Experiment set10IT033 for Pseudomonas putida KT2440

Compare to:

D-Glucose carbon source with 20AA_mix_minus_Thr

200 most important genes:

  gene name fitness t score description  
PP_4999 -4.8 -3.3 dihydroorotase-like protein compare
PP_4724 -4.7 -8.2 Carbamoyl-phosphate synthase small chain compare
PP_4723 -4.5 -15.0 Carbamoyl-phosphate synthase large chain compare
PP_0735 -3.1 -3.9 molybdopterin-synthase adenylyltransferase compare
PP_4700 -2.8 -1.9 pantothenate synthetase compare
PP_4122 -2.6 -2.9 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1231 -2.4 -5.0 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5093 -2.4 -2.3 twitching motility protein compare
PP_0339 -2.3 -3.7 Pyruvate dehydrogenase E1 component compare
PP_4961 -2.1 -2.5 putative Lipoprotein compare
PP_t12 -2.1 -1.7 tRNA-Thr compare
PP_3946 -2.1 -1.8 HTH-type transcriptional repressor NicR compare
PP_5338 -2.0 -3.3 aspartate ammonia-lyase compare
PP_1734 -2.0 -2.3 Probable septum site-determining protein MinC compare
PP_0393 -2.0 -1.3 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0787 -1.9 -5.1 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1664 -1.9 -3.2 phosphoribosylglycinamide formyltransferase 1 compare
PP_1233 -1.9 -5.0 sulfurtransferase compare
PP_4782 -1.9 -4.4 Phosphomethylpyrimidine kinase compare
PP_t29 -1.8 -2.5 tRNA-Ala compare
PP_5104 -1.8 -9.2 thiazole synthase compare
PP_4917 -1.8 -4.5 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_4902 -1.8 -3.1 Oligoribonuclease compare
PP_4126 -1.8 -2.4 NADH-quinone oxidoreductase subunit I compare
PP_1994 -1.6 -2.6 tRNA pseudouridine (38-40)synthase compare
PP_4964 -1.6 -3.7 D-erythrose 4-phosphate dehydrogenase compare
PP_4130 -1.5 -3.8 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_1426 -1.4 -8.6 L-aspartate oxidase compare
PP_0833 -1.4 -1.9 queuine tRNA-ribosyltransferase compare
PP_2929 -1.4 -6.9 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_4121 -1.4 -4.0 NADH-quinone oxidoreductase subunit C/D compare
PP_2336 -1.4 -3.7 aconitate hydratase 1 compare
PP_4897 -1.4 -3.2 N-acetylmuramoyl-L-alanine amidase compare
PP_0366 -1.4 -4.6 dethiobiotin synthetase compare
PP_4922 -1.4 -7.1 Phosphomethylpyrimidine synthase compare
PP_4271 -1.4 -1.3 conserved protein of unknown function compare
PP_4874 -1.3 -1.2 50S ribosomal protein L9 compare
PP_4124 -1.3 -4.3 NADH-quinone oxidoreductase subunit G compare
PP_3926 -1.3 -2.5 short-chain dehydrogenase compare
PP_2718 -1.3 -3.5 arsenic resistance transcriptional regulator compare
PP_0362 -1.2 -7.8 Biotin synthase compare
PP_t10 -1.2 -2.6 tRNA-Pro compare
PP_2214 -1.2 -3.9 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_5331 -1.2 -4.1 Long-chain acyl-CoA thioester hydrolase compare
PP_4120 -1.2 -3.3 NADH-quinone oxidoreductase subunit B compare
PP_4910 -1.1 -1.7 conserved protein of unknown function compare
PP_1716 -1.1 -1.8 Transcriptional regulator, Cro/CI family compare
PP_1348 -1.1 -3.5 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_1912 -1.1 -3.1 Phosphate acyltransferase compare
PP_5393 -1.1 -1.9 putative metal-binding chaperone compare
PP_0834 -1.1 -2.5 Sec translocation complex subunit YajC compare
PP_0001 -1.1 -1.4 probable chromosome-partitioning protein compare
PP_4131 -1.1 -3.7 NADH-quinone oxidoreductase subunit N compare
PP_5346 -1.1 -5.8 pyruvate carboxylase subunit B compare
PP_0164 -1.0 -4.4 conserved protein of unknown function compare
PP_4696 -1.0 -2.7 Nitrogen regulation protein NR(I) compare
PP_5347 -1.0 -7.0 pyruvate carboxylase subunit A compare
PP_2169 -1.0 -4.4 tRNA-dihydrouridine synthase A compare
PP_5217 -1.0 -7.6 Polyphosphate kinase compare
PP_2337 -1.0 -1.5 aconitate isomerase compare
PP_2928 -1.0 -4.8 Saccharopine dehydrogenase compare
PP_0775 -1.0 -1.6 conserved protein of unknown function compare
PP_0888 -1.0 -1.6 Photosynthetic apparatus regulatory protein RegA compare
PP_1987 -1.0 -1.5 Methlytransferase, UbiE/COQ5 family compare
PP_0691 -1.0 -2.0 Glutamate 5-kinase compare
PP_0188 -1.0 -4.2 putative Uroporphyrin-III C-methyltransferase compare
PP_0246 -0.9 -2.0 two-component system DNA-binding response transcriptional dual regulator compare
PP_2335 -0.9 -4.4 methylcitrate synthase compare
PP_2070 -0.9 -2.1 Transcriptional regulator, AraC family compare
PP_4993 -0.9 -3.0 Glutathione synthetase compare
PP_0512 -0.9 -2.8 hypothetical protein compare
PP_0365 -0.9 -4.7 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_5202 -0.9 -1.4 putative cell division protein compare
PP_5575 -0.9 -1.0 conserved protein of unknown function compare
PP_0513 -0.9 -2.2 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_1054 -0.9 -1.5 Type II secretion pathway protein XcpZ compare
PP_4811 -0.9 -2.5 Gamma-glutamyl phosphate reductase compare
PP_4984 -0.9 -5.1 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_2334 -0.9 -5.0 2-methylisocitrate lyase compare
PP_5271 -0.9 -3.9 DNA-binding transcriptional dual regulator, leucine-binding compare
PP_0363 -0.9 -5.1 8-amino-7-oxononanoate synthase compare
PP_1906 -0.9 -2.9 ribosomal large subunit pseudouridine synthase C compare
PP_1366 -0.9 -1.0 Transcriptional regulator MvaT, P16 subunit compare
PP_3903 -0.9 -1.5 conserved protein of unknown function compare
PP_0120 -0.9 -4.4 putative zinc ABC transporter compare
PP_t11 -0.8 -1.6 tRNA-Lys compare
PP_5529 -0.8 -3.5 putative epimerase compare
PP_3532 -0.8 -1.6 Transcriptional regulator, AsnC family compare
PP_1702 -0.8 -2.1 Recombination-associated protein RdgC compare
PP_3245 -0.8 -1.3 conserved protein of unknown function compare
PP_1528 -0.8 -1.4 conserved protein of unknown function compare
PP_1022 -0.8 -3.0 glucose 6-phosphate-1-dehydrogenase compare
PP_4129 -0.8 -2.0 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4909 -0.8 -3.6 phosphoserine phosphatase compare
PP_1733 -0.8 -1.5 membrane ATPase of the MinC-MinD-MinE system compare
PP_5167 -0.8 -2.4 conserved hypothetical protein compare
PP_2217 -0.8 -1.5 enoyl-CoA hydratase compare
PP_1909 -0.8 -2.1 putative septum formation protein compare
PP_4937 -0.8 -2.6 toluene tolerance protein compare
PP_0364 -0.8 -3.9 pimeloyl-[acp] methyl ester esterase compare
PP_4561 -0.8 -0.7 stress response protein compare
PP_3241 -0.8 -1.1 conserved exported protein of unknown function compare
PP_5456 -0.7 -1.3 conserved protein of unknown function compare
PP_4094 -0.7 -1.2 conserved protein of unknown function compare
PP_1344 -0.7 -1.0 conserved protein of unknown function compare
PP_2847 -0.7 -1.2 Urease accessory protein UreJ compare
PP_5153 -0.7 -3.1 putative isomerase/hydrolase compare
PP_3102 -0.7 -2.9 conserved protein of unknown function compare
PP_5705 -0.7 -1.7 protein of unknown function compare
PP_1018 -0.7 -3.4 mannose/glucose ABC transporter - ATP binding subunit conserved
PP_3876 -0.7 -2.1 conserved protein of unknown function compare
PP_5201 -0.7 -1.2 conserved protein of unknown function, UPF0149 family compare
PP_3035 -0.7 -1.1 conserved protein of unknown function compare
PP_4895 -0.7 -1.7 tRNA dimethylallyltransferase compare
PP_4343 -0.7 -2.9 Flagellar biosynthesis protein FlhF compare
PP_0117 -0.7 -2.3 Zn(2+) ABC transporter - permease subunit compare
PP_2441 -0.7 -2.3 conserved protein of unknown function compare
PP_1011 -0.7 -4.3 glucokinase compare
PP_2765 -0.7 -2.1 putative Sulfonate monooxygenase MsuD compare
PP_2029 -0.7 -1.7 von Willebrand factor type A domain protein compare
PP_1736 -0.7 -2.7 conserved protein of unknown function compare
PP_1629 -0.7 -2.9 Protein RecA compare
PP_5SB -0.7 -1.3 5S ribosomal RNA compare
PP_1328 -0.7 -1.5 Protein MraZ compare
PP_5270 -0.6 -3.1 D-amino-acid:quinone oxidoreductase (deaminating) compare
PP_3730 -0.6 -1.3 Transcriptional regulatory protein AruR compare
PP_5600 -0.6 -1.4 conserved protein of unknown function compare
PP_1096 -0.6 -1.1 putative electron transport complex protein compare
PP_1679 -0.6 -1.4 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_2379 -0.6 -2.2 putative cytochrome oxidase biogenesis protein compare
PP_2220 -0.6 -2.7 C4-type zinc finger protein, DksA/TraR family compare
PP_5691 -0.6 -3.1 conserved protein of unknown function compare
PP_4892 -0.6 -3.0 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4143 -0.6 -2.5 conserved protein of unknown function compare
PP_1038 -0.6 -1.6 conserved protein of unknown function compare
PP_2882 -0.6 -1.7 putative 2-hydroxychromene-2-carboxylate isomerase compare
PP_2462 -0.6 -1.6 conserved protein of unknown function compare
PP_2825 -0.6 -1.9 putative Integrase compare
PP_2340 -0.6 -1.6 conserved protein of unknown function compare
PP_4207 -0.6 -1.5 conserved protein of unknown function compare
PP_2500 -0.6 -2.2 conserved protein of unknown function compare
PP_1568 -0.6 -0.9 conserved protein of unknown function compare
PP_5155 -0.6 -3.1 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_3320 -0.6 -1.4 conserved protein of unknown function compare
PP_4804 -0.6 -1.7 RlpA-like lipoprotein compare
PP_0694 -0.6 -1.8 conserved protein of unknown function compare
PP_1215 -0.6 -0.8 Crossover junction endodeoxyribonuclease RuvC compare
PP_4379 -0.6 -2.6 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_2181 -0.6 -2.2 Transcriptional regulator, Cro/CI family compare
PP_2898 -0.6 -1.9 conserved exported protein of unknown function compare
PP_4879 -0.6 -1.8 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
PP_1300 -0.6 -1.7 putative amino acid ABC transporter - ATP-binding subunit compare
PP_0874 -0.6 -1.4 conserved protein of unknown function compare
PP_1062 -0.6 -1.0 MutT/nudix family protein compare
PP_5495 -0.6 -1.7 protein of unknown function compare
PP_0951 -0.6 -3.6 Ribosome hibernation promoting factor compare
PP_5114 -0.6 -0.7 putative adenine methyltransferase compare
PP_3731 -0.6 -3.6 Transcriptional regulator, TetR family compare
PP_4264 -0.6 -3.1 oxygen-independent coproporphyrinogen III dehydrogenase compare
PP_1439 -0.6 -1.1 conserved exported protein of unknown function compare
PP_0022 -0.6 -0.7 hypothetical protein compare
PP_4720 -0.6 -1.3 putative RNA binding protein compare
PP_5090 -0.6 -1.1 putative cell division protein compare
PP_0556 -0.6 -1.8 Acetoin catabolism protein compare
PP_2130 -0.6 -3.5 putative Soluble lytic transglycosylase compare
PP_0025 -0.6 -0.9 hypothetical protein compare
PP_0218 -0.6 -3.4 Sensory box protein compare
PP_5095 -0.6 -0.6 pyrroline-5-carboxylate reductase compare
PP_1441 -0.6 -1.9 tRNA (cmo5U34)-methyltransferase compare
PP_0781 -0.5 -1.0 conserved protein of unknown function compare
PP_3244 -0.5 -1.4 Magnesium transporter, MgtC family compare
PP_5348 -0.5 -2.9 Transcriptional regulator, LysR family compare
PP_5619 -0.5 -2.0 protein of unknown function compare
PP_4726 -0.5 -1.2 Chaperone protein DnaJ compare
PP_4575 -0.5 -1.5 Urea amidolyase-related protein compare
PP_2497 -0.5 -1.6 conserved protein of unknown function compare
PP_1396 -0.5 -1.8 conserved protein of unknown function compare
PP_0891 -0.5 -1.9 conserved exported protein of unknown function compare
PP_0391 -0.5 -2.7 Glycerol-3-phosphate acyltransferase compare
PP_5327 -0.5 -2.7 putative phosphate ABC transporter, permease subunit compare
PP_5035 -0.5 -2.3 Histidine utilization repressor compare
PP_0770 -0.5 -1.3 PemI-like protein compare
PP_1673 -0.5 -2.7 cobyrinate a,c-diamide synthase compare
PP_1654 -0.5 -1.5 cysteine synthase B compare
PP_3676 -0.5 -2.6 conserved protein of unknown function compare
PP_1774 -0.5 -1.0 conserved exported protein of unknown function compare
PP_5198 -0.5 -1.3 conserved protein of unknown function compare
PP_2449 -0.5 -2.8 conserved protein of unknown function compare
PP_4871 -0.5 -1.9 putative lysine decarboxylase family protein compare
PP_0398 -0.5 -1.0 Thiosulfate sulfurtransferase GlpE compare
PP_2622 -0.5 -1.2 conserved protein of unknown function compare
PP_5489 -0.5 -2.2 conserved protein of unknown function compare
PP_4413 -0.5 -3.3 conserved protein of unknown function compare
PP_1609 -0.5 -1.3 conserved protein of unknown function compare
PP_1303 -0.5 -2.8 Sulfate adenylyltransferase subunit 2 compare
PP_2041 -0.5 -2.5 Transcriptional regulator, LysR family compare
PP_4620 -0.5 -2.6 Fumarylacetoacetase compare
PP_2104 -0.5 -2.3 conserved membrane protein of unknown function compare
PP_1739 -0.5 -1.8 conserved membrane protein of unknown function compare
PP_0236 -0.5 -1.2 NAD(P)H-dependent FMN reductase subunit compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source D-Glucose in Pseudomonas putida KT2440

For carbon source D-Glucose across organisms