Experiment set10IT039 for Pseudomonas simiae WCS417

Compare to:

root sample 6; outgrowth in LB

200 most important genes:

  gene name fitness t score description  
PS417_24835 -5.3 -3.7 hypothetical protein compare
PS417_18600 -5.3 -3.0 isopropylmalate isomerase compare
PS417_19755 -5.2 -1.7 flagellar motor switch protein FliM compare
PS417_12005 -5.1 -3.2 hypothetical protein compare
PS417_01570 -5.1 -2.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_13800 -5.0 -3.2 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_16510 -4.8 -3.1 Clp protease ClpX compare
PS417_01575 -4.7 -2.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_02510 -4.6 -4.3 ATP phosphoribosyltransferase regulatory subunit compare
PS417_17405 -4.5 -2.6 AraC family transcriptional regulator compare
PS417_13820 -4.5 -5.3 UDP-glucose 6-dehydrogenase compare
PS417_19685 -4.4 -5.1 protein phosphatase compare
PS417_28220 -4.3 -2.5 LysR family transcriptional regulator compare
PS417_13795 -4.3 -5.1 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_25790 -4.2 -5.0 aminoglycoside phosphotransferase compare
PS417_21585 -4.2 -6.3 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_21595 -4.2 -2.5 flagellar biosynthesis protein FlgN compare
PS417_14915 -4.1 -2.1 host specificity protein compare
PS417_18540 -4.0 -3.6 colicin V production CvpA compare
PS417_27040 -4.0 -2.1 3-phosphoglycerate dehydrogenase compare
PS417_14655 -3.9 -1.3 lysine transporter LysE compare
PS417_04420 -3.9 -7.0 histidinol dehydrogenase compare
PS417_03935 -3.9 -2.7 N-acetyl-anhydromuranmyl-L-alanine amidase compare
PS417_04415 -3.8 -6.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_01855 -3.8 -1.9 phosphoribosyl-AMP cyclohydrolase compare
PS417_04080 -3.7 -2.6 peptide ABC transporter substrate-binding protein compare
PS417_18595 -3.7 -2.8 3-isopropylmalate dehydratase compare
PS417_00550 -3.6 -1.2 hypothetical protein compare
PS417_18390 -3.6 -4.9 LacI family transcriptional regulator compare
PS417_22775 -3.6 -6.4 histidine kinase compare
PS417_19725 -3.5 -4.2 flagellar biosynthesis protein FlhB compare
PS417_20635 -3.5 -1.2 ABC transporter ATP-binding protein compare
PS417_04270 -3.5 -7.7 ribonuclease G compare
PS417_14065 -3.5 -3.1 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_19695 -3.5 -5.4 flagellar biosynthesis sigma factor compare
PS417_24800 -3.4 -3.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_27300 -3.4 -1.1 cell division protein ZapA compare
PS417_26805 -3.4 -1.1 cell division protein FtsE compare
PS417_19785 -3.4 -1.8 flagellar biogenesis protein compare
PS417_18560 -3.4 -7.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_22130 -3.4 -5.6 glucose/xylose ABC transporter, ATPase component (from data) compare
PS417_01565 -3.4 -3.7 imidazole glycerol phosphate synthase compare
PS417_08230 -3.3 -1.9 lipopolysaccharide biosynthesis protein RfbH compare
PS417_26240 -3.3 -2.0 N-methylproline demethylase compare
PS417_15495 -3.2 -3.1 FAD-dependent oxidoreductase compare
PS417_20100 -3.2 -9.1 hypothetical protein compare
PS417_09235 -3.2 -1.1 molecular chaperone compare
PS417_19335 -3.2 -2.5 isochorismatase compare
PS417_19835 -3.2 -1.5 flagellar biosynthesis protein FliS compare
PS417_19860 -3.2 -11.1 flagellar hook protein FlgL compare
PS417_26230 -3.2 -3.1 electron transfer flavoprotein subunit alpha compare
PS417_22375 -3.1 -1.0 cold-shock protein compare
PS417_23545 -3.1 -1.9 gamma-glutamyl kinase compare
PS417_02975 -3.1 -3.8 3-dehydroquinate dehydratase compare
PS417_16990 -3.1 -5.2 acyl-CoA dehydrogenase compare
PS417_04380 -3.1 -1.8 ABC transporter permease compare
PS417_12355 -3.1 -1.9 magnesium chelatase compare
PS417_23800 -3.0 -7.4 ketol-acid reductoisomerase compare
PS417_21565 -3.0 -2.9 flagellar basal body rod protein FlgC compare
PS417_12805 -3.0 -8.9 glycogen branching protein compare
PS417_19865 -3.0 -8.7 flagellar hook protein FlgK compare
PS417_19690 -3.0 -3.9 histidine kinase compare
PS417_19850 -3.0 -5.8 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_23375 -3.0 -1.3 cytochrome C oxidase compare
PS417_22570 -2.9 -1.0 H-NS histone compare
PS417_23805 -2.9 -3.2 acetolactate synthase 3 regulatory subunit compare
PS417_16520 -2.9 -2.3 cold-shock protein compare
PS417_04390 -2.9 -4.7 toluene tolerance protein compare
PS417_22680 -2.9 -2.1 chemotaxis protein CheY compare
PS417_13805 -2.9 -6.6 4-amino-4-deoxy-L-arabinose transferase compare
PS417_09085 -2.9 -1.3 hypothetical protein compare
PS417_23995 -2.8 -0.9 preprotein translocase subunit SecG compare
PS417_27535 -2.8 -5.5 chemotaxis protein CheY compare
PS417_16005 -2.8 -2.7 ATPase compare
PS417_18530 -2.8 -4.2 O-succinylhomoserine sulfhydrylase compare
PS417_25725 -2.8 -10.9 anthranilate synthase component I compare
PS417_26740 -2.8 -6.2 homoserine acetyltransferase compare
PS417_24655 -2.8 -4.1 hypothetical protein compare
PS417_19885 -2.7 -1.6 flagellar basal body rod protein FlgG compare
PS417_10245 -2.7 -1.5 hypothetical protein compare
PS417_19765 -2.7 -4.7 flagellar hook-length control protein compare
PS417_21570 -2.7 -2.6 flagellar basal body rod protein FlgB compare
PS417_02005 -2.7 -6.6 glutamate synthase compare
PS417_26890 -2.7 -4.1 dihydroxy-acid dehydratase compare
PS417_03310 -2.6 -2.6 carbonate dehydratase compare
PS417_08580 -2.6 -4.0 histidine kinase compare
PS417_19825 -2.6 -8.6 ATPase AAA compare
PS417_01620 -2.6 -2.5 preprotein translocase subunit SecB compare
PS417_27245 -2.6 -1.8 aminotransferase DegT compare
PS417_03560 -2.6 -1.7 GTP-binding protein compare
PS417_14125 -2.6 -2.9 molybdenum ABC transporter ATP-binding protein compare
PS417_23810 -2.6 -7.2 acetolactate synthase 3 catalytic subunit compare
PS417_20650 -2.6 -6.2 hypothetical protein compare
PS417_06375 -2.5 -0.8 deoxycytidine triphosphate deaminase compare
PS417_22990 -2.5 -1.4 iron dicitrate transport regulator FecR compare
PS417_26235 -2.5 -3.8 (Fe-S)-binding protein compare
PS417_08170 -2.5 -8.2 capsular biosynthesis protein compare
PS417_06530 -2.5 -2.2 membrane protein compare
PS417_25710 -2.5 -1.1 indole-3-glycerol-phosphate synthase compare
PS417_00185 -2.5 -2.9 tryptophan synthase subunit beta compare
PS417_22780 -2.4 -2.1 XRE family transcriptional regulator compare
PS417_04220 -2.4 -1.1 4-carboxymuconolactone decarboxylase compare
PS417_22135 -2.4 -7.4 glucose/xylose ABC transporter, permease component 1 (from data) compare
PS417_01955 -2.4 -5.9 peptidase compare
PS417_18585 -2.4 -3.8 3-isopropylmalate dehydrogenase compare
PS417_19840 -2.4 -7.7 flagellar cap protein FliD compare
PS417_09210 -2.4 -1.4 TetR family transcriptional regulator compare
PS417_03045 -2.4 -1.5 hypothetical protein compare
PS417_25715 -2.4 -3.2 anthranilate phosphoribosyltransferase compare
PS417_02415 -2.3 -3.7 phosphoserine phosphatase compare
PS417_04585 -2.3 -1.2 hypothetical protein compare
PS417_04385 -2.3 -2.8 organic solvent ABC transporter substrate-binding protein compare
PS417_16475 -2.3 -2.9 camphor resistance protein CrcB compare
PS417_07620 -2.3 -1.4 beta-hexosaminidase compare
PS417_12855 -2.3 -2.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_21480 -2.3 -1.2 23S rRNA pseudouridylate synthase compare
PS417_26995 -2.3 -6.3 phosphoserine phosphatase compare
PS417_11485 -2.3 -1.8 AraC family transcriptional regulator compare
PS417_02000 -2.3 -7.4 glutamate synthase compare
PS417_22850 -2.3 -7.1 virulence factor family protein compare
PS417_27795 -2.3 -0.7 orotate phosphoribosyltransferase compare
PS417_04060 -2.3 -2.3 dipeptide ABC transporter, permease component (from data) compare
PS417_15915 -2.3 -1.0 hypothetical protein compare
PS417_19710 -2.3 -6.8 flagellar biosynthesis protein FlhA compare
PS417_01580 -2.3 -1.0 imidazole glycerol phosphate synthase compare
PS417_24745 -2.3 -1.4 gamma-glutamyl phosphate reductase compare
PS417_26990 -2.3 -1.0 RNA pyrophosphohydrolase compare
PS417_19740 -2.2 -4.5 flagellar biosynthesis protein flip compare
PS417_22140 -2.2 -6.1 glucose/xylose ABC transporter, permease component 2 (from data) compare
PS417_04340 -2.2 -5.0 ribosome hibernation promoting factor HPF compare
PS417_22685 -2.2 -8.5 Glucokinase (EC 2.7.1.2) (from data) compare
PS417_21000 -2.2 -1.4 CrfX protein compare
PS417_21555 -2.2 -4.6 flagellar hook protein FlgE compare
PS417_13790 -2.2 -2.2 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_04595 -2.2 -1.9 cell division protein MraZ compare
PS417_06095 -2.2 -1.3 energy transducer TonB compare
PS417_18435 -2.2 -1.1 hypothetical protein compare
PS417_05815 -2.1 -2.9 recombinase RecA compare
PS417_20130 -2.1 -6.5 dehydrogenase compare
PS417_26370 -2.1 -3.1 RNA helicase compare
PS417_01710 -2.1 -3.1 histidine utilization repressor compare
PS417_19655 -2.1 -4.4 chemotaxis protein CheW compare
PS417_08125 -2.1 -0.7 prephenate dehydratase compare
PS417_15125 -2.1 -1.3 glutathione S-transferase compare
PS417_26645 -2.1 -2.2 chemotaxis protein compare
PS417_22145 -2.1 -6.2 glucose/xylose ABC transporter, periplasmic substrate-binding component (from data) compare
PS417_10985 -2.1 -1.0 NADH:flavin oxidoreductase compare
PS417_02160 -2.1 -1.0 hypothetical protein compare
PS417_17780 -2.1 -0.9 Ais protein compare
PS417_23370 -2.1 -3.1 protoheme IX farnesyltransferase compare
PS417_09440 -2.1 -1.7 MerR family transcriptional regulator compare
PS417_25720 -2.0 -3.2 anthranilate synthase component II compare
PS417_01795 -2.0 -7.0 glucosyltransferase MdoH compare
PS417_27705 -2.0 -1.2 amino acid dehydrogenase compare
PS417_22125 -2.0 -9.1 porin compare
PS417_24710 -2.0 -2.9 lipoprotein compare
PS417_28450 -2.0 -1.6 XRE family transcriptional regulator compare
PS417_27445 -2.0 -4.7 membrane protein compare
PS417_19880 -2.0 -3.1 flagellar basal body L-ring protein compare
PS417_13510 -2.0 -0.9 polyketide cyclase compare
PS417_13690 -2.0 -5.7 chemotaxis protein compare
PS417_21430 -2.0 -2.2 3-oxoacyl-ACP synthase compare
PS417_20985 -2.0 -1.4 porin compare
PS417_23110 -1.9 -5.3 2-isopropylmalate synthase compare
PS417_22690 -1.9 -2.1 phosphogluconate dehydratase compare
PS417_27940 -1.9 -1.0 type VI secretion protein compare
PS417_22520 -1.9 -1.2 histidine kinase compare
PS417_12280 -1.9 -1.6 MerR family transcriptional regulator compare
PS417_15380 -1.9 -3.2 hypothetical protein compare
PS417_16515 -1.9 -1.5 Clp protease ClpS compare
PS417_12120 -1.9 -5.1 IclR family transcriptional regulator compare
PS417_27690 -1.9 -2.3 XRE family transcriptional regulator compare
PS417_19795 -1.9 -2.7 flagellar assembly protein FliH compare
PS417_26225 -1.9 -2.9 electron transfer flavoprotein subunit beta compare
PS417_08245 -1.9 -0.9 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_21515 -1.9 -9.1 transcriptional regulator compare
PS417_12660 -1.9 -1.5 hypothetical protein compare
PS417_04410 -1.8 -1.4 hypothetical protein compare
PS417_25650 -1.8 -3.4 anhydro-N-acetylmuramic acid kinase compare
PS417_27195 -1.8 -0.8 N-acetylglutamate synthase compare
PS417_17565 -1.8 -1.7 branched-chain amino acid aminotransferase compare
PS417_01300 -1.8 -2.6 thioesterase compare
PS417_17795 -1.8 -1.3 ABC transporter permease compare
PS417_20725 -1.8 -1.1 cbb3-type cytochrome c oxidase subunit II compare
PS417_26215 -1.8 -3.0 ferredoxin compare
PS417_08200 -1.8 -2.1 hypothetical protein compare
PS417_04275 -1.8 -8.2 hypothetical protein compare
PS417_02805 -1.8 -0.9 urease subunit gamma compare
PS417_02890 -1.8 -3.2 cobalt-precorrin-6X reductase compare
PS417_00590 -1.8 -1.0 5S ribosomal RNA compare
PS417_17645 -1.8 -1.3 RND transporter compare
PS417_26745 -1.8 -3.6 methionine biosynthesis protein MetW compare
PS417_10675 -1.8 -0.8 TetR family transcriptional regulator compare
PS417_19730 -1.8 -1.7 flagellar biosynthesis protein FliR compare
PS417_13010 -1.7 -1.5 alpha/beta hydrolase compare
PS417_00385 -1.7 -0.8 Fur family transcriptional regulator compare
PS417_26420 -1.7 -1.1 hypothetical protein compare
PS417_08155 -1.7 -1.4 integration host factor subunit beta compare
PS417_24135 -1.7 -1.3 hypothetical protein compare
PS417_26175 -1.7 -0.8 sarcosine oxidase subunit gamma compare


Specific Phenotypes

For 35 genes in this experiment