Experiment set10IT043 for Pseudomonas putida KT2440

Compare to:

Sodium succinate dibasic hexahydrate carbon source

200 most important genes:

  gene name fitness t score description  
PP_1985 -5.0 -7.2 3-isopropylmalate dehydratase large subunit compare
PP_0082 -4.9 -6.8 tryptophan synthase alpha chain compare
PP_0293 -4.9 -4.2 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1986 -4.5 -4.8 3-isopropylmalate dehydratase small subunit compare
PP_1988 -4.3 -12.3 3-isopropylmalate dehydrogenase compare
PP_1079 -4.2 -7.6 Ornithine carbamoyltransferase compare
PP_0422 -4.1 -7.0 Indole-3-glycerol phosphate synthase compare
PP_5015 -4.1 -6.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4680 -4.1 -16.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0290 -3.9 -8.1 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0967 -3.9 -9.9 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0691 -3.8 -6.0 Glutamate 5-kinase compare
PP_0083 -3.8 -9.7 tryptophan synthase beta chain compare
PP_4678 -3.7 -15.2 Ketol-acid reductoisomerase compare
PP_5289 -3.7 -6.2 Acetylglutamate kinase compare
PP_4679 -3.6 -6.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0289 -3.6 -6.0 Imidazoleglycerol-phosphate dehydratase compare
PP_4723 -3.5 -15.1 Carbamoyl-phosphate synthase large chain compare
PP_4909 -3.5 -8.0 phosphoserine phosphatase compare
PP_0965 -3.5 -12.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_2370 -3.4 -5.6 conserved protein of unknown function compare
PP_5128 -3.3 -7.7 Dihydroxy-acid dehydratase compare
PP_0417 -3.2 -16.5 Anthranilate synthase component 1 compare
PP_3511 -3.1 -8.2 Branched-chain-amino-acid aminotransferase compare
PP_5095 -3.1 -3.2 pyrroline-5-carboxylate reductase compare
PP_1025 -3.0 -12.3 2-isopropylmalate synthase compare
PP_0966 -3.0 -10.6 Histidinol dehydrogenase compare
PP_3999 -3.0 -9.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5155 -2.9 -5.6 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0421 -2.9 -8.1 Anthranilate phosphoribosyltransferase compare
PP_4724 -2.9 -7.5 Carbamoyl-phosphate synthase small chain compare
PP_1088 -2.8 -10.6 Argininosuccinate synthase compare
PP_0184 -2.8 -7.8 Argininosuccinate lyase compare
PP_1188 -2.8 -8.7 C4-dicarboxylate transport protein conserved
PP_0420 -2.7 -9.9 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0339 -2.6 -4.4 Pyruvate dehydrogenase E1 component compare
PP_4890 -2.6 -8.2 ATP phosphoribosyltransferase regulatory subunit compare
PP_5097 -2.6 -13.1 homoserine O-acetyltransferase compare
PP_1995 -2.6 -7.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_2328 -2.4 -6.7 Phosphoadenosine phosphosulfate reductase compare
PP_0292 -2.3 -3.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_2371 -2.3 -6.8 Sulphite reductase hemoprotein, beta subunit compare
PP_0787 -2.3 -5.4 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5185 -2.3 -5.4 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4700 -2.3 -4.0 pantothenate synthetase compare
PP_0291 -2.3 -3.1 conserved protein of unknown function compare
PP_5098 -2.2 -7.2 methionine biosynthesis protein MetW compare
PP_5303 -2.2 -5.2 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_2378 -2.1 -3.6 Fe/S biogenesis protein NfuA compare
PP_2327 -2.1 -6.0 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0833 -2.1 -2.7 queuine tRNA-ribosyltransferase compare
PP_2001 -2.0 -8.6 O-succinylhomoserine sulfhydrylase compare
PP_1912 -1.9 -6.5 Phosphate acyltransferase compare
PP_4364 -1.8 -5.1 putative Anti-sigma F factor antagonist compare
PP_0263 -1.8 -6.9 C4-dicarboxylate transport transcriptional regulatory protein conserved
PP_5014 -1.8 -2.6 Phosphoribosyl-AMP cyclohydrolase compare
PP_3821 -1.7 -7.7 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4693 -1.7 -5.2 RNA polymerase-binding transcription factor DksA compare
PP_4999 -1.7 -2.4 dihydroorotase-like protein compare
PP_5085 -1.7 -6.2 malic enzyme B compare
PP_1231 -1.6 -5.5 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_3409 -1.6 -3.6 putative Cobalamin biosynthesis protein cobE compare
PP_1664 -1.4 -3.3 phosphoribosylglycinamide formyltransferase 1 compare
PP_0566 -1.3 -1.3 translation-related factor compare
PP_3484 -1.3 -6.1 Response regulator receiver protein compare
PP_4696 -1.3 -4.4 Nitrogen regulation protein NR(I) compare
PP_4964 -1.3 -3.0 D-erythrose 4-phosphate dehydrogenase compare
PP_4943 -1.3 -1.5 putative Glycosyl transferase compare
PP_4480 -1.2 -6.4 arginine N-succinyltransferase, subunit alpha compare
PP_4952 -1.2 -1.7 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_4122 -1.2 -1.1 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_5705 -1.1 -2.8 protein of unknown function compare
PP_4213 -1.1 -2.7 putative dipeptidase compare
PP_0914 -1.1 -7.7 GGDEF domain protein compare
PP_1493 -1.1 -2.8 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0264 -1.1 -4.6 Sensor histidine kinase compare
PP_4121 -1.0 -3.2 NADH-quinone oxidoreductase subunit C/D compare
PP_1677 -1.0 -4.3 Adenosyl-cobyric acid synthase compare
PP_1783 -1.0 -1.1 dTDP-glucose pyrophosphorylase compare
PP_1673 -1.0 -5.1 cobyrinate a,c-diamide synthase compare
PP_0393 -1.0 -1.7 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_2402 -1.0 -1.7 putative Sensor histidine kinase compare
PP_4940 -1.0 -4.8 Putative glycosyltransferase compare
PP_4262 -0.9 -2.5 Cytochrome oxidase maturation protein, cbb3-type compare
PP_4481 -0.9 -5.0 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_0127 -0.9 -3.8 Thiol:disulfide interchange protein compare
PP_5227 -0.9 -4.8 diaminopimelate decarboxylase compare
PP_0164 -0.9 -4.7 conserved protein of unknown function compare
PP_2847 -0.8 -1.3 Urease accessory protein UreJ compare
PP_5639 -0.8 -4.8 conserved exported protein of unknown function compare
PP_4937 -0.8 -2.9 toluene tolerance protein compare
PP_4895 -0.8 -2.1 tRNA dimethylallyltransferase compare
PP_4253 -0.8 -2.2 cytochrome c oxidase subunit, cbb3-type compare
PP_3506 -0.8 -2.5 Magnesium chelatase, subunit ChII compare
PP_0834 -0.8 -1.3 Sec translocation complex subunit YajC compare
PP_2032 -0.8 -2.8 putative ATPase compare
PP_2029 -0.8 -2.2 von Willebrand factor type A domain protein compare
PP_1233 -0.8 -3.0 sulfurtransferase compare
PP_1672 -0.7 -3.2 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_2160 -0.7 -2.4 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_5486 -0.7 -1.9 conserved protein of unknown function compare
PP_1814 -0.7 -3.4 conserved protein of unknown function compare
PP_2290 -0.7 -2.8 conserved protein of unknown function compare
PP_3902 -0.7 -1.5 conserved protein of unknown function compare
PP_1426 -0.7 -5.4 L-aspartate oxidase compare
PP_1654 -0.7 -2.1 cysteine synthase B compare
PP_1994 -0.7 -0.9 tRNA pseudouridine (38-40)synthase compare
PP_1679 -0.7 -2.4 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_5508 -0.7 -1.1 conserved protein of unknown function compare
PP_5558 -0.7 -1.7 putative transcriptional xre family of phage origin compare
PP_3312 -0.7 -1.7 putative Heat shock protein compare
PP_5104 -0.7 -3.5 thiazole synthase compare
PP_3580 -0.7 -1.9 conserved protein of unknown function compare
PP_0719 -0.7 -0.8 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_2387 -0.7 -1.7 conserved protein of unknown function compare
PP_4317 -0.6 -2.1 conserved protein of unknown function compare
PP_1303 -0.6 -3.8 Sulfate adenylyltransferase subunit 2 compare
PP_3898 -0.6 -2.7 conserved protein of unknown function compare
PP_5338 -0.6 -1.4 aspartate ammonia-lyase compare
PP_2573 -0.6 -2.6 conserved protein of unknown function compare
PP_4808 -0.6 -1.2 23S rRNA m3psi1915 methyltransferase compare
PP_2090 -0.6 -2.4 Uroporphyrinogen-III C-methyltransferase compare
PP_1304 -0.6 -3.7 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_1038 -0.6 -1.4 conserved protein of unknown function compare
PP_5331 -0.6 -1.8 Long-chain acyl-CoA thioester hydrolase compare
PP_4120 -0.6 -1.8 NADH-quinone oxidoreductase subunit B compare
PP_0957 -0.6 -1.3 D-arabinose 5-phosphate isomerase compare
PP_1790 -0.6 -2.9 putative Acylneuraminate cytidylyltransferase compare
PP_2414 -0.6 -0.6 conserved exported protein of unknown function compare
PP_1676 -0.6 -3.0 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_2530 -0.6 -1.8 conserved protein of unknown function compare
PP_2345 -0.6 -1.9 conserved exported protein of unknown function compare
PP_4268 -0.6 -0.8 nucleoid-associated broad specificity regulator compare
PP_1366 -0.6 -1.4 Transcriptional regulator MvaT, P16 subunit compare
PP_3307 -0.6 -1.3 conserved protein of unknown function compare
PP_4699 -0.6 -2.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_3505 -0.6 -1.5 conserved protein of unknown function compare
PP_3926 -0.6 -1.2 short-chain dehydrogenase compare
PP_1678 -0.6 -2.0 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_2253 -0.6 -0.9 Transcriptional regulator, GntR family compare
PP_3730 -0.6 -1.6 Transcriptional regulatory protein AruR compare
PP_5048 -0.6 -3.0 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_2138 -0.6 -2.7 conserved protein of unknown function compare
PP_1841 -0.6 -2.6 Cytochrome c family protein compare
PP_0065 -0.6 -1.2 NAD-binding component of TrK potassium transporter compare
PP_4829 -0.5 -1.3 putative precorrin-3B synthase compare
PP_5582 -0.5 -1.0 conserved protein of unknown function compare
PP_2747 -0.5 -1.3 conserved protein of unknown function compare
PP_3065 -0.5 -2.8 Pyocin R2_PP, tail formation compare
PP_2181 -0.5 -1.8 Transcriptional regulator, Cro/CI family compare
PP_1008 -0.5 -1.6 RNA polymerase subunit sigma-24 compare
PP_1552 -0.5 -2.1 putative Phage replication protein compare
PP_0262 -0.5 -2.3 conserved protein of unknown function compare
PP_2388 -0.5 -1.8 Transporter, LysE family compare
PP_5039 -0.5 -1.3 conserved protein of unknown function compare
PP_3539 -0.5 -1.5 putative Transcriptional regulator compare
PP_1216 -0.5 -1.2 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_2907 -0.5 -2.1 DNA-binding response regulator compare
PP_2140 -0.5 -2.3 conserved protein of unknown function compare
PP_2504 -0.5 -2.0 putative tautomerase K2 compare
PP_2826 -0.5 -0.9 Transcriptional regulator MexT compare
PP_0246 -0.5 -1.3 two-component system DNA-binding response transcriptional dual regulator compare
PP_4479 -0.5 -2.0 arginine N-succinyltransferase, subunit beta compare
PP_3855 -0.5 -2.1 conserved protein of unknown function compare
PP_1489 -0.5 -1.2 CheW domain protein compare
PP_0484 -0.5 -2.7 transporter of an unknown substrate compare
PP_3244 -0.5 -2.4 Magnesium transporter, MgtC family compare
PP_0757 -0.5 -2.3 conserved protein of unknown function compare
PP_2347 -0.5 -2.2 DNA-binding response regulator compare
PP_5528 -0.5 -1.3 conserved protein of unknown function compare
PP_5580 -0.5 -0.8 protein of unknown function compare
PP_1387 -0.5 -1.7 Probable HTH-type transcriptional regulator TtgR compare
PP_5495 -0.5 -1.2 protein of unknown function compare
PP_1082 -0.5 -1.8 bacterioferritin compare
PP_4827 -0.5 -3.2 Precorrin-2 C(20)-methyltransferase compare
PP_4799 -0.5 -1.5 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4358 -0.5 -2.1 flagellar synthesis, switching and energizing component compare
PP_0782 -0.5 -2.0 conserved protein of unknown function compare
PP_0305 -0.5 -1.8 HTH-type transcriptional regulator CdhR compare
PP_1428 -0.5 -0.6 Sigma factor AlgU negative regulatory protein compare
PP_4263 -0.5 -1.8 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_4387 -0.5 -1.2 conserved exported protein of unknown function compare
PP_4701 -0.5 -0.6 glucose-6-phosphate isomerase compare
PP_4340 -0.5 -1.9 response regulator for chemotactic signal transduction compare
PP_1935 -0.5 -1.2 Transcriptional regulator, Cro/CI family compare
PP_4368 -0.5 -3.0 flagellar motor switch protein compare
PP_4830 -0.5 -2.1 precorrin-6Y C(5,15)-methyltransferase compare
PP_5216 -0.5 -1.6 exopolyphosphatase compare
PP_3726 -0.5 -0.8 Enoyl-CoA hydratase/isomerase family protein compare
PP_5475 -0.5 -1.0 conserved protein of unknown function compare
PP_5253 -0.5 -1.1 Arylesterase compare
PP_3014 -0.5 -1.1 conserved exported protein of unknown function compare
PP_5571 -0.5 -0.8 conserved protein of unknown function compare
PP_2375 -0.5 -3.4 cobalamin-dependent methionine synthase compare
PP_2899 -0.5 -0.8 conserved exported protein of unknown function compare
PP_2462 -0.5 -1.0 conserved protein of unknown function compare
PP_2256 -0.5 -1.6 Transcriptional regulator, Cro/CI family compare
PP_2547 -0.5 -1.2 Transcriptional regulator, LysR family compare
PP_0364 -0.5 -3.1 pimeloyl-[acp] methyl ester esterase compare
PP_2615 -0.5 -1.1 hemolysin-coregulated protein compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Sodium succinate dibasic hexahydrate in Pseudomonas putida KT2440

For carbon source Sodium succinate dibasic hexahydrate across organisms