Experiment set10IT036 for Pseudomonas putida KT2440

Compare to:

D-Glucose carbon source with 20AA_mix_minus_Val

200 most important genes:

  gene name fitness t score description  
PP_4723 -6.2 -11.9 Carbamoyl-phosphate synthase large chain compare
PP_4724 -6.1 -5.9 Carbamoyl-phosphate synthase small chain compare
PP_3511 -6.0 -10.8 Branched-chain-amino-acid aminotransferase compare
PP_4679 -5.0 -8.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4680 -4.9 -17.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4999 -4.9 -3.4 dihydroorotase-like protein compare
PP_1231 -4.2 -7.8 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5095 -4.2 -2.9 pyrroline-5-carboxylate reductase compare
PP_4678 -4.2 -16.6 Ketol-acid reductoisomerase compare
PP_5128 -3.7 -8.7 Dihydroxy-acid dehydratase compare
PP_0164 -3.0 -12.1 conserved protein of unknown function compare
PP_1664 -2.5 -5.0 phosphoribosylglycinamide formyltransferase 1 compare
PP_3821 -2.4 -9.9 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0787 -2.4 -5.5 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1912 -2.3 -5.9 Phosphate acyltransferase compare
PP_4700 -2.3 -2.7 pantothenate synthetase compare
PP_4902 -2.0 -3.1 Oligoribonuclease compare
PP_3946 -2.0 -2.3 HTH-type transcriptional repressor NicR compare
PP_0339 -2.0 -4.1 Pyruvate dehydrogenase E1 component compare
PP_0691 -1.8 -3.7 Glutamate 5-kinase compare
PP_0293 -1.8 -2.4 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1022 -1.8 -5.7 glucose 6-phosphate-1-dehydrogenase compare
PP_4364 -1.8 -4.0 putative Anti-sigma F factor antagonist compare
PP_1426 -1.8 -10.9 L-aspartate oxidase compare
PP_4129 -1.8 -4.0 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_2336 -1.7 -4.0 aconitate hydratase 1 compare
PP_0393 -1.5 -2.0 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4696 -1.5 -4.4 Nitrogen regulation protein NR(I) compare
PP_4909 -1.4 -5.6 phosphoserine phosphatase compare
PP_4126 -1.4 -2.1 NADH-quinone oxidoreductase subunit I compare
PP_5717 -1.3 -1.9 conserved protein of unknown function compare
PP_4961 -1.3 -1.4 putative Lipoprotein compare
PP_1493 -1.3 -4.3 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0834 -1.3 -1.9 Sec translocation complex subunit YajC compare
PP_1734 -1.3 -2.3 Probable septum site-determining protein MinC compare
PP_4004 -1.2 -3.0 DNA translocase FtsK compare
PP_4124 -1.2 -4.1 NADH-quinone oxidoreductase subunit G compare
PP_2929 -1.2 -6.0 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_5331 -1.2 -3.7 Long-chain acyl-CoA thioester hydrolase compare
PP_5104 -1.2 -7.4 thiazole synthase compare
PP_2928 -1.2 -5.8 Saccharopine dehydrogenase compare
PP_2414 -1.1 -1.8 conserved exported protein of unknown function compare
PP_5346 -1.1 -6.6 pyruvate carboxylase subunit B compare
PP_5155 -1.1 -3.1 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5347 -1.1 -7.2 pyruvate carboxylase subunit A compare
PP_4940 -1.1 -5.9 Putative glycosyltransferase compare
PP_0801 -1.1 -1.8 conserved exported protein of unknown function compare
PP_4120 -1.1 -3.0 NADH-quinone oxidoreductase subunit B compare
PP_0735 -1.1 -2.9 molybdopterin-synthase adenylyltransferase compare
PP_5289 -1.1 -3.3 Acetylglutamate kinase compare
PP_0292 -1.0 -3.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1994 -1.0 -2.1 tRNA pseudouridine (38-40)synthase compare
PP_5705 -1.0 -3.0 protein of unknown function compare
PP_2379 -1.0 -4.1 putative cytochrome oxidase biogenesis protein compare
PP_t10 -1.0 -2.6 tRNA-Pro compare
PP_5706 -1.0 -2.1 Sec translocation complex - SecG subunit compare
PP_4964 -1.0 -2.3 D-erythrose 4-phosphate dehydrogenase compare
PP_1428 -1.0 -1.6 Sigma factor AlgU negative regulatory protein compare
PP_3505 -1.0 -2.5 conserved protein of unknown function compare
PP_4271 -1.0 -1.2 conserved protein of unknown function compare
PP_5508 -1.0 -1.4 conserved protein of unknown function compare
PP_1362 -1.0 -2.6 pyruvate kinase II compare
PP_2378 -1.0 -1.7 Fe/S biogenesis protein NfuA compare
PP_5393 -0.9 -2.0 putative metal-binding chaperone compare
PP_1237 -0.9 -1.7 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_2217 -0.9 -2.9 enoyl-CoA hydratase compare
PP_1269 -0.9 -1.2 Universal stress protein family compare
PP_1906 -0.9 -3.1 ribosomal large subunit pseudouridine synthase C compare
PP_2337 -0.9 -1.7 aconitate isomerase compare
PP_1986 -0.9 -3.1 3-isopropylmalate dehydratase small subunit compare
PP_4722 -0.9 -2.9 Transcription elongation factor GreA compare
PP_5279 -0.9 -2.3 conserved protein of unknown function compare
PP_5230 -0.9 -1.8 Tyrosine recombinase XerC compare
PP_5217 -0.9 -6.7 Polyphosphate kinase compare
PP_t29 -0.9 -1.2 tRNA-Ala compare
PP_4942 -0.9 -2.2 conserved protein of unknown function compare
PP_2214 -0.9 -3.7 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_5666 -0.9 -3.6 putative microcin B17-like processing protein, McbB family compare
PP_5093 -0.9 -1.6 twitching motility protein compare
PP_0888 -0.9 -1.2 Photosynthetic apparatus regulatory protein RegA compare
PP_3748 -0.9 -3.1 conserved hypothetical protein compare
PP_5090 -0.9 -1.3 putative cell division protein compare
PP_4943 -0.9 -1.5 putative Glycosyl transferase compare
PP_4379 -0.9 -4.3 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_5329 -0.9 -3.4 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_5327 -0.9 -5.0 putative phosphate ABC transporter, permease subunit compare
PP_5350 -0.9 -2.5 Transcriptional regulator, RpiR family compare
PP_4917 -0.9 -2.7 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_0833 -0.8 -1.4 queuine tRNA-ribosyltransferase compare
PP_1348 -0.8 -3.2 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_1215 -0.8 -0.9 Crossover junction endodeoxyribonuclease RuvC compare
PP_0914 -0.8 -5.2 GGDEF domain protein compare
PP_4121 -0.8 -3.0 NADH-quinone oxidoreductase subunit C/D compare
PP_4913 -0.8 -3.5 conserved protein of unknown function compare
PP_0967 -0.8 -4.9 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1826 -0.8 -2.0 Hydrolase, isochorismatase family compare
PP_4782 -0.8 -2.7 Phosphomethylpyrimidine kinase compare
PP_4910 -0.8 -1.3 conserved protein of unknown function compare
PP_4406 -0.8 -2.5 conserved protein of unknown function compare
PP_0218 -0.8 -5.1 Sensory box protein compare
PP_0966 -0.8 -4.9 Histidinol dehydrogenase compare
PP_5528 -0.8 -2.3 conserved protein of unknown function compare
PP_1214 -0.8 -2.0 putative transcriptional regulatory protein compare
PP_5216 -0.8 -1.9 exopolyphosphatase compare
PP_1045 -0.8 -1.0 Type II secretion pathway protein XcpP compare
PP_0291 -0.7 -2.7 conserved protein of unknown function compare
PP_4620 -0.7 -4.7 Fumarylacetoacetase compare
PP_4180 -0.7 -2.9 conserved protein of unknown function compare
PP_4937 -0.7 -2.8 toluene tolerance protein compare
PP_1011 -0.7 -5.1 glucokinase compare
PP_5185 -0.7 -3.5 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1366 -0.7 -1.5 Transcriptional regulator MvaT, P16 subunit compare
PP_1988 -0.7 -4.3 3-isopropylmalate dehydrogenase compare
PP_4922 -0.7 -5.1 Phosphomethylpyrimidine synthase compare
PP_0513 -0.7 -1.6 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_5337 -0.7 -3.5 LysR family transcriptional regulator compare
PP_3417 -0.7 -3.0 D-gluconate transporter compare
PP_0683 -0.7 -1.4 conserved protein of unknown function compare
PP_5052 -0.7 -2.9 tRNA(Leu) mC34,mU34 2'-O-ribose methyltransferase, AdoMet-dependent compare
PP_1985 -0.7 -2.7 3-isopropylmalate dehydratase large subunit compare
PP_4890 -0.7 -2.5 ATP phosphoribosyltransferase regulatory subunit compare
PP_4993 -0.7 -1.9 Glutathione synthetase compare
PP_2088 -0.7 -2.6 RNA polymerase sigma factor SigX compare
PP_1761 -0.7 -4.7 diguanylate cyclase with phosphodiesterase domain compare
PP_0290 -0.7 -2.9 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1217 -0.7 -2.1 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_5022 -0.7 -1.3 Glutamine transport ATP-binding protein GlnQ compare
PP_3730 -0.7 -1.4 Transcriptional regulatory protein AruR compare
PP_1079 -0.7 -2.8 Ornithine carbamoyltransferase compare
PP_4370 -0.7 -3.3 Flagellar hook-basal body complex protein FliE compare
PP_5359 -0.7 -2.2 CobW/P47K family protein compare
PP_2307 -0.7 -1.3 conserved protein of unknown function compare
PP_1559 -0.7 -3.1 Holin compare
PP_3919 -0.7 -3.0 conserved protein of unknown function compare
PP_0841 -0.7 -3.0 DNA-binding transcriptional dual regulator 2Fe-2S cluster IscR compare
PP_4619 -0.7 -3.8 Maleylacetoacetate isomerase compare
PP_1018 -0.7 -3.0 mannose/glucose ABC transporter - ATP binding subunit conserved
PP_3935 -0.7 -2.6 conserved protein of unknown function compare
PP_0401 -0.7 -1.5 Ribosomal RNA small subunit methyltransferase A compare
PP_2302 -0.6 -2.9 DNA-binding, ATP-dependent protease compare
PP_5338 -0.6 -1.4 aspartate ammonia-lyase compare
PP_5610 -0.6 -1.4 protein of unknown function compare
PP_1690 -0.6 -3.0 conserved protein of unknown function compare
PP_0195 -0.6 -1.5 conserved protein of unknown function compare
PP_4669 -0.6 -2.3 OmpA family protein compare
PP_4143 -0.6 -2.8 conserved protein of unknown function compare
PP_0184 -0.6 -2.5 Argininosuccinate lyase compare
PP_5348 -0.6 -4.5 Transcriptional regulator, LysR family compare
PP_5328 -0.6 -2.9 putative phosphate transport system permease protein compare
PP_1629 -0.6 -2.6 Protein RecA compare
PP_2215 -0.6 -2.5 acetyl-CoA acetyltransferase compare
PP_3312 -0.6 -1.0 putative Heat shock protein compare
PP_4358 -0.6 -3.4 flagellar synthesis, switching and energizing component compare
PP_4265 -0.6 -1.7 DNA-binding transcriptional dual regulator compare
PP_4131 -0.6 -2.8 NADH-quinone oxidoreductase subunit N compare
PP_4532 -0.6 -1.3 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_4804 -0.6 -1.8 RlpA-like lipoprotein compare
PP_4988 -0.6 -3.1 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_4695 -0.6 -3.7 Sensory box histidine kinase compare
PP_3837 -0.6 -1.5 inner membrane protein of unknown function compare
PP_3682 -0.6 -2.1 conserved protein of unknown function compare
PP_2340 -0.6 -2.2 conserved protein of unknown function compare
PP_4787 -0.6 -2.0 putative protein with nucleoside triphosphate hydrolase domain compare
PP_4546 -0.6 -1.9 ATP-dependent helicase HrpA compare
PP_2932 -0.6 -3.5 Amidase family protein compare
PP_4355 -0.6 -1.9 flagellar export apparatus subunit compare
PP_2341 -0.6 -1.5 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_4720 -0.6 -1.7 putative RNA binding protein compare
PP_0306 -0.6 -1.6 conserved protein of unknown function compare
PP_5597 -0.6 -1.9 conserved protein of unknown function compare
PP_1041 -0.6 -1.4 twin arginine protein export complex subunit compare
PP_2299 -0.6 -2.1 Trigger factor compare
PP_5241 -0.6 -1.9 DNA-binding response regulator, LuxR family compare
PP_5015 -0.6 -1.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1233 -0.6 -2.4 sulfurtransferase compare
PP_1013 -0.6 -3.1 Sensor histidine kinase compare
PP_4726 -0.6 -1.5 Chaperone protein DnaJ compare
PP_4880 -0.6 -3.0 exoribonuclease R compare
PP_3407 -0.6 -1.8 conserved protein of unknown function compare
PP_1770 -0.5 -1.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_5475 -0.5 -1.4 conserved protein of unknown function compare
PP_4693 -0.5 -1.6 RNA polymerase-binding transcription factor DksA compare
PP_4593 -0.5 -1.0 conserved protein of unknown function compare
PP_5548 -0.5 -1.6 protein of unknown function compare
PP_1009 -0.5 -2.5 glyceraldehyde-3-phosphate dehydrogenase compare
PP_4470 -0.5 -1.4 putative transcriptional regulator (Arc domain-containing) compare
PP_4133 -0.5 -1.4 Transcriptional regulator-related protein compare
PP_1314 -0.5 -3.3 putative NAD(P)-linked reductase compare
PP_5000 -0.5 -0.9 peptidase component of the ATP-dependent HslVU protease compare
PP_2497 -0.5 -1.8 conserved protein of unknown function compare
PP_0874 -0.5 -1.1 conserved protein of unknown function compare
PP_5278 -0.5 -2.7 4-guanidinobutyraldehyde dehydrogenase compare
PP_1555 -0.5 -2.2 putative Phage integrase compare
PP_3286 -0.5 -2.4 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_2018 -0.5 -2.5 adhesin-associated BNR repeat protein (from data) compare
PP_0965 -0.5 -3.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1702 -0.5 -1.6 Recombination-associated protein RdgC compare
PP_3926 -0.5 -1.5 short-chain dehydrogenase compare
PP_5313 -0.5 -1.4 DNA-binding protein HU-alpha compare
PP_3904 -0.5 -1.3 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in carbon source experiments

For carbon source D-Glucose across organisms