor family protein compare
PS417_28230 -2.6 -2.5 transcriptional regulator compare
PS417_25710 -2.5 -1.2 indole-3-glycerol-phosphate synthase compare
PS417_16555 -2.5 -1.7 cupin compare
PS417_19880 -2.5 -6.8 flagellar basal body L-ring protein compare
PS417_01920 -2.5 -1.1 ATP-dependent protease subunit HslV compare
PS417_07640 -2.5 -2.0 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_25715 -2.5 -3.4 anthranilate phosphoribosyltransferase compare
PS417_04220 -2.5 -1.3 4-carboxymuconolactone decarboxylase compare
PS417_26745 -2.5 -3.6 methionine biosynthesis protein MetW compare
PS417_18530 -2.4 -4.6 O-succinylhomoserine sulfhydrylase compare
PS417_27795 -2.4 -0.9 orotate phosphoribosyltransferase compare
PS417_01580 -2.4 -1.1 imidazole glycerol phosphate synthase compare
PS417_19740 -2.4 -2.8 flagellar biosynthesis protein flip compare
PS417_12120 -2.4 -3.6 IclR family transcriptional regulator compare
PS417_00185 -2.4 -3.2 tryptophan synthase subunit beta compare
PS417_08125 -2.3 -0.8 prephenate dehydratase compare
PS417_04275 -2.3 -8.6 hypothetical protein compare
PS417_22520 -2.3 -1.5 histidine kinase compare
PS417_19835 -2.3 -1.6 flagellar biosynthesis protein FliS compare
PS417_01850 -2.3 -4.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_21555 -2.2 -6.0 flagellar hook protein FlgE compare
PS417_24785 -2.2 -1.9 nucleoside-diphosphate sugar epimerase compare
PS417_07565 -2.2 -2.1 hypothetical protein compare
PS417_04595 -2.2 -2.1 cell division protein MraZ compare
PS417_17240 -2.2 -3.0 trigger factor compare
PS417_01620 -2.2 -3.0 preprotein translocase subunit SecB compare
PS417_19840 -2.2 -7.9 flagellar cap protein FliD compare
PS417_24745 -2.2 -2.1 gamma-glutamyl phosphate reductase compare
PS417_21830 -2.2 -3.0 TetR family transcriptional regulator compare
PS417_08205 -2.2 -2.9 acetyltransferase compare
PS417_24290 -2.2 -3.2 hypothetical protein compare
PS417_06680 -2.1 -5.9 nuclease PIN compare
PS417_21070 -2.1 -1.9 aconitate hydratase compare
PS417_19755 -2.1 -1.5 flagellar motor switch protein FliM compare
PS417_12005 -2.1 -2.3 hypothetical protein compare
PS417_00845 -2.1 -1.5 transcriptional regulator compare
PS417_19765 -2.1 -3.3 flagellar hook-length control protein compare
PS417_02805 -2.0 -1.1 urease subunit gamma compare
PS417_27445 -2.0 -8.2 membrane protein compare
PS417_19850 -2.0 -6.1 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_10245 -2.0 -1.7 hypothetical protein compare
PS417_20130 -2.0 -6.9 dehydrogenase compare
PS417_19790 -2.0 -1.9 ATP synthase compare
PS417_22450 -2.0 -1.2 ATP-dependent DNA helicase RuvA compare
PS417_27195 -2.0 -1.0 N-acetylglutamate synthase compare
PS417_16475 -2.0 -2.1 camphor resistance protein CrcB compare
PS417_08580 -2.0 -4.7 histidine kinase compare
PS417_20655 -2.0 -6.7 group 1 glycosyl transferase compare
PS417_09245 -2.0 -1.6 recombinase RdgC compare
PS417_08130 -2.0 -1.4 aspartate aminotransferase compare
PS417_21510 -2.0 -1.7 histidine kinase compare
PS417_07170 -2.0 -3.1 hypothetical protein compare
PS417_12200 -2.0 -4.0 microcin ABC transporter permease compare
PS417_16510 -2.0 -2.3 Clp protease ClpX compare
PS417_17705 -1.9 -1.8 LacI family transcriptional regulator compare
PS417_21595 -1.9 -2.9 flagellar biosynthesis protein FlgN compare
PS417_08170 -1.9 -7.2 capsular biosynthesis protein compare
PS417_05840 -1.9 -1.6 LuxR family transcriptional regulator compare
PS417_19650 -1.9 -3.8 chemotaxis protein CheW compare
PS417_02000 -1.9 -7.2 glutamate synthase compare
PS417_12695 -1.9 -4.3 mannitol dehydrogenase compare
PS417_26175 -1.9 -1.0 sarcosine oxidase subunit gamma compare
PS417_00180 -1.9 -1.8 tryptophan synthase subunit alpha compare
PS417_04385 -1.9 -3.4 organic solvent ABC transporter substrate-binding protein compare
PS417_17215 -1.9 -2.1 peptidylprolyl isomerase compare
PS417_04050 -1.9 -1.3 peptide ABC transporter ATP-binding protein compare
PS417_22565 -1.9 -0.7 formyltetrahydrofolate deformylase compare
PS417_26120 -1.8 -1.5 hypothetical protein compare
PS417_26240 -1.8 -1.1 N-methylproline demethylase compare
PS417_27535 -1.8 -4.8 chemotaxis protein CheY compare
PS417_12805 -1.8 -6.5 glycogen branching protein compare
PS417_21565 -1.8 -2.9 flagellar basal body rod protein FlgC compare
PS417_19335 -1.8 -2.0 isochorismatase compare
PS417_18560 -1.8 -4.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_05570 -1.8 -4.7 DeoR faimly transcriptional regulator compare
PS417_11925 -1.8 -2.0 hypothetical protein compare
PS417_11000 -1.8 -3.0 L-arabonate dehydratase (EC 4.2.1.25) (from data) compare
PS417_16195 -1.8 -0.9 AraC family transcriptional regulator compare
PS417_01795 -1.8 -6.5 glucosyltransferase MdoH compare
PS417_05200 -1.8 -2.7 DNA recombination protein RecO compare
PS417_20100 -1.8 -9.3 hypothetical protein compare
PS417_21125 -1.8 -4.9 phosphoadenosine phosphosulfate reductase compare
PS417_25720 -1.8 -4.1 anthranilate synthase component II compare
PS417_00385 -1.8 -0.9 Fur family transcriptional regulator compare
PS417_19690 -1.8 -4.3 histidine kinase compare
PS417_16005 -1.7 -2.1 ATPase compare
PS417_24115 -1.7 -1.5 hypothetical protein compare
PS417_24030 -1.7 -1.7 MFS transporter compare
PS417_23370 -1.7 -2.7 protoheme IX farnesyltransferase compare
PS417_04365 -1.7 -0.9 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_03465 -1.7 -1.0 type III secretion protein compare
PS417_03935 -1.7 -2.1 N-acetyl-anhydromuranmyl-L-alanine amidase compare
PS417_07710 -1.7 -4.4 membrane protein compare
PS417_16515 -1.7 -1.5 Clp protease ClpS compare
PS417_07165 -1.7 -5.1 dihydrodipicolinate synthase compare
PS417_18070 -1.7 -0.9 general secretion pathway protein GspH compare
PS417_19795 -1.7 -3.9 flagellar assembly protein FliH compare
PS417_21630 -1.7 -1.6 magnesium transporter compare
PS417_25270 -1.7 -2.3 NrdR family transcriptional regulator compare
PS417_23110 -1.7 -4.0 2-isopropylmalate synthase compare
PS417_01510 -1.7 -1.6 hypothetical protein compare
PS417_04915 -1.7 -1.4 glutamine ABC transporter ATP-binding protein compare
PS417_22130 -1.7 -4.3 glucose/xylose ABC transporter, ATPase component (from data) compare
PS417_05595 -1.7 -2.5 ornithine carbamoyltransferase compare
PS417_26805 -1.7 -0.8 cell division protein FtsE compare
PS417_26995 -1.6 -4.5 phosphoserine phosphatase compare
PS417_00335 -1.6 -3.6 cytochrome B561 compare
PS417_21575 -1.6 -3.7 chemotaxis protein compare
PS417_21515 -1.6 -6.9 transcriptional regulator compare
PS417_23915 -1.6 -3.5 pantoate--beta-alanine ligase compare
PS417_25725 -1.6 -7.5 anthranilate synthase component I compare
PS417_27305 -1.6 -4.3 5-formyltetrahydrofolate cyclo-ligase compare
PS417_17925 -1.6 -1.8 acyl-CoA dehydrogenase compare
PS417_27870 -1.6 -2.2 ATP-dependent DNA helicase RecG compare
PS417_26730 -1.6 -0.8 pyrroline-5-carboxylate reductase compare
PS417_26770 -1.6 -1.9 tRNA (guanine-N7)-methyltransferase compare
PS417_09300 -1.6 -2.0 peptidylprolyl isomerase compare
PS417_08155 -1.5 -1.0 integration host factor subunit beta compare
PS417_01605 -1.5 -1.1 phosphoglycerate mutase compare
PS417_24800 -1.5 -1.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_16520 -1.5 -1.4 cold-shock protein compare
PS417_25645 -1.5 -2.8 peptidase M23 compare
PS417_19885 -1.5 -1.0 flagellar basal body rod protein FlgG compare


Specific Phenotypes

For 15 genes in this experiment