Experiment set10IT043 for Pseudomonas simiae WCS417

rhizosphere sample 1; outgrowth in LB

Group: rhizosphere
Media:
Culturing: fluoroDangl_ML3, potted plant
By: Dawn Chiniquy on 4-Apr-19

Specific Phenotypes

For 15 genes in this experiment

SEED Subsystems

Subsystem	#Specific
Cysteine Biosynthesis	2
Methionine Biosynthesis	2
Choline and Betaine Uptake and Betaine Biosynthesis	1
Conserved gene cluster possibly involved in RNA metabolism	1
Maltose and Maltodextrin Utilization	1
Thiamin biosynthesis	1
Trehalose Biosynthesis	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Cysteine metabolism
• Sulfur metabolism
• Selenoamino acid metabolism
• Starch and sucrose metabolism
• Glycosaminoglycan degradation

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
L-cysteine biosynthesis I	2	2	2
seleno-amino acid biosynthesis (plants)	5	3	2
L-cysteine biosynthesis VII (from S-sulfo-L-cysteine)	4	3	1
N-3-oxalyl-L-2,3-diaminopropanoate biosynthesis	4	1	1
superpathway of sulfate assimilation and cysteine biosynthesis	9	9	2
thiazole component of thiamine diphosphate biosynthesis I	6	4	1
D-cycloserine biosynthesis	6	1	1
hydrogen sulfide biosynthesis II (mammalian)	6	1	1
thiazole component of thiamine diphosphate biosynthesis II	7	5	1
L-cysteine biosynthesis VI (reverse transsulfuration)	7	2	1
superpathway of seleno-compound metabolism	19	8	2
superpathway of thiamine diphosphate biosynthesis I	10	8	1
superpathway of thiamine diphosphate biosynthesis II	11	9	1