Experiment set10IT039 for Pseudomonas putida KT2440

Compare to:

3-hydroxypentanoate

200 most important genes:

  gene name fitness t score description  
PP_2335 -6.3 -10.5 methylcitrate synthase compare
PP_5155 -5.9 -8.1 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0082 -5.7 -6.7 tryptophan synthase alpha chain compare
PP_3511 -5.6 -8.9 Branched-chain-amino-acid aminotransferase compare
PP_0083 -5.5 -7.6 tryptophan synthase beta chain compare
PP_1986 -5.5 -5.3 3-isopropylmalate dehydratase small subunit compare
PP_4680 -5.4 -17.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0292 -5.3 -5.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0422 -5.3 -8.6 Indole-3-glycerol phosphate synthase compare
PP_4679 -5.3 -8.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4678 -5.3 -18.8 Ketol-acid reductoisomerase compare
PP_0691 -5.2 -3.6 Glutamate 5-kinase compare
PP_0966 -5.2 -15.3 Histidinol dehydrogenase compare
PP_1988 -5.2 -12.2 3-isopropylmalate dehydrogenase compare
PP_5014 -5.1 -5.0 Phosphoribosyl-AMP cyclohydrolase compare
PP_1079 -5.1 -9.2 Ornithine carbamoyltransferase compare
PP_0293 -5.0 -3.4 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4890 -5.0 -8.4 ATP phosphoribosyltransferase regulatory subunit compare
PP_5185 -4.9 -8.7 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0787 -4.8 -3.7 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4723 -4.8 -18.2 Carbamoyl-phosphate synthase large chain compare
PP_5347 -4.7 -16.7 pyruvate carboxylase subunit A compare
PP_1088 -4.7 -11.4 Argininosuccinate synthase compare
PP_0967 -4.6 -12.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5289 -4.6 -5.4 Acetylglutamate kinase compare
PP_0290 -4.5 -10.0 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1985 -4.5 -6.5 3-isopropylmalate dehydratase large subunit compare
PP_2334 -4.4 -9.6 2-methylisocitrate lyase compare
PP_5095 -4.4 -3.0 pyrroline-5-carboxylate reductase compare
PP_1231 -4.4 -8.8 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4909 -4.4 -9.2 phosphoserine phosphatase compare
PP_4724 -4.4 -9.2 Carbamoyl-phosphate synthase small chain compare
PP_0965 -4.3 -9.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5346 -4.3 -12.3 pyruvate carboxylase subunit B compare
PP_1025 -4.3 -12.0 2-isopropylmalate synthase compare
PP_5097 -4.2 -15.9 homoserine O-acetyltransferase compare
PP_5128 -4.1 -9.4 Dihydroxy-acid dehydratase compare
PP_1995 -4.1 -12.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0417 -4.0 -18.5 Anthranilate synthase component 1 compare
PP_2337 -4.0 -2.7 aconitate isomerase compare
PP_5098 -4.0 -8.7 methionine biosynthesis protein MetW compare
PP_0421 -3.9 -8.2 Anthranilate phosphoribosyltransferase compare
PP_5015 -3.9 -6.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_3122 -3.9 -6.3 acetoacetyl CoA-transferase (subunit A) compare
PP_0289 -3.8 -7.9 Imidazoleglycerol-phosphate dehydratase compare
PP_1654 -3.8 -3.6 cysteine synthase B compare
PP_2327 -3.7 -9.6 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0420 -3.7 -16.1 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0184 -3.7 -7.4 Argininosuccinate lyase compare
PP_3123 -3.7 -10.0 acetoacetyl CoA-transferase (subunit B) compare
PP_5322 -3.7 -10.5 putative metal ion transporter compare
PP_5348 -3.6 -11.2 Transcriptional regulator, LysR family compare
PP_2001 -3.5 -7.7 O-succinylhomoserine sulfhydrylase compare
PP_3999 -3.5 -11.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2336 -3.5 -2.4 aconitate hydratase 1 compare
PP_2371 -3.5 -10.1 Sulphite reductase hemoprotein, beta subunit compare
PP_4999 -3.5 -3.8 dihydroorotase-like protein compare
PP_4696 -3.4 -6.8 Nitrogen regulation protein NR(I) compare
PP_2168 -3.1 -12.5 Transaldolase compare
PP_4699 -3.0 -6.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4799 -2.9 -4.7 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4058 -2.8 -13.0 1,4-alpha-glucan branching enzyme compare
PP_4993 -2.7 -5.1 Glutathione synthetase compare
PP_4874 -2.7 -1.8 50S ribosomal protein L9 compare
PP_1826 -2.7 -3.9 Hydrolase, isochorismatase family compare
PP_3121 -2.6 -7.1 transcriptional regulator, LysR family compare
PP_1616 -2.6 -10.9 formaldehyde dehydrogenase, glutathione-dependent compare
PP_4700 -2.3 -2.7 pantothenate synthetase compare
PP_4964 -2.3 -4.3 D-erythrose 4-phosphate dehydrogenase compare
PP_0356 -2.3 -9.5 malate synthase G compare
PP_0339 -2.2 -4.5 Pyruvate dehydrogenase E1 component compare
PP_2433 -2.1 -3.1 conserved protein of unknown function compare
PP_0164 -2.1 -8.8 conserved protein of unknown function compare
PP_4122 -2.1 -2.7 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1110 -1.9 -3.4 serine acetyltransferase compare
PP_2370 -1.8 -3.2 conserved protein of unknown function compare
PP_1617 -1.8 -8.7 S-formylglutathione hydrolase / S-lactoylglutathione hydrolase compare
PP_1111 -1.8 -5.3 putative Synthetase compare
PP_5486 -1.8 -4.1 conserved protein of unknown function compare
PP_1109 -1.8 -10.9 Transcriptional regulator, GntR family compare
PP_0381 -1.7 -8.2 Coenzyme PQQ synthesis protein F compare
PP_2903 -1.7 -4.0 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_4129 -1.6 -3.9 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4120 -1.6 -4.2 NADH-quinone oxidoreductase subunit B compare
PP_0735 -1.6 -3.7 molybdopterin-synthase adenylyltransferase compare
PP_4131 -1.6 -6.3 NADH-quinone oxidoreductase subunit N compare
PP_5145 -1.5 -12.7 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_1615 -1.5 -6.9 Transcriptional regulator, LysR family compare
PP_2328 -1.5 -5.6 Phosphoadenosine phosphosulfate reductase compare
PP_2672 -1.5 -5.9 Transcriptional activator protein ExaE compare
PP_1428 -1.5 -2.8 Sigma factor AlgU negative regulatory protein compare
PP_2675 -1.5 -4.1 Cytochrome c-type protein compare
PP_3946 -1.5 -2.4 HTH-type transcriptional repressor NicR compare
PP_0362 -1.4 -10.6 Biotin synthase compare
PP_4126 -1.4 -2.4 NADH-quinone oxidoreductase subunit I compare
PP_2674 -1.4 -7.4 quinoprotein ethanol dehydrogenase compare
PP_2375 -1.4 -9.3 cobalamin-dependent methionine synthase compare
PP_0393 -1.3 -2.1 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4480 -1.3 -7.8 arginine N-succinyltransferase, subunit alpha compare
PP_4895 -1.3 -3.2 tRNA dimethylallyltransferase compare
PP_2682 -1.2 -5.5 Fe-containing alcohol dehydrogenase compare
PP_3102 -1.2 -4.2 conserved protein of unknown function compare
PP_1994 -1.2 -2.4 tRNA pseudouridine (38-40)synthase compare
PP_5313 -1.2 -3.3 DNA-binding protein HU-alpha compare
PP_4693 -1.1 -3.5 RNA polymerase-binding transcription factor DksA compare
PP_4627 -1.1 -2.2 transcriptional regulator, LysR family compare
PP_4977 -1.1 -6.4 5,10-methylenetetrahydrofolate reductase compare
PP_4828 -1.1 -1.6 Precorrin-8X methylmutase compare
PP_0117 -1.1 -4.1 Zn(2+) ABC transporter - permease subunit compare
PP_2880 -1.1 -2.6 Transcriptional regulator, TetR family compare
PP_4130 -1.1 -2.7 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_0801 -1.1 -1.9 conserved exported protein of unknown function compare
PP_5248 -1.1 -2.3 putative hydrolase compare
PP_3649 -1.0 -3.4 Transcriptional regulator, GntR family compare
PP_2868 -1.0 -4.7 Transcriptional regulator, Cro/CI family compare
PP_4004 -1.0 -2.4 DNA translocase FtsK compare
PP_0428 -1.0 -6.7 aminoacyl-adenylate hydrolase/purine nucleoside phosphoramidase compare
PP_0368 -1.0 -6.6 putative Acyl-CoA dehydrogenase compare
PP_0948 -1.0 -2.4 Phosphocarrier protein HPr compare
PP_0120 -1.0 -5.2 putative zinc ABC transporter compare
PP_2665 -1.0 -4.9 Glycerol metabolism activator compare
PP_4966 -1.0 -2.5 transcriptional regulator of methionine metabolism compare
PP_0122 -1.0 -2.2 conserved exported protein of unknown function compare
PP_2306 -1.0 -2.5 conserved exported protein of unknown function compare
PP_0291 -0.9 -1.6 conserved protein of unknown function compare
PP_5203 -0.9 -5.0 5-formyltetrahydrofolate cyclo-ligase compare
PP_0377 -0.9 -2.4 coenzyme PQQ synthesis protein D compare
PP_4116 -0.9 -6.1 isocitrate lyase compare
PP_3731 -0.9 -5.3 Transcriptional regulator, TetR family compare
PP_4793 -0.9 -2.1 conserved protein of unknown function compare
PP_0376 -0.9 -6.1 Coenzyme PQQ synthesis protein E compare
PP_3245 -0.9 -1.7 conserved protein of unknown function compare
PP_4470 -0.9 -2.6 putative transcriptional regulator (Arc domain-containing) compare
PP_0834 -0.9 -1.8 Sec translocation complex subunit YajC compare
PP_1328 -0.9 -2.0 Protein MraZ compare
PP_4695 -0.9 -4.3 Sensory box histidine kinase compare
PP_2302 -0.9 -3.9 DNA-binding, ATP-dependent protease compare
PP_1303 -0.9 -4.0 Sulfate adenylyltransferase subunit 2 compare
PP_5090 -0.9 -1.7 putative cell division protein compare
PP_0127 -0.9 -3.7 Thiol:disulfide interchange protein compare
PP_2333 -0.9 -2.0 GntR family transcriptional regulator compare
PP_3073 -0.9 -4.0 3-hydroxybutyrate dehydrogenase compare
PP_0378 -0.8 -5.6 Pyrroloquinoline-quinone synthase compare
PP_5104 -0.8 -4.7 thiazole synthase compare
PP_1304 -0.8 -5.6 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_3519 -0.8 -1.3 putative Lipoprotein compare
PP_2671 -0.8 -5.0 Sensor histidine kinase compare
PP_4832 -0.8 -2.9 Precorrin-6x reductase compare
PP_0767 -0.8 -5.5 Transcriptional regulator, LuxR family compare
PP_5227 -0.8 -3.9 diaminopimelate decarboxylase compare
PP_1941 -0.8 -3.5 conserved protein of unknown function compare
PP_1673 -0.8 -4.3 cobyrinate a,c-diamide synthase compare
PP_4880 -0.8 -4.2 exoribonuclease R compare
PP_0916 -0.8 -2.2 Amino acid transporter LysE compare
PP_5161 -0.8 -3.8 putative lysophospholipase compare
PP_1912 -0.8 -3.3 Phosphate acyltransferase compare
PP_1678 -0.8 -2.1 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_3506 -0.8 -3.7 Magnesium chelatase, subunit ChII compare
PP_4124 -0.8 -3.1 NADH-quinone oxidoreductase subunit G compare
PP_2683 -0.7 -3.2 putative sensory box histidine kinase/response regulator compare
PP_5658 -0.7 -2.5 protein of unknown function compare
PP_1233 -0.7 -3.0 sulfurtransferase compare
PP_1292 -0.7 -4.5 Cyclic pyranopterin monophosphate synthase accessory protein compare
PP_3930 -0.7 -2.6 conserved exported protein of unknown function compare
PP_2510 -0.7 -1.3 conserved protein of unknown function compare
PP_2307 -0.7 -1.7 conserved protein of unknown function compare
PP_4726 -0.7 -1.8 Chaperone protein DnaJ compare
PP_0414 -0.7 -3.1 Polyamine ABC transporter, permease protein compare
PP_0118 -0.7 -3.9 zinc import ATP-binding protein compare
PP_4532 -0.7 -1.4 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_5327 -0.7 -3.3 putative phosphate ABC transporter, permease subunit compare
PP_0763 -0.7 -4.7 Medium-chain-fatty-acid CoA ligase compare
PP_3105 -0.7 -2.2 conserved membrane protein of unknown function compare
PP_4782 -0.7 -3.5 Phosphomethylpyrimidine kinase compare
PP_4722 -0.7 -2.7 Transcription elongation factor GreA compare
PP_0809 -0.7 -4.7 disulfide bond formation protein B compare
PP_0195 -0.7 -1.5 conserved protein of unknown function compare
PP_0379 -0.7 -3.5 Coenzyme PQQ synthesis protein B compare
PP_1097 -0.7 -1.4 Methionine--tRNA ligase compare
PP_1898 -0.7 -2.1 MotA/TolQ/ExbB proton channel family protein compare
PP_1672 -0.7 -2.6 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_3590 -0.7 -3.8 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_2181 -0.7 -3.0 Transcriptional regulator, Cro/CI family compare
PP_0516 -0.7 -3.4 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II compare
PP_5748 -0.7 -1.0 cytochrome c heme lyase subunit compare
PP_4267 -0.7 -3.0 Recombination protein RecR compare
PP_0002 -0.7 -3.3 probable chromosome partition protein compare
PP_0003 -0.7 -2.1 16S RNA methyltransferase compare
PP_5303 -0.7 -2.2 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1493 -0.7 -2.4 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1426 -0.7 -5.2 L-aspartate oxidase compare
PP_3603 -0.7 -3.4 Transcriptional regulator, GntR family compare
PP_3507 -0.7 -5.0 Aerobic cobaltochelatase subunit CobN compare
PP_4515 -0.6 -2.5 Transcriptional regulator, MarR family compare
PP_5448 -0.6 -2.9 conserved protein of unknown function compare
PP_4829 -0.6 -1.6 putative precorrin-3B synthase compare
PP_0218 -0.6 -4.3 Sensory box protein compare
PP_5217 -0.6 -5.3 Polyphosphate kinase compare
PP_0274 -0.6 -1.4 putative transcriptional regulator containing HTH domain compare
PP_t10 -0.6 -1.1 tRNA-Pro compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source rac-3-Hydroxypentanoic Acid in Pseudomonas putida KT2440

For carbon source rac-3-Hydroxypentanoic Acid across organisms