Experiment set10IT043 for Agrobacterium fabrum C58

Compare to:

4-Hydroxybenzoic Acid carbon source

200 most important genes:

  gene name fitness t score description  
Atu1687 -6.6 -10.1 anthranilate phosphoribosyltransferase compare
Atu0035 -6.6 -12.6 phosphoenolpyruvate carboxykinase compare
Atu3707 -6.0 -4.1 phosphoserine aminotransferase compare
Atu0017 -5.7 -4.0 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0099 -5.5 -13.8 prephenate dehydratase compare
Atu1620 -5.4 -13.9 triosephosphate isomerase compare
Atu1588 -5.4 -10.9 homoserine dehydrogenase compare
Atu0038 -5.2 -7.1 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu3740 -5.2 -11.6 fructose bisphosphate aldolase compare
Atu1688 -5.1 -7.0 indole-3-glycerol-phosphate synthase compare
Atu0678 -5.1 -8.5 histidyl-tRNA synthetase compare
Atu1850 -5.1 -6.9 phosphoribosylformylglycinamidine synthetase II compare
Atu3754 -5.1 -8.5 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1030 -5.0 -3.4 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0537 -4.9 -8.9 histidinol dehydrogenase compare
Atu0041 -4.9 -3.4 glutamine amidotransferase compare
Atu2036 -4.9 -17.4 acetolactate synthase III, large subunit compare
Atu2718 -4.9 -10.5 homoserine O-succinyltransferase compare
Atu2289 -4.9 -20.8 anthranilate synthase component I and II compare
Atu0679 -4.9 -7.4 ATP phosphoribosyltransferase compare
Atu1141 -4.8 -10.3 Phosphoribosylglycinamide synthetase compare
Atu2791 -4.8 -10.6 3-isopropylmalate dehydrogenase compare
Atu1750 -4.8 -7.7 phosphoribosyl c-AMP cyclohydrolase compare
Atu0432 -4.8 -11.5 O-succinylhomoserine sulfhydrylase compare
Atu3706 -4.7 -11.0 D-3-phosphoglycerate dehydrogenase compare
Atu0399 -4.7 -9.1 dihydroorotase compare
Atu2040 -4.7 -6.4 phosphoserine phosphatase compare
Atu0043 -4.7 -3.2 imidazoleglycerol-phosphate dehydratase compare
Atu1205 -4.6 -16.0 threonine dehydratase compare
Atu3469 -4.6 -3.1 phosphoglyceromutase compare
Atu2747 -4.5 -12.1 hypothetical protein compare
Atu3739 -4.5 -4.0 phosphoglycerate kinase compare
Atu2709 -4.5 -19.5 3-isopropylmalate dehydratase, large subunit compare
Atu2264 -4.5 -12.7 2-isopropylmalate synthase compare
Atu3885 -4.4 -8.6 inositol monophosphatase compare
Atu4549 -4.4 -13.7 beta-ketoadipyl CoA thiolase conserved
Atu0400 -4.4 -6.2 orotate phosphoribosyltransferase compare
Atu4541 -4.3 -6.2 carboxymuconolactone decarboxylase compare
Atu4538 -4.3 -15.5 3-carboxy-cis,cis-muconate cycloisomerase compare
Atu3783 -4.3 -15.4 glutamate synthase subunit beta compare
Atu4548 -4.1 -11.7 3-oxoadipate CoA-transferase subunit B conserved
Atu4547 -4.0 -13.8 3-oxoadipate CoA-transferase subunit A conserved
Atu4505 -4.0 -11.9 LacI family transcriptional regulator compare
Atu3784 -4.0 -24.9 glutamate synthase large subunit compare
Atu0039 -4.0 -3.8 imidazoleglycerol-phosphate synthase cyclase compare
Atu0298 -3.9 -10.7 orotidine 5 compare
Atu3755 -3.9 -6.4 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu2115 -3.8 -13.1 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu0723 -3.8 -2.6 FAD dependent oxidoreductase compare
Atu1307 -3.8 -7.3 dihydroorotase compare
Atu1075 -3.7 -9.7 amidophosphoribosyltransferase compare
Atu1140 -3.7 -7.9 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1844 -3.7 -3.8 Phosphoribosylformylglycinamidine synthetase compare
Atu0486 -3.6 -8.5 dihydroorotate dehydrogenase compare
Atu0803 -3.5 -20.5 pyruvate,orthophosphate dikinase compare
Atu0536 -3.4 -6.9 hypothetical protein compare
Atu2790 -3.4 -2.9 3-isopropylmalate dehydratase, small subunit compare
Atu1686 -3.3 -16.4 peptidyl-prolyl cis-trans isomerse D compare
Atu2015 -3.3 -12.6 aminotransferase compare
Atu0647 -3.3 -9.6 phosphoribosylamine--glycine ligase compare
Atu1359 -3.3 -2.0 dnaK deletion suppressor protein compare
Atu3483 -3.2 -8.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu0040 -3.2 -1.9 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu1308 -3.2 -8.9 aspartate carbamoyl transferase catalytic subunit compare
Atu1845 -3.2 -6.1 phosphoribosylformylglycinamidine synthase I compare
Atu3731 -3.1 -11.8 5-formyltetrahydrofolate cyclo-ligase compare
Atu3482 -3.0 -7.8 pantoate--beta-alanine ligase compare
Atu4542 -2.8 -13.0 beta-ketoadipate enol-lactone hydrolase conserved
Atu2650 -2.7 -10.7 glycerol-3-phosphate dehydrogenase compare
Atu1685 -2.6 -2.0 hypothetical protein compare
Atu1589 -2.6 -7.0 aminotransferase, class I compare
Atu0030 -2.5 -2.6 phosphocarrier protein HPr compare
Atu3486 -2.4 -4.4 DeoR family transcriptional regulator compare
Atu1446 -2.4 -3.6 two component response regulator compare
Atu1455 -2.2 -3.3 hypothetical protein compare
Atu2205 -2.1 -6.1 transcriptional regulator, MarR family compare
Atu4539 -2.0 -11.2 protocatechuate 3,4-dioxygenase alpha chain conserved
Atu1456 -2.0 -10.1 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu2020 -2.0 -3.5 transcriptional regulator, TetR family compare
Atu2684 -1.9 -2.9 hypothetical protein compare
Atu2493 -1.9 -13.0 NAD(P)+ transhydrogenase compare
Atu2548 -1.8 -11.3 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu3763 -1.7 -1.8 hypothetical protein compare
Atu4773 -1.7 -2.4 two component response regulator compare
Atu1454 -1.7 -8.2 siroheme synthase compare
Atu1810 -1.7 -1.7 hypothetical protein compare
Atu4217 -1.7 -1.8 TetR family transcriptional regulator compare
Atu0029 -1.7 -6.9 S-adenosylhomocysteine hydrolase compare
Atu6098 -1.7 -1.6 transcriptional regulator, HTH family compare
Atu0671 -1.6 -4.9 hypothetical protein compare
Atu2494 -1.6 -8.5 NAD(P)+ transhydrogenase beta chain compare
Atu1028 -1.5 -4.0 hypothetical protein compare
Atu2207 -1.5 -3.0 two component sensor kinase compare
Atu4098 -1.4 -9.8 quinolinate synthetase compare
Atu3017 -1.4 -1.8 phosphoglyceromutase compare
Atu0502 -1.4 -6.0 acetyl-CoA acetyltransferase compare
Atu8115 -1.4 -4.7 Hypothetical Protein compare
Atu2155 -1.4 -11.1 methionine synthase compare
Atu2554 -1.4 -2.9 lysyl-tRNA synthetase compare
Atu0047 -1.4 -9.4 malate synthase G compare
Atu1369 -1.3 -6.0 HIT family protein compare
Atu3732 -1.3 -5.9 hemolysin compare
Atu5125 -1.3 -4.3 GntR family transcriptional regulator compare
Atu0641 -1.3 -4.3 hypothetical protein compare
Atu2640 -1.2 -3.2 hypothetical protein compare
Atu0876 -1.2 -1.5 superoxide dismutase compare
Atu6114 -1.2 -2.0 hypothetical protein compare
Atu0149 -1.2 -2.7 enoyl-(acyl-carrier-protein) reductase compare
Atu3999 -1.2 -2.8 dithiobiotin synthetase compare
Atu2184 -1.2 -5.0 transcriptional regulator, AsnC family compare
Atu5430 -1.2 -1.9 hypothetical protein compare
Atu2831 -1.2 -3.0 glucose inhibited division protein A compare
Atu2209 -1.2 -4.5 pyrroline-5-carboxylate reductase compare
Atu1904 -1.2 -2.5 transcriptional regulator compare
Atu0331 -1.2 -2.2 sigma-54 modulation protein compare
Atu4540 -1.2 -2.9 protocatechuate 3,4-dioxygenase subunit beta compare
Atu0503 -1.2 -7.9 enoyl-CoA hydratase compare
Atu3718 -1.2 -5.2 hypothetical protein compare
Atu2555 -1.2 -2.4 L-lysine 2,3-aminomutase compare
Atu1464 -1.2 -6.4 glycine cleavage system T protein, aminomethyltransferase compare
Atu0354 -1.2 -2.2 ferric uptake regulator compare
Atu1462 -1.1 -7.9 glycine cleavage system protein P2 compare
Atu0361 -1.1 -2.7 transcriptional regulator compare
Atu4546 -1.1 -3.5 IclR family transcriptional regulator compare
Atu3183 -1.1 -1.1 hypothetical protein compare
Atu0501 -1.1 -7.0 acyl-CoA dehydrogenase compare
Atu1163 -1.1 -2.5 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu2249 -1.1 -1.5 hypothetical protein compare
Atu2745 -1.1 -8.8 acetyl-coenzyme A synthetase compare
Atu2634 -1.0 -2.3 hypothetical protein compare
Atu0434 -1.0 -1.9 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu1526 -1.0 -6.6 6-phosphogluconate dehydrogenase, decarboxylating compare
Atu4096 -1.0 -4.5 nicotinate-nucleotide pyrophosphorylase compare
Atu0422 -1.0 -1.7 ABC transporter, membrane spanning protein compare
Atu2125 -1.0 -1.4 ABC transporter, nucleotide binding/ATPase protein compare
Atu4545 -1.0 -5.5 AraC family transcriptional regulator compare
Atu4543 -1.0 -4.6 LysR family transcriptional regulator conserved
Atu3627 -1.0 -1.7 hypothetical protein compare
Atu0607 -0.9 -6.7 isocitrate lyase compare
Atu0608 -0.9 -7.1 transcriptional regulator compare
Atu2225 -0.9 -5.3 transcriptional regulator compare
Atu2726 -0.9 -7.9 pyruvate carboxylase compare
Atu0894 -0.9 -1.9 ABC transporter, membrane spanning protein compare
Atu0107 -0.9 -2.5 hypothetical protein compare
Atu4530 -0.9 -4.4 TetR family transcriptional regulator compare
Atu1774 -0.9 -4.4 ABC transporter, substrate binding protein (peptide) compare
Atu0188 -0.9 -2.6 ABC transporter, membrane spanning protein (peptide) compare
Atu2746 -0.9 -1.4 hypothetical protein compare
Atu3121 -0.9 -1.0 cold shock protein compare
Atu2193 -0.9 -1.0 hypothetical protein compare
Atu4502 -0.9 -4.2 cobalamin synthesis protein compare
Atu0809 -0.9 -1.6 hypothetical protein compare
Atu1646 -0.9 -3.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu2224 -0.8 -4.5 aldehyde dehydrogenase compare
Atu2793 -0.8 -2.9 cobyrinic acid a,c-diamide synthase compare
Atu4711 -0.8 -3.9 two component sensor kinase compare
Atu1902 -0.8 -3.6 transketolase compare
Atu0062 -0.8 -3.8 transcriptional regulator, ROK family compare
Atu4544 -0.8 -5.1 4-hydroxybenzoate 3-monooxygenase compare
Atu2821 -0.8 -2.7 transcriptional regulator, GntR family compare
Atu1748 -0.8 -5.1 NIFU-like protein compare
Atu0981 -0.8 -5.1 glutamate-ammonia-ligase adenylyltransferase compare
Atu4097 -0.8 -4.6 L-aspartate oxidase compare
Atu1463 -0.8 -4.1 glycine cleavage system component H compare
Atu3727 -0.8 -3.3 hypothetical protein compare
Atu2633 -0.8 -1.7 RhtB family transporter compare
Atu3120 -0.8 -0.9 hypothetical protein compare
Atu0401 -0.8 -3.2 fructokinase compare
Atu0895 -0.8 -1.4 ABC transporter, substrate binding protein compare
Atu4616 -0.8 -1.4 dTDP-4-dehydrorhamnose reductase compare
Atu1225 -0.8 -1.1 hypothetical protein compare
Atu4099 -0.8 -3.7 hypothetical protein compare
Atu0953 -0.7 -1.0 hypothetical protein compare
Atu1644 -0.7 -2.0 hypothetical protein compare
Atu1770 -0.7 -3.8 glutamine synthetase compare
Atu3290 -0.7 -3.8 phosphomethylpyrimidine kinase compare
Atu0601 -0.7 -4.9 oxidoreductase compare
Atu2728 -0.7 -2.8 beta (1-->2) glucan export ATP-binding protein compare
Atu4317 -0.7 -1.8 TetR family transcriptional regulator compare
Atu3963 -0.7 -4.6 GntR family transcriptional regulator compare
Atu0626 -0.7 -4.2 alcohol dehydrogenase compare
Atu3337 -0.7 -4.0 LacI family transcriptional regulator compare
Atu1405 -0.7 -3.1 transcriptional regulator, GntR family compare
Atu4346 -0.7 -2.4 hypothetical protein compare
Atu2267 -0.7 -3.6 hypothetical protein compare
Atu3289 -0.7 -1.6 thiamine-phosphate pyrophosphorylase compare
Atu3288 -0.7 -2.9 hydroxyethylthiazole kinase compare
Atu4514 -0.7 -2.6 RpiR family transcriptional regulator compare
Atu1592 -0.7 -3.7 hypothetical protein compare
Atu1572 -0.7 -3.6 hydrolase compare
Atu1185 -0.7 -1.8 hypothetical protein compare
Atu1439 -0.7 -1.3 hypothetical protein compare
Atu0807 -0.7 -3.3 metallo-beta-lactamase superfamily protein compare
Atu3750 -0.7 -1.7 thiamine-phosphate pyrophosphorylase compare
Atu2660 -0.7 -1.2 hypothetical protein compare
Atu3162 -0.7 -3.4 LacI family transcriptional regulator compare
Atu1445 -0.7 -2.7 two component sensor kinase compare
Atu4161 -0.7 -1.7 hypothetical protein compare
Atu8056 -0.6 -0.9 hypothetical protein compare
Atu5540 -0.6 -0.9 hypothetical protein compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source 4-Hydroxybenzoic Acid in Agrobacterium fabrum C58

For carbon source 4-Hydroxybenzoic Acid across organisms