Experiment set10IT034 for Pseudomonas putida KT2440

Compare to:

D-Glucose carbon source with 20AA_mix_minus_Trp

200 most important genes:

  gene name fitness t score description  
PP_4723 -6.6 -7.9 Carbamoyl-phosphate synthase large chain compare
PP_4724 -5.8 -6.9 Carbamoyl-phosphate synthase small chain compare
PP_1995 -5.8 -8.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0422 -5.3 -5.9 Indole-3-glycerol phosphate synthase compare
PP_0082 -5.2 -7.1 tryptophan synthase alpha chain compare
PP_0417 -5.1 -21.5 Anthranilate synthase component 1 compare
PP_4999 -4.8 -3.3 dihydroorotase-like protein compare
PP_0083 -4.3 -8.7 tryptophan synthase beta chain compare
PP_0787 -4.3 -4.0 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0421 -4.2 -8.0 Anthranilate phosphoribosyltransferase compare
PP_1231 -3.6 -7.4 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0420 -2.9 -8.1 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4700 -2.9 -2.0 pantothenate synthetase compare
PP_0691 -2.8 -4.9 Glutamate 5-kinase compare
PP_1912 -2.7 -5.7 Phosphate acyltransferase compare
PP_5095 -2.6 -3.0 pyrroline-5-carboxylate reductase compare
PP_1664 -2.3 -4.4 phosphoribosylglycinamide formyltransferase 1 compare
PP_1468 -2.2 -3.8 Tyrosine recombinase XerD compare
PP_1734 -2.2 -2.9 Probable septum site-determining protein MinC compare
PP_4910 -2.1 -2.4 conserved protein of unknown function compare
PP_0164 -2.1 -7.5 conserved protein of unknown function compare
PP_4696 -2.0 -5.5 Nitrogen regulation protein NR(I) compare
PP_2337 -2.0 -3.1 aconitate isomerase compare
PP_2378 -1.9 -2.2 Fe/S biogenesis protein NfuA compare
PP_2336 -1.9 -4.0 aconitate hydratase 1 compare
PP_4136 -1.8 -1.2 Transcriptional regulator, LuxR family compare
PP_5028 -1.7 -3.8 proline iminopeptidase compare
PP_1426 -1.7 -8.2 L-aspartate oxidase compare
PP_3821 -1.7 -9.4 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0339 -1.6 -3.7 Pyruvate dehydrogenase E1 component compare
PP_5331 -1.6 -5.5 Long-chain acyl-CoA thioester hydrolase compare
PP_4364 -1.6 -5.2 putative Anti-sigma F factor antagonist compare
PP_0293 -1.5 -1.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4940 -1.5 -6.1 Putative glycosyltransferase compare
PP_4964 -1.5 -3.6 D-erythrose 4-phosphate dehydrogenase compare
PP_3484 -1.5 -4.6 Response regulator receiver protein compare
PP_t29 -1.5 -2.3 tRNA-Ala compare
PP_0735 -1.4 -1.8 molybdopterin-synthase adenylyltransferase compare
PP_4917 -1.4 -3.8 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_1366 -1.4 -1.6 Transcriptional regulator MvaT, P16 subunit compare
PP_4782 -1.4 -5.6 Phosphomethylpyrimidine kinase compare
PP_2929 -1.4 -8.0 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_4909 -1.3 -6.1 phosphoserine phosphatase compare
PP_0833 -1.3 -1.7 queuine tRNA-ribosyltransferase compare
PP_2928 -1.3 -6.4 Saccharopine dehydrogenase compare
PP_3926 -1.3 -1.4 short-chain dehydrogenase compare
PP_0393 -1.3 -1.7 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0888 -1.3 -2.4 Photosynthetic apparatus regulatory protein RegA compare
PP_1493 -1.3 -2.9 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4895 -1.3 -2.8 tRNA dimethylallyltransferase compare
PP_2160 -1.3 -3.2 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_1022 -1.2 -4.4 glucose 6-phosphate-1-dehydrogenase compare
PP_5104 -1.2 -5.8 thiazole synthase compare
PP_4131 -1.2 -4.7 NADH-quinone oxidoreductase subunit N compare
PP_2302 -1.1 -4.7 DNA-binding, ATP-dependent protease compare
PP_5114 -1.1 -1.6 putative adenine methyltransferase compare
PP_4517 -1.1 -2.5 conserved protein of unknown function compare
PP_4271 -1.1 -1.3 conserved protein of unknown function compare
PP_1733 -1.1 -1.8 membrane ATPase of the MinC-MinD-MinE system compare
PP_2414 -1.0 -1.0 conserved exported protein of unknown function compare
PP_5289 -1.0 -3.0 Acetylglutamate kinase compare
PP_t10 -1.0 -1.9 tRNA-Pro compare
PP_2309 -1.0 -1.4 conserved protein of unknown function compare
PP_1208 -1.0 -2.4 conserved protein of unknown function, SlyX family compare
PP_0362 -1.0 -6.2 Biotin synthase compare
PP_1020 -1.0 -2.4 putative glucose-6-phosphate 1-epimerase compare
PP_4121 -1.0 -3.3 NADH-quinone oxidoreductase subunit C/D compare
PP_0022 -1.0 -1.1 hypothetical protein compare
PP_5155 -0.9 -4.1 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1233 -0.9 -2.8 sulfurtransferase compare
PP_2379 -0.9 -3.9 putative cytochrome oxidase biogenesis protein compare
PP_2217 -0.9 -2.4 enoyl-CoA hydratase compare
PP_2847 -0.9 -1.9 Urease accessory protein UreJ compare
PP_0366 -0.9 -5.1 dethiobiotin synthetase compare
PP_3245 -0.9 -1.2 conserved protein of unknown function compare
PP_1994 -0.9 -1.7 tRNA pseudouridine (38-40)synthase compare
PP_2029 -0.9 -1.9 von Willebrand factor type A domain protein compare
PP_5350 -0.9 -2.4 Transcriptional regulator, RpiR family compare
PP_0218 -0.9 -5.7 Sensory box protein compare
PP_0966 -0.9 -5.3 Histidinol dehydrogenase compare
PP_4124 -0.9 -3.1 NADH-quinone oxidoreductase subunit G compare
PP_1428 -0.8 -1.3 Sigma factor AlgU negative regulatory protein compare
PP_2402 -0.8 -1.4 putative Sensor histidine kinase compare
PP_1770 -0.8 -3.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_1348 -0.8 -2.9 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_0967 -0.8 -4.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_2999 -0.8 -1.5 Glyoxalase family protein compare
PP_0289 -0.8 -4.1 Imidazoleglycerol-phosphate dehydratase compare
PP_0184 -0.8 -3.1 Argininosuccinate lyase compare
PP_0290 -0.8 -4.0 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1237 -0.8 -1.2 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_0872 -0.8 -3.7 Peptide chain release factor 3 compare
PP_1011 -0.8 -4.6 glucokinase compare
PP_1691 -0.8 -2.2 conserved protein of unknown function compare
PP_5600 -0.8 -2.6 conserved protein of unknown function compare
PP_0001 -0.8 -1.1 probable chromosome-partitioning protein compare
PP_0364 -0.8 -4.2 pimeloyl-[acp] methyl ester esterase compare
PP_4004 -0.8 -2.1 DNA translocase FtsK compare
PP_4593 -0.8 -1.8 conserved protein of unknown function compare
PP_3930 -0.8 -2.2 conserved exported protein of unknown function compare
PP_1906 -0.8 -2.2 ribosomal large subunit pseudouridine synthase C compare
PP_1935 -0.8 -1.2 Transcriptional regulator, Cro/CI family compare
PP_5000 -0.8 -0.9 peptidase component of the ATP-dependent HslVU protease compare
PP_1164 -0.8 -1.4 Transcriptional regulator, LysR family compare
PP_3884 -0.8 -2.3 Phage holin, lambda family compare
PP_1226 -0.7 -2.3 pre-queuosine 0 synthase compare
PP_1322 -0.7 -1.6 putative Lipoprotein compare
PP_3512 -0.7 -2.5 conserved membrane protein of unknown function compare
PP_0834 -0.7 -1.5 Sec translocation complex subunit YajC compare
PP_0832 -0.7 -2.6 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_2214 -0.7 -2.1 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_4130 -0.7 -2.2 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4824 -0.7 -3.0 Sensor histidine kinase/response regulator compare
PP_5346 -0.7 -4.9 pyruvate carboxylase subunit B compare
PP_5347 -0.7 -5.3 pyruvate carboxylase subunit A compare
PP_5329 -0.7 -2.7 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_1142 -0.7 -1.1 conserved protein of unknown function compare
PP_5270 -0.7 -3.4 D-amino-acid:quinone oxidoreductase (deaminating) compare
PP_1508 -0.7 -1.9 conserved protein of unknown function compare
PP_2898 -0.7 -2.1 conserved exported protein of unknown function compare
PP_4787 -0.7 -2.3 putative protein with nucleoside triphosphate hydrolase domain compare
PP_3505 -0.7 -1.9 conserved protein of unknown function compare
PP_1985 -0.7 -2.4 3-isopropylmalate dehydratase large subunit compare
PP_5705 -0.7 -1.6 protein of unknown function compare
PP_0513 -0.7 -1.4 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_5185 -0.7 -2.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1673 -0.7 -3.0 cobyrinate a,c-diamide synthase compare
PP_4804 -0.7 -1.9 RlpA-like lipoprotein compare
PP_5580 -0.7 -1.9 protein of unknown function compare
PP_4997 -0.7 -1.3 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_0363 -0.7 -4.2 8-amino-7-oxononanoate synthase compare
PP_3892 -0.7 -1.0 conserved protein of unknown function compare
PP_1986 -0.7 -1.8 3-isopropylmalate dehydratase small subunit compare
PP_2215 -0.7 -2.1 acetyl-CoA acetyltransferase compare
PP_0002 -0.6 -3.4 probable chromosome partition protein compare
PP_4546 -0.6 -1.8 ATP-dependent helicase HrpA compare
PP_0801 -0.6 -1.2 conserved exported protein of unknown function compare
PP_1410 -0.6 -1.2 conserved protein of unknown function compare
PP_4922 -0.6 -4.0 Phosphomethylpyrimidine synthase compare
PP_5338 -0.6 -1.4 aspartate ammonia-lyase compare
PP_1186 -0.6 -1.3 two component system DNA-binding transcriptional dual regulator compare
PP_1128 -0.6 -1.9 OmpA family protein compare
PP_1012 -0.6 -2.5 DNA-binding response regulator compare
PP_4480 -0.6 -4.4 arginine N-succinyltransferase, subunit alpha compare
PP_4897 -0.6 -1.8 N-acetylmuramoyl-L-alanine amidase compare
PP_1988 -0.6 -3.6 3-isopropylmalate dehydrogenase compare
PP_0979 -0.6 -2.6 DNA polymerase III subunit chi compare
PP_5337 -0.6 -3.0 LysR family transcriptional regulator compare
PP_0566 -0.6 -0.9 translation-related factor compare
PP_0775 -0.6 -1.4 conserved protein of unknown function compare
PP_5279 -0.6 -1.8 conserved protein of unknown function compare
PP_4989 -0.6 -1.2 Protein PilJ compare
PP_2765 -0.6 -1.2 putative Sulfonate monooxygenase MsuD compare
PP_4722 -0.6 -1.9 Transcription elongation factor GreA compare
PP_4129 -0.6 -1.8 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_3946 -0.6 -0.8 HTH-type transcriptional repressor NicR compare
PP_4943 -0.6 -0.8 putative Glycosyl transferase compare
PP_4620 -0.6 -3.0 Fumarylacetoacetase compare
PP_1079 -0.6 -2.7 Ornithine carbamoyltransferase compare
PP_1215 -0.6 -0.6 Crossover junction endodeoxyribonuclease RuvC compare
PP_5348 -0.6 -3.3 Transcriptional regulator, LysR family compare
PP_5575 -0.6 -1.3 conserved protein of unknown function compare
PP_5014 -0.6 -2.0 Phosphoribosyl-AMP cyclohydrolase compare
PP_0550 -0.6 -2.6 conserved protein of unknown function compare
PP_5352 -0.6 -3.7 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_5508 -0.6 -0.9 conserved protein of unknown function compare
PP_4811 -0.6 -2.3 Gamma-glutamyl phosphate reductase compare
PP_0673 -0.6 -1.5 conserved protein of unknown function compare
PP_2826 -0.6 -2.0 Transcriptional regulator MexT compare
PP_3810 -0.6 -1.8 conserved protein of unknown function compare
PP_5689 -0.6 -2.9 conserved protein of unknown function compare
PP_5486 -0.6 -1.8 conserved protein of unknown function compare
PP_5317 -0.6 -1.7 Probable chorismate pyruvate-lyase compare
PP_4706 -0.6 -2.5 conserved protein of unknown function compare
PP_1328 -0.6 -1.8 Protein MraZ compare
PP_4268 -0.6 -0.6 nucleoid-associated broad specificity regulator compare
PP_1826 -0.6 -1.4 Hydrolase, isochorismatase family compare
PP_4379 -0.6 -1.9 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_0949 -0.6 -2.6 putative ATP-binding protein UPF0042 compare
PP_3206 -0.6 -3.2 conserved protein of unknown function compare
PP_2526 -0.6 -1.8 conserved membrane protein of unknown function compare
PP_4984 -0.6 -3.9 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_0965 -0.6 -3.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0758 -0.6 -1.8 conserved protein of unknown function compare
PP_2280 -0.5 -1.0 conserved protein of unknown function compare
PP_4693 -0.5 -1.8 RNA polymerase-binding transcription factor DksA compare
PP_2305 -0.5 -3.1 conserved protein of unknown function compare
PP_0914 -0.5 -4.0 GGDEF domain protein compare
PP_2307 -0.5 -1.4 conserved protein of unknown function compare
PP_1761 -0.5 -3.9 diguanylate cyclase with phosphodiesterase domain compare
PP_0951 -0.5 -2.6 Ribosome hibernation promoting factor compare
PP_4671 -0.5 -2.4 conserved exported protein of unknown function compare
PP_3052 -0.5 -1.0 conserved protein of unknown function compare
PP_0120 -0.5 -2.7 putative zinc ABC transporter compare
PP_1018 -0.5 -2.9 mannose/glucose ABC transporter - ATP binding subunit conserved
PP_3247 -0.5 -1.8 Transporter, bile acid/Na+ symporter family compare
PP_4695 -0.5 -3.5 Sensory box histidine kinase compare
PP_1938 -0.5 -1.7 conserved protein of unknown function compare
PP_3244 -0.5 -1.8 Magnesium transporter, MgtC family compare
PP_5029 -0.5 -3.6 N-formylglutamate deformylase compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in carbon source experiments

For carbon source D-Glucose across organisms