Experiment set10IT039 for Pseudomonas putida KT2440

Compare to:

3-hydroxypentanoate

200 most detrimental genes:

  gene name fitness t score description  
PP_0938 +1.9 14.0 conserved protein of unknown function compare
PP_0856 +1.4 5.2 conserved lipoprotein of unknown function compare
PP_1650 +1.3 12.2 Sensor protein GacS compare
PP_4099 +1.2 10.9 two-componenent system BarA/UvrY - regulatory subunit compare
PP_4373 +1.2 10.0 Transcriptional regulator FleQ compare
PP_2403 +1.1 2.4 Chemotaxis protein CheY compare
PP_5017 +1.1 2.2 Sec-independent protein translocase protein TatB compare
PP_4561 +1.0 1.7 stress response protein compare
PP_0178 +1.0 8.2 putative efflux pump compare
PP_0547 +1.0 5.2 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_4785 +0.9 4.9 conserved exported protein of unknown function compare
PP_5471 +0.9 1.3 putative response regulator receiver protein compare
PP_0179 +0.9 6.9 putative efflux transporter compare
PP_0176 +0.9 7.0 putative efflux transporter compare
PP_1623 +0.8 6.1 RNA polymerase, sigma S (sigma 38) factor compare
PP_0177 +0.8 5.0 conserved protein of unknown function compare
PP_0168 +0.8 7.5 putative surface adhesion protein compare
PP_1779 +0.8 4.5 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1999 +0.8 2.6 membrane protein required for colicin V production compare
PP_2378 +0.7 1.8 Fe/S biogenesis protein NfuA compare
PP_0957 +0.7 1.9 D-arabinose 5-phosphate isomerase compare
PP_5453 +0.7 1.5 conserved protein of unknown function compare
PP_0401 +0.7 1.4 Ribosomal RNA small subunit methyltransferase A compare
PP_2747 +0.7 1.7 conserved protein of unknown function compare
PP_0959 +0.7 2.2 phospholipid ABC transporter compare
PP_3098 +0.7 1.3 conserved protein of unknown function compare
PP_2720 +0.7 1.2 conserved protein of unknown function compare
PP_5594 +0.7 1.6 conserved protein of unknown function compare
PP_1364 +0.7 5.3 conserved exported protein of unknown function compare
PP_0725 +0.7 3.1 conserved hypothetical TPR repeat protein compare
PP_3824 +0.7 2.0 conserved exported protein of unknown function compare
PP_0166 +0.7 5.7 HlyD family secretion protein compare
PP_1138 +0.7 2.8 branched chain amino acid transporter - ATP binding subunit compare
PP_0167 +0.6 5.9 Toxin secretion ATP-binding protein compare
PP_0536 +0.6 3.7 conserved protein of unknown function compare
PP_4952 +0.6 1.7 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_4519 +0.6 5.3 Agglutination protein compare
PP_4098 +0.6 1.6 UvrABC system protein C compare
PP_1663 +0.6 3.6 conserved exported protein of unknown function compare
PP_5491 +0.6 1.6 conserved protein of unknown function with SEC-C motif domain compare
PP_5058 +0.6 3.7 Carboxy-terminal-processing protease compare
PP_2322 +0.6 4.6 Major outer membrane lipoprotein compare
PP_1562 +0.6 1.8 putative Phage terminase, small subunit compare
PP_0852 +0.6 2.7 Transcriptional regulator, Cro/CI family compare
PP_3821 +0.6 4.4 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4642 +0.6 1.2 Cyclic diguanosine monophosphate-binding protein compare
PP_2291 +0.6 1.8 conserved protein of unknown function compare
PP_1310 +0.6 1.9 conserved hypothetical protein compare
PP_1632 +0.6 1.8 conserved protein of unknown function compare
PP_4171 +0.6 5.1 conserved exported protein of unknown function compare
PP_0165 +0.6 5.0 GGDEF domain protein compare
PP_0440 +0.6 1.9 Elongation factor Tu-A compare
PP_5309 +0.6 1.8 oxidative and nitrosative stress transcriptional dual regulator compare
PP_4792 +0.6 1.2 conserved exported protein of unknown function compare
PP_1008 +0.6 2.1 RNA polymerase subunit sigma-24 compare
PP_2320 +0.6 4.4 conserved exported protein of unknown function compare
PP_1140 +0.6 4.0 branched chain amino acid transporter - permease subunit compare
PP_2054 +0.5 2.5 putative DNA-binding transcriptional regulator compare
PP_1224 +0.5 2.3 periplasmic subunit of the TolQRA transport system compare
PP_5225 +0.5 1.4 frataxin compare
PP_2889 +0.5 2.8 putative Transmembrane regulator PrtR compare
PP_0035 +0.5 1.4 putative bactoprenol-linked glycose transferase compare
PP_1041 +0.5 1.5 twin arginine protein export complex subunit compare
PP_1649 +0.5 1.4 D-lactate dehydrogenase compare
PP_2152 +0.5 2.2 glycerophosphoryl diester phosphodiesterase compare
PP_3971 +0.5 1.5 conserved protein of unknown function compare
PP_1004 +0.5 1.9 conserved protein of unknown function compare
PP_2319 +0.5 2.3 conserved protein of unknown function compare
PP_1128 +0.5 1.5 OmpA family protein compare
PP_5027 +0.5 1.9 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_4008 +0.5 3.1 ATP-dependent serine protease compare
PP_5552 +0.5 1.2 conserved protein of unknown function compare
PP_3020 +0.5 2.4 putative Serine/threonine protein phosphatase compare
PP_1137 +0.5 3.3 high-affinity branched-chain amino acid transporter, ATP binding compare
PP_2323 +0.5 3.6 conserved protein of unknown function compare
PP_1048 +0.5 1.3 putative protein secretion protein for export compare
PP_4223 +0.5 1.9 diaminobutyrate-2-oxoglutarate transaminase compare
PP_2331 +0.5 3.2 conserved membrane protein of unknown function compare
PP_5609 +0.5 2.4 conserved protein of unknown function compare
PP_1568 +0.5 1.1 conserved protein of unknown function compare
PP_2147 +0.5 2.4 conserved exported protein of unknown function compare
PP_5267 +0.5 1.3 putative cytochrome c5 compare
PP_5571 +0.5 1.0 conserved protein of unknown function compare
PP_1829 +0.5 2.1 Hydrolase, alpha/beta fold family compare
PP_3365 +0.5 1.2 Acetolactate synthase compare
PP_4957 +0.5 2.3 conserved protein of unknown function compare
PP_0125 +0.5 2.4 putative cytochrome c-type protein compare
PP_2313 +0.5 1.4 conserved membrane protein of unknown function compare
PP_2750 +0.5 2.5 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_1664 +0.5 2.3 phosphoribosylglycinamide formyltransferase 1 compare
PP_0283 +0.5 1.7 Arginine/ornithine transport ATP-binding protein AotP compare
PP_3532 +0.5 1.5 Transcriptional regulator, AsnC family compare
PP_0880 +0.5 2.2 dipeptide ABC transporter - putative membrane subunit compare
PP_4314 +0.5 3.0 conserved protein of unknown function compare
PP_5633 +0.5 1.6 conserved protein of unknown function compare
PP_1903 +0.5 2.1 putative phosphotyrosine-protein phosphatase compare
PP_3757 +0.5 1.9 Chemotaxis protein CheY compare
PP_3798 +0.5 2.5 conserved protein of unknown function compare
PP_1834 +0.5 2.4 conserved protein of unknown function compare
PP_2740 +0.5 1.2 Transcriptional regulator, MerR family compare
PP_0138 +0.4 3.0 conserved membrane protein of unknown function compare
PP_3892 +0.4 0.9 conserved protein of unknown function compare
PP_5176 +0.4 2.0 conserved protein of unknown function compare
PP_3647 +0.4 1.7 putative Oxidoreductase compare
PP_3239 +0.4 1.8 putative cointegrate resolution protein T Tn4652 compare
PP_4050 +0.4 3.9 glycogen synthase compare
PP_2878 +0.4 1.3 conserved protein of unknown function compare
PP_2145 +0.4 2.4 beta-N-acetylglucosaminidase compare
PP_5114 +0.4 0.9 putative adenine methyltransferase compare
PP_1122 +0.4 1.0 OmpA family protein compare
PP_0509 +0.4 1.8 conserved protein of unknown function compare
PP_0719 +0.4 0.6 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_2581 +0.4 1.0 conserved protein of unknown function compare
PP_4317 +0.4 1.2 conserved protein of unknown function compare
PP_0713 +0.4 3.0 Kef-type potassium/proton antiporter, CPA2 family compare
PP_5604 +0.4 1.0 putative subtilisin-like serine protease compare
PP_2828 +0.4 1.8 conserved protein of unknown function compare
PP_4541 +0.4 2.2 peptidyl-prolyl cis-trans isomerase A (rotamase A) compare
PP_2593 +0.4 1.9 Ferric siderophore ABC transporter, permease protein compare
PP_0846 +0.4 0.7 DnaK-like molecular chaperone specific for IscU compare
PP_4482 +0.4 1.6 Transcriptional regulator, AraC family compare
PP_2777 +0.4 1.8 putative Acyl carrier protein compare
PP_2800 +0.4 1.4 putative Diaminobutyrate-2-oxoglutarate transaminase compare
PP_2700 +0.4 1.1 AhpC/TSA family protein compare
PP_4034 +0.4 2.3 N-carbamoyl-beta-alanine amidohydrolase/allantoine amidohydrolase 2 compare
PP_0592 +0.4 2.4 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_3924 +0.4 1.2 conserved protein of unknown function compare
PP_1190 +0.4 1.8 conserved protein of unknown function compare
PP_1113 +0.4 2.5 Pyridoxal-phosphate dependent enzyme family protein compare
PP_3756 +0.4 1.9 TetR family transcriptional regulator compare
PP_5422 +0.4 0.9 hypothetical protein compare
PP_4054 +0.4 1.4 conserved protein of unknown function compare
PP_5561 +0.4 2.3 conserved protein of unknown function compare
PP_0886 +0.4 2.2 conserved exported protein of unknown function compare
PP_2995 +0.4 2.7 putative DNA topology modulation kinase FlaR compare
PP_3556 +0.4 2.8 conserved membrane protein of unknown function compare
PP_3086 +0.4 3.1 putative RNA polymerase sigma-70 factor compare
PP_3637 +0.4 0.9 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_4997 +0.4 1.0 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_2848 +0.4 1.3 urease accessory protein compare
PP_0001 +0.4 0.8 probable chromosome-partitioning protein compare
PP_5247 +0.4 1.7 conserved protein of unknown function compare
PP_3398 +0.4 1.3 putative Curli fiber surface-exposed nucleator CsgB compare
PP_3935 +0.4 2.0 conserved protein of unknown function compare
PP_2189 +0.4 1.2 conserved protein of unknown function compare
PP_4159 +0.4 1.3 Potassium-transporting ATPase C chain compare
PP_1567 +0.4 2.6 Capsid protein compare
PP_1550 +0.4 1.1 Transcriptional regulator, Cro/CI family compare
PP_4032 +0.4 1.8 putative Outer membrane lipoprotein Blc compare
PP_2260 +0.4 1.9 putative glycerol-phosphate ABC transporter, ATP-binding protein compare
PP_2256 +0.4 2.3 Transcriptional regulator, Cro/CI family compare
PP_5582 +0.4 0.7 conserved protein of unknown function compare
PP_1535 +0.4 2.0 putative Methyltransferase compare
PP_2847 +0.4 1.0 Urease accessory protein UreJ compare
PP_1141 +0.4 2.2 branched-chain amino acids ABC transporter - periplasmic leucine binding subunit compare
PP_2088 +0.4 1.8 RNA polymerase sigma factor SigX compare
PP_4936 +0.4 2.0 O-antigen polymerase compare
PP_1256 +0.4 1.7 putative alpha-ketoglutarate semialdehyde dehydrogenase compare
PP_4843 +0.4 1.7 putative Urea ABC transporter, permease protein compare
PP_2023 +0.4 1.5 Glutathione S-transferase family protein compare
PP_2474 +0.4 1.5 Glutathione S-transferase family protein compare
PP_4391 +0.4 2.6 flagellar basal-body rod protein FlgB compare
PP_4384 +0.4 2.6 Flagellar L-ring protein compare
PP_3705 +0.4 1.6 conserved membrane protein of unknown function compare
PP_1812 +0.4 1.3 conserved protein of unknown function compare
PP_2820 +0.4 0.6 HTH-type transcriptional regulator nfxB compare
PP_3265 +0.4 1.6 putative phosphohydrolase of unknown function compare
PP_4769 +0.4 1.1 conserved protein of unknown function compare
PP_1131 +0.4 1.1 outer membrane lipoprotein compare
PP_1242 +0.4 2.1 conserved protein of unknown function compare
PP_5480 +0.4 1.4 conserved exported protein of unknown function compare
PP_4815 +0.4 2.2 putative Membrane protein compare
PP_4424 +0.3 0.6 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_4265 +0.3 1.2 DNA-binding transcriptional dual regulator compare
PP_0617 +0.3 2.7 Branched-chain amino acid ABC transporter, permease protein compare
PP_4943 +0.3 0.9 putative Glycosyl transferase compare
PP_3141 +0.3 2.1 Glycosyl transferase, WecB/TagA/CpsF family compare
PP_4816 +0.3 1.7 conserved protein of unknown function compare
PP_0574 +0.3 2.9 DNA-binding response regulator, LuxR family compare
PP_1153 +0.3 1.9 putative lipoprotein compare
PP_5055 +0.3 1.6 Sulfurtransferase compare
PP_3539 +0.3 1.2 putative Transcriptional regulator compare
PP_2883 +0.3 0.8 conserved protein of unknown function compare
PP_3153 +0.3 1.9 conserved exported protein of unknown function compare
PP_1570 +0.3 1.3 Head-tail adaptor compare
PP_3338 +0.3 1.4 putative cytochrome bd-type quinol oxidase compare
PP_1876 +0.3 1.2 putative ATP/GTP-binding protein of the AAA+ family compare
PP_5201 +0.3 0.8 conserved protein of unknown function, UPF0149 family compare
PP_1501 +0.3 2.0 conserved protein of unknown function compare
PP_2248 +0.3 1.8 putative transporter compare
PP_3494 +0.3 1.6 conserved exported protein of unknown function compare
PP_4109 +0.3 0.9 conserved protein of unknown function compare
PP_3224 +0.3 2.4 Class II aldolase/adducin domain protein compare
PP_2785 +0.3 1.7 conserved exported protein of unknown function compare
PP_4818 +0.3 2.0 ribosomal protein L11 methyltransferase compare
PP_3481 +0.3 1.0 conserved exported protein of unknown function compare
PP_5288 +0.3 2.3 Phosphomannomutase/phosphoglucomutase compare
PP_5556 +0.3 1.2 putative bacteriophage lysis protein compare
PP_1544 +0.3 1.5 conserved protein of unknown function compare
PP_5477 +0.3 1.4 conserved protein of unknown function compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source rac-3-Hydroxypentanoic Acid in Pseudomonas putida KT2440

For carbon source rac-3-Hydroxypentanoic Acid across organisms