Experiment set10IT034 for Agrobacterium fabrum C58

Compare to:

p-Coumaric acid carbon source

200 most important genes:

  gene name fitness t score description  
Atu1750 -7.4 -7.2 phosphoribosyl c-AMP cyclohydrolase compare
Atu0679 -6.4 -6.3 ATP phosphoribosyltransferase compare
Atu2289 -6.2 -18.4 anthranilate synthase component I and II compare
Atu2791 -6.0 -9.2 3-isopropylmalate dehydrogenase compare
Atu0399 -5.9 -8.1 dihydroorotase compare
Atu0030 -5.8 -2.7 phosphocarrier protein HPr compare
Atu0537 -5.7 -5.6 histidinol dehydrogenase compare
Atu3740 -5.7 -11.5 fructose bisphosphate aldolase compare
Atu3706 -5.7 -8.7 D-3-phosphoglycerate dehydrogenase compare
Atu1140 -5.7 -7.0 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1845 -5.6 -6.6 phosphoribosylformylglycinamidine synthase I compare
Atu2264 -5.6 -14.9 2-isopropylmalate synthase compare
Atu1687 -5.5 -9.5 anthranilate phosphoribosyltransferase compare
Atu0678 -5.5 -6.5 histidyl-tRNA synthetase compare
Atu0803 -5.5 -22.2 pyruvate,orthophosphate dikinase compare
Atu2036 -5.4 -15.9 acetolactate synthase III, large subunit compare
Atu0501 -5.4 -16.9 acyl-CoA dehydrogenase compare
Atu1417 -5.4 -10.9 enoyl-CoA hydratase compare
Atu1141 -5.3 -7.7 Phosphoribosylglycinamide synthetase compare
Atu0536 -5.3 -8.9 hypothetical protein compare
Atu0099 -5.2 -13.0 prephenate dehydratase compare
Atu1844 -5.2 -4.9 Phosphoribosylformylglycinamidine synthetase compare
Atu0432 -5.1 -9.7 O-succinylhomoserine sulfhydrylase compare
Atu0038 -5.0 -5.5 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0608 -5.0 -15.7 transcriptional regulator compare
Atu2650 -5.0 -14.6 glycerol-3-phosphate dehydrogenase compare
Atu3754 -4.9 -8.0 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1688 -4.9 -8.2 indole-3-glycerol-phosphate synthase compare
Atu1308 -4.9 -9.8 aspartate carbamoyl transferase catalytic subunit compare
Atu2718 -4.8 -9.8 homoserine O-succinyltransferase compare
Atu0647 -4.8 -9.7 phosphoribosylamine--glycine ligase compare
Atu1620 -4.8 -13.7 triosephosphate isomerase compare
Atu2709 -4.8 -19.0 3-isopropylmalate dehydratase, large subunit compare
Atu0047 -4.7 -19.7 malate synthase G compare
Atu1205 -4.7 -16.7 threonine dehydratase compare
Atu0035 -4.7 -14.2 phosphoenolpyruvate carboxykinase compare
Atu0607 -4.7 -17.1 isocitrate lyase compare
Atu0503 -4.7 -19.0 enoyl-CoA hydratase compare
Atu1588 -4.7 -10.4 homoserine dehydrogenase compare
Atu0486 -4.7 -8.9 dihydroorotate dehydrogenase compare
Atu2040 -4.7 -7.1 phosphoserine phosphatase compare
Atu0502 -4.6 -9.3 acetyl-CoA acetyltransferase compare
Atu0298 -4.6 -9.5 orotidine 5 compare
Atu1850 -4.5 -6.2 phosphoribosylformylglycinamidine synthetase II compare
Atu3739 -4.5 -4.0 phosphoglycerate kinase compare
Atu0400 -4.5 -8.0 orotate phosphoribosyltransferase compare
Atu1421 -4.4 -10.2 hypothetical protein conserved
Atu1075 -4.4 -7.9 amidophosphoribosyltransferase compare
Atu3755 -4.4 -6.6 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu3707 -4.3 -5.1 phosphoserine aminotransferase compare
Atu3731 -4.3 -7.8 5-formyltetrahydrofolate cyclo-ligase compare
Atu4505 -4.3 -11.1 LacI family transcriptional regulator compare
Atu1307 -4.0 -7.5 dihydroorotase compare
Atu0017 -4.0 -4.7 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu3469 -3.9 -3.7 phosphoglyceromutase compare
Atu2684 -3.8 -3.6 hypothetical protein compare
Atu0807 -3.7 -10.4 metallo-beta-lactamase superfamily protein compare
Atu4538 -3.6 -13.1 3-carboxy-cis,cis-muconate cycloisomerase compare
Atu3885 -3.6 -8.5 inositol monophosphatase compare
Atu2015 -3.6 -16.6 aminotransferase compare
Atu0039 -3.6 -3.0 imidazoleglycerol-phosphate synthase cyclase compare
Atu0043 -3.5 -4.1 imidazoleglycerol-phosphate dehydratase compare
Atu3483 -3.5 -5.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu2790 -3.4 -3.0 3-isopropylmalate dehydratase, small subunit compare
Atu3482 -3.3 -9.8 pantoate--beta-alanine ligase compare
Atu1359 -3.3 -2.1 dnaK deletion suppressor protein compare
Atu0040 -3.3 -2.0 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu1462 -3.2 -15.9 glycine cleavage system protein P2 compare
Atu3486 -3.2 -4.7 DeoR family transcriptional regulator compare
Atu2115 -3.1 -13.9 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu0041 -3.1 -3.6 glutamine amidotransferase compare
Atu1030 -3.0 -2.0 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu4541 -3.0 -5.9 carboxymuconolactone decarboxylase compare
Atu2205 -3.0 -9.2 transcriptional regulator, MarR family compare
Atu1463 -3.0 -9.7 glycine cleavage system component H compare
Atu4549 -2.9 -11.6 beta-ketoadipyl CoA thiolase conserved
Atu1464 -2.9 -9.1 glycine cleavage system T protein, aminomethyltransferase compare
Atu4217 -2.8 -2.3 TetR family transcriptional regulator compare
Atu1422 -2.8 -7.2 transcriptional regulator, MarR family compare
Atu2155 -2.8 -18.1 methionine synthase compare
Atu1086 -2.8 -15.1 MFS permease compare
Atu0331 -2.8 -2.6 sigma-54 modulation protein compare
Atu4548 -2.5 -13.2 3-oxoadipate CoA-transferase subunit B conserved
Atu1087 -2.5 -9.4 secretion protein compare
Atu6098 -2.5 -1.9 transcriptional regulator, HTH family compare
Atu4542 -2.4 -9.7 beta-ketoadipate enol-lactone hydrolase conserved
Atu3730 -2.3 -2.2 hypothetical protein compare
Atu2747 -2.3 -10.2 hypothetical protein compare
Atu1810 -2.1 -1.8 hypothetical protein compare
Atu4547 -2.1 -9.2 3-oxoadipate CoA-transferase subunit A compare
Atu0029 -2.1 -6.3 S-adenosylhomocysteine hydrolase compare
Atu1415 -2.0 -6.5 3-hydroxyacyl-CoA dehydrogenase type II compare
Atu1589 -2.0 -5.7 aminotransferase, class I compare
Atu1686 -2.0 -12.6 peptidyl-prolyl cis-trans isomerse D compare
Atu4540 -1.9 -3.5 protocatechuate 3,4-dioxygenase subunit beta compare
Atu4539 -1.9 -10.0 protocatechuate 3,4-dioxygenase alpha chain conserved
Atu3783 -1.8 -10.1 glutamate synthase subunit beta compare
Atu2125 -1.8 -2.0 ABC transporter, nucleotide binding/ATPase protein compare
Atu4711 -1.7 -6.0 two component sensor kinase compare
Atu6114 -1.7 -2.1 hypothetical protein compare
Atu4773 -1.7 -2.2 two component response regulator compare
Atu0606 -1.7 -2.4 hypothetical protein compare
Atu4098 -1.7 -10.2 quinolinate synthetase compare
Atu0434 -1.6 -3.3 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu2554 -1.6 -2.6 lysyl-tRNA synthetase compare
Atu1546 -1.6 -6.0 transcriptional regulator, MerR family compare
Atu0062 -1.6 -7.6 transcriptional regulator, ROK family compare
Atu4545 -1.6 -6.7 AraC family transcriptional regulator conserved
Atu0641 -1.5 -4.9 hypothetical protein compare
Atu4096 -1.5 -7.4 nicotinate-nucleotide pyrophosphorylase compare
Atu0031 -1.5 -1.9 PTS system, IIA component compare
Atu4544 -1.5 -9.2 4-hydroxybenzoate 3-monooxygenase conserved
Atu5125 -1.5 -5.0 GntR family transcriptional regulator compare
Atu3337 -1.5 -8.3 LacI family transcriptional regulator compare
Atu8115 -1.4 -5.7 Hypothetical Protein compare
Atu4514 -1.4 -5.5 RpiR family transcriptional regulator compare
Atu1456 -1.4 -7.8 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu3763 -1.4 -1.8 hypothetical protein compare
Atu3784 -1.4 -11.3 glutamate synthase large subunit compare
Atu1774 -1.4 -7.0 ABC transporter, substrate binding protein (peptide) compare
Atu2225 -1.3 -7.0 transcriptional regulator compare
Atu4099 -1.3 -7.2 hypothetical protein compare
Atu0346 -1.3 -2.6 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu2207 -1.3 -3.0 two component sensor kinase compare
Atu1455 -1.3 -4.9 hypothetical protein compare
Atu0188 -1.2 -3.3 ABC transporter, membrane spanning protein (peptide) compare
Atu3732 -1.2 -5.3 hemolysin compare
Atu2184 -1.2 -5.5 transcriptional regulator, AsnC family compare
Atu3963 -1.2 -7.7 GntR family transcriptional regulator compare
Atu2267 -1.2 -6.4 hypothetical protein compare
Atu2745 -1.2 -8.8 acetyl-coenzyme A synthetase compare
Atu0190 -1.2 -5.3 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu0876 -1.2 -1.8 superoxide dismutase compare
Atu0590 -1.2 -7.4 transcriptional regulator repressor compare
Atu2640 -1.2 -3.9 hypothetical protein compare
Atu0601 -1.2 -5.8 oxidoreductase compare
Atu1748 -1.2 -6.5 NIFU-like protein compare
Atu3008 -1.2 -0.8 hypothetical protein compare
Atu1904 -1.1 -1.8 transcriptional regulator compare
Atu2821 -1.1 -5.6 transcriptional regulator, GntR family compare
Atu3908 -1.1 -7.3 GntR family transcriptional regulator compare
Atu1454 -1.1 -6.4 siroheme synthase compare
Atu0723 -1.1 -1.8 FAD dependent oxidoreductase compare
Atu2209 -1.1 -4.3 pyrroline-5-carboxylate reductase compare
Atu4317 -1.1 -4.0 TetR family transcriptional regulator compare
Atu3290 -1.1 -7.0 phosphomethylpyrimidine kinase compare
Atu2578 -1.1 -4.2 cAMP-dependent protein kinase regulatory subunit compare
Atu0036 -1.0 -1.9 hypothetical protein compare
Atu3579 -1.0 -2.5 lactoylglutathione lyase compare
Atu4232 -1.0 -5.2 GntR family transcriptional regulator compare
Atu0663 -1.0 -6.8 hypothetical protein compare
Atu2802 -1.0 -4.4 precorrin-8X methylmutase compare
Atu2662 -1.0 -1.5 acetyltransferase compare
Atu0405 -1.0 -7.7 long-chain-fatty-acid-CoA-ligase compare
Atu2832 -1.0 -2.3 tRNA modification GTPase compare
Atu0498 -1.0 -4.4 hypothetical protein compare
Atu4674 -1.0 -7.1 GntR family transcriptional regulator compare
Atu1449 -1.0 -4.1 potassium uptake protein compare
Atu1714 -1.0 -1.7 exonuclease III compare
Atu2800 -1.0 -3.3 precorrin-3B C17-methyltransferase compare
Atu3485 -1.0 -4.9 short chain dehydrogenase compare
Atu0401 -1.0 -4.7 fructokinase compare
Atu0923 -1.0 -5.0 hypothetical protein compare
Atu3791 -0.9 -5.2 L-asparaginase compare
Atu2799 -0.9 -3.8 precorrin-6x reductase compare
Atu1580 -0.9 -5.4 ABC transporter, nucleotide binding/ATPase protein (amino acid) compare
Atu1581 -0.9 -2.0 hypothetical protein compare
Atu2831 -0.9 -3.6 glucose inhibited division protein A compare
Atu2809 -0.9 -5.1 cobalamin biosynthesis protein compare
Atu3794 -0.9 -4.9 FadR family transcriptional regulator compare
Atu2163 -0.9 -1.6 hypothetical protein compare
Atu0189 -0.9 -2.6 ABC transporter, membrane spanning protein (peptide) compare
Atu5075 -0.9 -5.3 GntR family transcriptional regulator compare
Atu2548 -0.9 -6.3 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu1286 -0.9 -4.4 hypothetical protein compare
Atu4743 -0.9 -4.2 LacI family transcriptional regulator compare
Atu0893 -0.9 -2.6 ABC transporter, nucleotide binding/ATPase protein compare
Atu2807 -0.9 -3.8 cob(I)alamin adenosyltransferase compare
Atu0011 -0.9 -4.7 transcriptional regulator compare
Atu2801 -0.9 -3.4 precorrin-2 C20 methyltransferase compare
Atu2808 -0.8 -4.5 cobyric acid synthase compare
Atu8130 -0.8 -5.4 hypothetical protein compare
Atu2494 -0.8 -5.5 NAD(P)+ transhydrogenase beta chain compare
Atu8082 -0.8 -1.3 hypothetical protein compare
Atu3775 -0.8 -1.6 hypothetical protein compare
Atu2793 -0.8 -3.4 cobyrinic acid a,c-diamide synthase compare
Atu0894 -0.8 -1.2 ABC transporter, membrane spanning protein compare
Atu4543 -0.8 -2.6 LysR family transcriptional regulator compare
Atu1542 -0.8 -2.9 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu4576 -0.8 -5.0 ROK family transcriptional regulator compare
Atu4567 -0.8 -3.7 ROK family transcriptional regulator compare
Atu0726 -0.8 -5.8 ring hydroxylating dioxygenase, alpha-subunit compare
Atu2493 -0.8 -5.6 NAD(P)+ transhydrogenase compare
Atu0769 -0.8 -1.4 protoheme IX farnesyltransferase compare
Atu3878 -0.8 -5.8 transcriptional regulator compare
Atu2795 -0.8 -3.7 cobalamin biosynthetic protein compare
Atu3466 -0.8 -2.5 ArsR family transcriptional regulator compare
Atu1242 -0.8 -5.2 cytochrome oxidase assembly factor compare
Atu2472 -0.8 -1.2 hypothetical protein compare
Atu0533 -0.8 -1.3 putative inhibitor of septum formation compare


Specific Phenotypes

For 15 genes in this experiment

For carbon source p-Coumaric acid in Agrobacterium fabrum C58

For carbon source p-Coumaric acid across organisms