Experiment set10IT038 for Agrobacterium fabrum C58

Compare to:

4-Hydroxybenzoic Acid carbon source

200 most detrimental genes:

  gene name fitness t score description  
Atu6131 +2.0 13.5 TraR Antiactivator compare
Atu0925 +1.7 3.5 hypothetical protein compare
Atu0926 +1.6 6.6 hypothetical protein compare
Atu0931 +1.6 13.4 penicillin binding protein compare
Atu1573 +1.5 3.4 hypothetical protein compare
Atu0533 +1.5 4.9 putative inhibitor of septum formation compare
Atu1327 +1.5 6.2 NADH-ubiquinone oxidoreductase compare
Atu1499 +1.4 9.1 penicillin binding protein conserved
Atu4346 +1.3 7.4 hypothetical protein compare
Atu0479 +1.3 6.4 ABC transporter, substrate binding protein (amino acid) compare
Atu3886 +1.2 8.9 lysophospholipase compare
Atu6138 +1.2 4.4 Repressor of the acc and arc operons compare
Atu4897 +1.2 2.5 hypothetical protein compare
Atu2225 +1.2 9.5 transcriptional regulator compare
Atu1056 +1.1 6.9 hypothetical protein compare
Atu4498 +1.1 5.4 hypothetical protein compare
Atu4162 +1.1 7.0 two-component response regulator compare
Atu3780 +1.1 4.9 hypothetical protein compare
Atu1503 +1.1 1.8 hypothetical protein compare
Atu0977 +1.0 3.1 serine protease DO-like protease compare
Atu4469 +1.0 4.8 iron ABC transporter permease compare
Atu4217 +0.9 2.1 TetR family transcriptional regulator compare
Atu1447 +0.9 2.8 two component sensor kinase compare
Atu0225 +0.9 1.2 hypothetical protein compare
Atu3008 +0.9 1.0 hypothetical protein compare
Atu5517 +0.9 3.4 hypothetical protein compare
Atu5146 +0.9 2.0 hypothetical protein compare
Atu3001 +0.8 2.2 hypothetical protein compare
Atu4471 +0.8 6.4 ABC transporter substrate-binding protein compare
Atu1127 +0.8 2.3 molybdopterin converting factor small subunit compare
Atu1694 +0.8 1.6 hypothetical protein compare
Atu0769 +0.8 1.0 protoheme IX farnesyltransferase compare
Atu0142 +0.8 2.1 cytochrome o ubiquinol oxidase subunit II compare
Atu4519 +0.8 5.1 branched amino acid ABC transporter substrate-binding protein compare
Atu8054 +0.8 1.0 hypothetical protein compare
Atu4144 +0.8 1.1 hypothetical protein compare
Atu4470 +0.8 5.1 iron ABC transporter ATPase compare
Atu0894 +0.8 1.6 ABC transporter, membrane spanning protein compare
Atu1847 +0.8 1.7 hypothetical protein compare
Atu1500 +0.8 2.9 rare lipoprotein A compare
Atu2193 +0.7 1.1 hypothetical protein compare
Atu4468 +0.7 4.4 iron transport ABC transporter permease compare
Atu5121 +0.7 5.4 two component response regulator compare
Atu0524 +0.7 3.8 transcriptional regulator, LuxR family compare
Atu1546 +0.7 2.8 transcriptional regulator, MerR family compare
Atu3697 +0.7 3.0 ATP-dependent protease LA 2 compare
Atu2234 +0.7 1.5 hypothetical protein compare
Atu3120 +0.7 1.3 hypothetical protein compare
Atu3628 +0.7 2.4 hypothetical protein compare
Atu4200 +0.7 1.9 hypothetical protein compare
Atu2044 +0.7 3.1 HFLC protein compare
Atu2344 +0.7 2.1 lactoylglutathione lyase compare
Atu0050 +0.6 2.8 two component response regulator compare
Atu1449 +0.6 2.6 potassium uptake protein compare
Atu3598 +0.6 1.2 thiol:disulfide interchange protein compare
Atu0485 +0.6 3.3 hypothetical protein compare
Atu0786 +0.6 3.0 peptidase, family M16 compare
Atu8165 +0.6 2.0 hypothetical protein compare
Atu8200 +0.6 2.7 hypothetical protein compare
Atu5057 +0.6 0.8 hypothetical protein compare
Atu0780 +0.6 4.5 hypothetical protein compare
Atu1254 +0.6 1.0 transcriptional regulator, ArsR family compare
Atu1570 +0.6 0.8 hypothetical protein compare
Atu2585 +0.6 2.7 hypothetical protein compare
Atu2399 +0.6 1.8 hypothetical protein compare
Atu0464 +0.6 2.8 hypothetical protein compare
Atu1110 +0.6 2.6 cytosol aminopeptidase compare
Atu1818 +0.6 1.1 hypothetical protein compare
Atu2442 +0.6 1.5 hypothetical protein compare
Atu2052 +0.6 3.1 hypothetical protein compare
Atu2489 +0.6 3.3 hypothetical protein compare
Atu3631 +0.6 3.0 hypothetical protein compare
Atu3311 +0.6 4.6 phosphomannose isomerase compare
Atu4677 +0.6 0.8 hypothetical protein compare
Atu2201 +0.6 1.2 hydrolase compare
Atu4516 +0.6 4.8 branched chain amino acid ABC transporter ATPase compare
Atu4515 +0.6 2.5 branched chain amino acid ABC transporter ATPase compare
Atu1888 +0.6 4.3 two component sensor kinase compare
Atu3999 +0.6 1.1 dithiobiotin synthetase compare
Atu3169 +0.6 2.3 sorbitol/mannitol ABC transporter permease compare
Atu0458 +0.5 1.9 hypothetical protein compare
Atu1846 +0.5 0.9 hypothetical protein compare
Atu4166 +0.5 1.4 UDP-glucose 4-epimerase compare
Atu3491 +0.5 2.0 hypothetical protein compare
Atu8167 +0.5 3.8 putative transmembrane protein compare
Atu0971 +0.5 1.8 two component sensor kinase compare
Atu0595 +0.5 4.4 ABC transporter, nucleotide binding/ATPase protein compare
Atu4187 +0.5 1.0 tRNA-Met compare
Atu2441 +0.5 1.9 RNA methylase compare
Atu3353 +0.5 4.0 mannose-1-phosphate guanylyltransferase compare
Atu2496 +0.5 3.0 nitroreducatase compare
Atu2183 +0.5 3.4 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu1470 +0.5 0.9 Camphor resistance protein compare
Atu4518 +0.5 3.5 branched chain amino acid ABC transporter permease compare
Atu2043 +0.5 2.9 htrA family protein compare
Atu1682 +0.5 1.7 hypothetical protein compare
Atu2591 +0.5 3.1 glucosyltransferase compare
Atu2159 +0.5 2.4 outer membrane protein compare
Atu2368 +0.5 0.9 hypothetical protein compare
Atu6159 +0.5 1.6 hypothetical protein compare
Atu0836 +0.5 1.0 Glutathione-S-transferase compare
Atu1176 +0.5 2.1 hypothetical protein compare
Atu6189 +0.5 1.0 protein secretion chaperone compare
Atu0827 +0.5 1.8 hypothetical protein compare
Atu2349 +0.5 1.3 hypothetical protein compare
Atu8019 +0.5 1.8 hypothetical protein compare
Atu4149 +0.5 3.2 UDP-glucose 6-dehydrogenase compare
Atu3926 +0.5 1.6 translation initiation inhibitor compare
Atu3822 +0.5 2.1 hypothetical protein compare
Atu1968 +0.5 1.1 hypothetical protein compare
Atu1760 +0.5 0.8 hypothetical protein compare
Atu1333 +0.5 1.3 outer membrane protein compare
Atu5145 +0.5 1.7 acetyltransferase compare
Atu4164 +0.5 3.8 two component sensor kinase compare
Atu1483 +0.5 1.2 cytochrome b561 compare
Atu3075 +0.5 2.3 TetR family transcriptional regulator compare
Atu4607 +0.5 2.7 sugar acetylase compare
Atu5045 +0.5 1.1 hypothetical protein compare
Atu1058 +0.5 2.1 hypothetical protein compare
Atu0905 +0.5 1.6 dnaK suppressor protein compare
Atu1317 +0.5 2.0 metal dependent hydrolase compare
Atu1782 +0.5 1.6 hypothetical protein compare
Atu1355 +0.5 2.3 hypothetical protein compare
Atu4517 +0.5 3.5 branched chain amino acid ABC transporter permease compare
Atu0251 +0.5 3.3 hypothetical protein compare
Atu2068 +0.5 1.5 hypothetical protein compare
Atu4606 +0.5 3.3 hypothetical protein compare
Atu4160 +0.5 2.5 RNA polymerase sigma factor compare
Atu2057 +0.5 1.3 DNA helicase II compare
Atu1314 +0.5 1.7 transcriptional regulator, TetR family compare
Atu4223 +0.5 1.3 sarcosine oxidase delta subunit compare
Atu6165 +0.5 0.7 hypothetical protein compare
Atu1639 +0.4 2.1 hypothetical protein compare
Atu1683 +0.4 1.2 hypothetical protein compare
Atu3427 +0.4 1.0 hypothetical protein compare
Atu4819 +0.4 2.0 hypothetical protein compare
Atu2352 +0.4 1.1 hypothetical protein compare
Atu2662 +0.4 0.8 acetyltransferase compare
Atu1838 +0.4 2.0 ABC transporter, substrate binding protein (amino acid) compare
Atu0031 +0.4 0.8 PTS system, IIA component compare
Atu8156 +0.4 1.2 hypothetical protein compare
Atu4811 +0.4 3.2 UDP-phosphate alpha N-acetylglucosaminyltransferase compare
Atu8169 +0.4 1.8 hypothetical protein compare
Atu6123 +0.4 2.4 conserved hypothetical protein compare
Atu0687 +0.4 0.7 hypothetical protein compare
Atu1052 +0.4 1.4 hypothetical protein compare
Atu0525 +0.4 2.2 transcriptional regulator, LuxR family compare
Atu0788 +0.4 2.1 hypothetical protein compare
Atu2582 +0.4 2.1 UDP-glucose/GDP-mannose dehydrogenase compare
Atu4608 +0.4 3.3 hypothetical protein compare
Atu0450 +0.4 3.0 transcription antitermination protein compare
Atu4894 +0.4 2.1 transposase compare
Atu0530 +0.4 2.0 UDP-galactose 4-epimerase compare
Atu1608 +0.4 1.9 hypothetical protein compare
Atu3334 +0.4 1.5 hypothetical protein compare
Atu1221 +0.4 1.9 hypothetical protein compare
Atu0300 +0.4 2.0 methyltransferase compare
Atu3507 +0.4 2.5 hypothetical protein compare
Atu2200 +0.4 1.5 cold shock protein compare
Atu4117 +0.4 2.1 dipeptide ABC transporter ATPase compare
Atu1921 +0.4 2.0 hypothetical protein compare
Atu3329 +0.4 2.7 beta alanine--pyruvate transaminase compare
Atu3071 +0.4 1.7 hypothetical protein compare
Atu4838 +0.4 2.4 outer membrane lipoprotein compare
Atu0585 +0.4 0.9 hypothetical protein compare
Atu4799 +0.4 2.7 dTDP-4-dehydrorhamnose 3,5-epimerase compare
Atu4767 +0.4 1.9 hypothetical protein compare
Atu3712 +0.4 0.8 hypothetical protein compare
Atu5164 +0.4 0.6 type IV secretion protein AvhB3 compare
Atu4499 +0.4 1.7 hypothetical protein compare
Atu2338 +0.4 2.8 hypothetical protein compare
Atu2680 +0.4 1.4 ABC transporter, nucleotide binding/ATPase protein compare
Atu3143 +0.4 2.7 hypothetical protein compare
Atu0460 +0.4 1.7 hypothetical protein compare
Atu3644 +0.4 1.8 hypothetical protein compare
Atu5157 +0.4 0.9 hypothetical protein compare
Atu4795 +0.4 3.4 LuxR family transcriptional regulator compare
Atu1440 +0.4 1.5 hypothetical protein compare
Atu0924 +0.4 0.9 hypothetical protein compare
Atu0795 +0.4 1.1 hypothetical protein compare
Atu4618 +0.4 3.1 dTDP-rhamnose-3,5-epimerase compare
Atu8151 +0.4 1.0 hypothetical protein compare
Atu0878 +0.4 1.6 hypothetical protein compare
Atu1967 +0.4 1.5 hypothetical protein compare
Atu1629 +0.4 0.7 transcriptional regulator, ArsR family compare
Atu1007 +0.4 1.0 hypothetical protein compare
Atu2284 +0.4 2.4 hypothetical protein compare
Atu0907 +0.4 1.2 Phosphinothricin acetyltransferase compare
Atu1019 +0.4 0.7 hypothetical protein compare
Atu4527 +0.4 0.8 hypothetical protein compare
Atu0246 +0.4 1.8 acetyltransferase compare
Atu0124 +0.4 1.4 hypothetical protein compare
Atu3184 +0.4 2.9 hypothetical protein compare
Atu3609 +0.4 1.9 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Atu3746 +0.4 1.2 hypothetical protein compare
Atu3632 +0.4 1.8 hypothetical protein compare
Atu4133 +0.4 1.2 hypothetical protein compare
Atu1756 +0.4 1.4 hypothetical protein compare
Atu1550 +0.4 1.7 polypeptide deformylase compare
Atu1077 +0.4 1.2 DNA repair protein compare


Specific Phenotypes

For 11 genes in this experiment

For carbon source 4-Hydroxybenzoic Acid in Agrobacterium fabrum C58

For carbon source 4-Hydroxybenzoic Acid across organisms