Experiment set10IT042 for Agrobacterium fabrum C58

Compare to:

4-Hydroxybenzoic Acid carbon source

200 most important genes:

  gene name fitness t score description  
Atu1850 -6.4 -6.2 phosphoribosylformylglycinamidine synthetase II compare
Atu3707 -6.0 -4.1 phosphoserine aminotransferase compare
Atu2791 -5.7 -9.5 3-isopropylmalate dehydrogenase compare
Atu1845 -5.5 -6.5 phosphoribosylformylglycinamidine synthase I compare
Atu1075 -5.3 -10.1 amidophosphoribosyltransferase compare
Atu1588 -5.0 -11.2 homoserine dehydrogenase compare
Atu0432 -5.0 -12.0 O-succinylhomoserine sulfhydrylase compare
Atu0041 -4.9 -3.4 glutamine amidotransferase compare
Atu1687 -4.9 -11.6 anthranilate phosphoribosyltransferase compare
Atu1688 -4.7 -9.6 indole-3-glycerol-phosphate synthase compare
Atu1620 -4.7 -14.3 triosephosphate isomerase compare
Atu0039 -4.7 -3.2 imidazoleglycerol-phosphate synthase cyclase compare
Atu2264 -4.6 -14.5 2-isopropylmalate synthase compare
Atu2718 -4.6 -10.6 homoserine O-succinyltransferase compare
Atu3740 -4.5 -12.3 fructose bisphosphate aldolase compare
Atu2709 -4.5 -20.1 3-isopropylmalate dehydratase, large subunit compare
Atu0537 -4.5 -8.5 histidinol dehydrogenase compare
Atu2040 -4.4 -7.3 phosphoserine phosphatase compare
Atu2289 -4.4 -18.7 anthranilate synthase component I and II compare
Atu1307 -4.4 -9.0 dihydroorotase compare
Atu3754 -4.3 -7.9 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0035 -4.3 -12.8 phosphoenolpyruvate carboxykinase compare
Atu4538 -4.3 -17.2 3-carboxy-cis,cis-muconate cycloisomerase compare
Atu0099 -4.3 -11.1 prephenate dehydratase compare
Atu1205 -4.3 -17.4 threonine dehydratase compare
Atu3706 -4.2 -10.8 D-3-phosphoglycerate dehydrogenase compare
Atu0679 -4.2 -8.0 ATP phosphoribosyltransferase compare
Atu1750 -4.2 -6.1 phosphoribosyl c-AMP cyclohydrolase compare
Atu1140 -4.0 -7.1 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu4549 -4.0 -13.0 beta-ketoadipyl CoA thiolase conserved
Atu3783 -4.0 -13.9 glutamate synthase subunit beta compare
Atu0043 -4.0 -3.9 imidazoleglycerol-phosphate dehydratase compare
Atu2036 -4.0 -17.5 acetolactate synthase III, large subunit compare
Atu3885 -3.9 -11.9 inositol monophosphatase compare
Atu0038 -3.9 -6.1 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0647 -3.9 -9.9 phosphoribosylamine--glycine ligase compare
Atu2115 -3.9 -13.5 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu0298 -3.8 -11.1 orotidine 5 compare
Atu4505 -3.8 -9.6 LacI family transcriptional regulator compare
Atu0017 -3.8 -5.1 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0723 -3.8 -2.6 FAD dependent oxidoreductase compare
Atu4547 -3.8 -12.5 3-oxoadipate CoA-transferase subunit A conserved
Atu4548 -3.7 -15.1 3-oxoadipate CoA-transferase subunit B conserved
Atu4541 -3.7 -6.9 carboxymuconolactone decarboxylase compare
Atu3784 -3.7 -23.0 glutamate synthase large subunit compare
Atu1844 -3.6 -5.1 Phosphoribosylformylglycinamidine synthetase compare
Atu3739 -3.5 -4.0 phosphoglycerate kinase compare
Atu3482 -3.5 -7.6 pantoate--beta-alanine ligase compare
Atu2747 -3.5 -10.3 hypothetical protein compare
Atu0678 -3.5 -9.1 histidyl-tRNA synthetase compare
Atu1141 -3.4 -8.5 Phosphoribosylglycinamide synthetase compare
Atu0536 -3.4 -6.4 hypothetical protein compare
Atu2790 -3.3 -2.9 3-isopropylmalate dehydratase, small subunit compare
Atu0400 -3.3 -6.0 orotate phosphoribosyltransferase compare
Atu3469 -3.2 -3.8 phosphoglyceromutase compare
Atu4542 -3.2 -12.7 beta-ketoadipate enol-lactone hydrolase conserved
Atu0040 -3.2 -1.9 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0486 -3.2 -5.7 dihydroorotate dehydrogenase compare
Atu0803 -3.1 -20.3 pyruvate,orthophosphate dikinase compare
Atu1030 -3.0 -2.0 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1308 -3.0 -9.1 aspartate carbamoyl transferase catalytic subunit compare
Atu2015 -3.0 -13.2 aminotransferase compare
Atu3755 -2.9 -6.7 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu3483 -2.7 -5.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu0399 -2.7 -8.3 dihydroorotase compare
Atu1589 -2.7 -6.7 aminotransferase, class I compare
Atu1686 -2.6 -17.0 peptidyl-prolyl cis-trans isomerse D compare
Atu3731 -2.6 -8.9 5-formyltetrahydrofolate cyclo-ligase compare
Atu1359 -2.6 -2.0 dnaK deletion suppressor protein compare
Atu2020 -2.5 -6.7 transcriptional regulator, TetR family compare
Atu2205 -2.4 -7.7 transcriptional regulator, MarR family compare
Atu2650 -2.4 -12.4 glycerol-3-phosphate dehydrogenase compare
Atu2640 -2.2 -5.4 hypothetical protein compare
Atu4773 -2.2 -3.0 two component response regulator compare
Atu0029 -2.1 -7.0 S-adenosylhomocysteine hydrolase compare
Atu1685 -2.1 -1.8 hypothetical protein compare
Atu2633 -2.0 -4.1 RhtB family transporter compare
Atu0030 -2.0 -2.5 phosphocarrier protein HPr compare
Atu4539 -1.8 -9.2 protocatechuate 3,4-dioxygenase alpha chain conserved
Atu2155 -1.8 -13.4 methionine synthase compare
Atu1456 -1.8 -8.7 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu3763 -1.8 -2.0 hypothetical protein compare
Atu2548 -1.8 -10.9 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu1457 -1.7 -3.7 hypothetical protein compare
Atu2494 -1.7 -7.3 NAD(P)+ transhydrogenase beta chain compare
Atu1454 -1.7 -7.2 siroheme synthase compare
Atu1446 -1.7 -2.3 two component response regulator compare
Atu4540 -1.7 -3.0 protocatechuate 3,4-dioxygenase subunit beta compare
Atu0047 -1.7 -11.1 malate synthase G compare
Atu0671 -1.6 -6.6 hypothetical protein compare
Atu6098 -1.6 -1.6 transcriptional regulator, HTH family compare
Atu3486 -1.6 -2.3 DeoR family transcriptional regulator compare
Atu2493 -1.4 -9.2 NAD(P)+ transhydrogenase compare
Atu4546 -1.4 -4.8 IclR family transcriptional regulator compare
Atu1464 -1.4 -7.6 glycine cleavage system T protein, aminomethyltransferase compare
Atu2821 -1.4 -4.4 transcriptional regulator, GntR family compare
Atu8115 -1.3 -4.4 Hypothetical Protein compare
Atu2745 -1.3 -10.4 acetyl-coenzyme A synthetase compare
Atu2125 -1.3 -2.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu0434 -1.3 -2.2 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu3732 -1.3 -5.5 hemolysin compare
Atu1455 -1.3 -3.8 hypothetical protein compare
Atu4530 -1.3 -5.5 TetR family transcriptional regulator compare
Atu3718 -1.3 -7.5 hypothetical protein compare
Atu1463 -1.3 -3.9 glycine cleavage system component H compare
Atu4543 -1.2 -5.0 LysR family transcriptional regulator conserved
Atu8018 -1.2 -1.4 hypothetical protein compare
Atu4792 -1.2 -2.9 hypothetical protein compare
Atu4098 -1.2 -7.8 quinolinate synthetase compare
Atu0413 -1.2 -2.1 stress induced protein compare
Atu0354 -1.2 -2.5 ferric uptake regulator compare
Atu1526 -1.2 -6.3 6-phosphogluconate dehydrogenase, decarboxylating compare
Atu0502 -1.2 -5.0 acetyl-CoA acetyltransferase compare
Atu4096 -1.1 -5.6 nicotinate-nucleotide pyrophosphorylase compare
Atu0607 -1.1 -8.5 isocitrate lyase compare
Atu0608 -1.1 -7.5 transcriptional regulator compare
Atu1748 -1.1 -5.6 NIFU-like protein compare
Atu1254 -1.1 -1.8 transcriptional regulator, ArsR family compare
Atu3730 -1.1 -1.1 hypothetical protein compare
Atu2554 -1.1 -2.4 lysyl-tRNA synthetase compare
Atu0641 -1.1 -3.8 hypothetical protein compare
Atu1810 -1.1 -1.4 hypothetical protein compare
Atu0503 -1.0 -7.3 enoyl-CoA hydratase compare
Atu0062 -1.0 -4.1 transcriptional regulator, ROK family compare
Atu2224 -1.0 -5.7 aldehyde dehydrogenase compare
Atu1462 -1.0 -6.3 glycine cleavage system protein P2 compare
Atu5451 -1.0 -1.8 hypothetical protein compare
Atu3290 -1.0 -6.0 phosphomethylpyrimidine kinase compare
Atu3014 -1.0 -0.9 hypothetical protein compare
Atu1369 -1.0 -3.5 HIT family protein compare
Atu3289 -1.0 -2.6 thiamine-phosphate pyrophosphorylase compare
Atu0361 -1.0 -2.4 transcriptional regulator compare
Atu2831 -1.0 -3.8 glucose inhibited division protein A compare
Atu6114 -1.0 -1.7 hypothetical protein compare
Atu2832 -1.0 -3.1 tRNA modification GTPase compare
Atu2555 -0.9 -3.4 L-lysine 2,3-aminomutase compare
Atu2267 -0.9 -5.1 hypothetical protein compare
Atu1779 -0.9 -2.2 hypothetical protein compare
Atu4317 -0.9 -2.6 TetR family transcriptional regulator compare
Atu4502 -0.9 -5.0 cobalamin synthesis protein compare
Atu3162 -0.9 -5.5 LacI family transcriptional regulator compare
Atu4545 -0.9 -5.0 AraC family transcriptional regulator compare
Atu3485 -0.9 -5.1 short chain dehydrogenase compare
Atu3288 -0.9 -4.0 hydroxyethylthiazole kinase compare
Atu0477 -0.9 -1.9 hypothetical protein compare
Atu1570 -0.9 -1.0 hypothetical protein compare
Atu1495 -0.9 -2.9 hypothetical protein compare
Atu2746 -0.9 -1.8 hypothetical protein compare
Atu2184 -0.9 -3.9 transcriptional regulator, AsnC family compare
Atu4685 -0.9 -5.2 LacI family transcriptional regulator compare
Atu2726 -0.9 -6.9 pyruvate carboxylase compare
Atu0626 -0.9 -5.0 alcohol dehydrogenase compare
Atu2433 -0.9 -1.1 hypothetical protein compare
Atu4161 -0.9 -2.1 hypothetical protein compare
Atu3008 -0.8 -0.7 hypothetical protein compare
Atu3337 -0.8 -5.6 LacI family transcriptional regulator compare
Atu0501 -0.8 -6.1 acyl-CoA dehydrogenase compare
Atu0981 -0.8 -5.2 glutamate-ammonia-ligase adenylyltransferase compare
Atu1258 -0.8 -4.0 ATP-dependent Clp protease, proteolytic subunit compare
Atu1028 -0.8 -2.4 hypothetical protein compare
Atu2491 -0.8 -1.3 hypothetical protein compare
Atu3627 -0.8 -1.3 hypothetical protein compare
Atu0422 -0.8 -1.6 ABC transporter, membrane spanning protein compare
Atu1683 -0.8 -1.5 hypothetical protein compare
Atu4072 -0.8 -1.4 nodulation protein N compare
Atu4501 -0.8 -4.4 hypothetical protein compare
Atu0638 -0.8 -2.0 hypothetical protein compare
Atu0319 -0.8 -1.2 ubiquinone biosynthesis protein compare
Atu4544 -0.8 -4.4 4-hydroxybenzoate 3-monooxygenase compare
Atu1774 -0.8 -4.0 ABC transporter, substrate binding protein (peptide) compare
Atu0189 -0.8 -1.8 ABC transporter, membrane spanning protein (peptide) compare
Atu2578 -0.8 -3.9 cAMP-dependent protein kinase regulatory subunit compare
Atu2569 -0.8 -5.1 thiamine biosynthesis protein compare
Atu5125 -0.8 -3.7 GntR family transcriptional regulator compare
Atu1904 -0.8 -1.5 transcriptional regulator compare
Atu0923 -0.7 -3.7 hypothetical protein compare
Atu1021 -0.7 -1.2 outer membrane protein compare
Atu2116 -0.7 -2.5 hypothetical protein compare
Atu2376 -0.7 -0.7 hypothetical protein compare
Atu4097 -0.7 -5.0 L-aspartate oxidase compare
Atu2021 -0.7 -2.8 transcriptional regulator, AraC family compare
Atu2209 -0.7 -1.9 pyrroline-5-carboxylate reductase compare
Atu0876 -0.7 -1.3 superoxide dismutase compare
Atu4514 -0.7 -2.8 RpiR family transcriptional regulator compare
Atu2225 -0.7 -4.4 transcriptional regulator compare
Atu0842 -0.7 -1.3 hypothetical protein compare
Atu1163 -0.7 -1.0 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu1902 -0.7 -3.3 transketolase compare
Atu0893 -0.7 -2.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu0011 -0.7 -2.0 transcriptional regulator compare
Atu5142 -0.7 -1.5 hypothetical protein compare
Atu4099 -0.7 -3.9 hypothetical protein compare
Atu2406 -0.7 -1.6 hypothetical protein compare
Atu4686 -0.7 -2.0 hypothetical protein compare
Atu1445 -0.7 -2.3 two component sensor kinase compare
Atu2526 -0.7 -2.7 hypothetical protein compare
Atu4053 -0.6 -1.4 succinoglycan biosynthesis protein compare
Atu1344 -0.6 -1.7 hypothetical protein compare
Atu0225 -0.6 -0.7 hypothetical protein compare
Atu0819 -0.6 -2.4 hypothetical protein compare


Specific Phenotypes

For 12 genes in this experiment

For carbon source 4-Hydroxybenzoic Acid in Agrobacterium fabrum C58

For carbon source 4-Hydroxybenzoic Acid across organisms